Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035042205.1
Location
JAWNLR010000796.1:159653-174911[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.5e-08 1.8e-05 24.9 0.1 2 45 1747 1790 1746 1791 0.93

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTATCCAAAAGCATACATCTGCCTCTGACGAATCTCAGCGCTCAGCGTGTGTTGATGTGCAGCGCCTCTCTGGGCAGCGAGGGATCCGTGACACTGCAACTGAGAGATGCGAGTACCTTGGAGACAGCCGATAgcacaacgccaacaacaacagcaacatcgacatcagcaacagcagcaacaacaacaacaacatcacatCCATTGGGCAGCCAATCAAATGGCGTCACAGTGCTTGAGACATCGTCATCAGCGCCGTCAGGAATAACGTCAGCATTAGAGAATGCTCTGACCGTTGGCTATCCGGATCCGGAAATGCTTGCAGACGTTTTAGGCACAATACAGACAGCCTcaCTTAAAAACAAgcatagcaacaacagtagtaatagcaacaacaacaacaacaccagcatcaaaagaagcaacaacaacaactgcaacagcaacagcaacaagagcaacagcactGCAGCGACAATTCTGAACAACTCCGGGATACATCTGAATAGTCCCAATAAAATAACGATAACACGTCGCAGTGCCAGCAACAAGATTAGCGTACAGACTGTGAGCACATCGACGAACACGACGATCAGCAGCATTGGTGGCAACAAGACCAACTACATTAAGAACTGTCTAATacggagcagcagctgcagcaacaccGCCACCAATGTCACGACGCTGGCACAGATtctgagcaacagcagcaccagcagcgcaGCCAGTTTACTCAgtcagcacaacaacaatagcaactgcagcaacagcagcaactttaGCATCGCATCCTCTGTGGGCAGCATTGGCAGCGTCAGCAGcatcaccagcaacaccagcaacgccagcaacaccagcagcagcagcaattgcagcagcagcaatagcaacgatagcaacagcagcatcggcCATAGTTTAAGCTTCAAGAGCAATGGTCGCAGTGTTGCTGGCATAGTTACCACATCCACAGCAACATCCACgagcacagcagcaactggcatTGGCATCGTCACCGTCGACAACGCACCCAGAAAGAGCCGACCCAAGTTATCCTCCCCAACGCGTCACGGACCACAGCAGTGTCAGATTTGTAGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAATTGACGCACAGCGACGAACggaaatatatttgtgcgCTTTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAGCCTTACGAGTGTCGAGCGGATGGCTGTGGCAAATCATATTGCGATGCGCGCTCCCTTCGCCGCCATTCAGAGAATCACCATGGATGCGTGCCCATCAGCGAATCACTCTCGCCCACGGCCAGCACCAACGGCAACGTCAGCAACGGCACAGGCAGCGTCACTGGCAGCGGGAGCAGCAACGGCATCGGAGTCGCCACCAGTTCCCTGAGCCTGTCGCCGGCAACGGCCAGCGGAGATGCCAGCTCACCAGATGGTGCCACCTGCATTCGCACATATATTTCCACTGGCAGCTCCATTGTGGATGCGGCCACTGGAATTGCATTGTCCGATGAGCAAATCAGGGCAATGAATTTGCCCATCAAAACGGGTGTTACTCTGCTCTCGCCCACCACATCGACATGCTCGACAGCATCTTCCACCGCATCTTCTGTGTCATGCTCGACAACAAGCAATGTCAACGGCAGCTCCGTTGTGGCCAGTTCACCCACCATAACGCTCTGTGATGGCGCAACGCTGGAGGCCGAGGGACTCACCAGGGAGCAACTCGATCTCATCAGCAAGATCATGCAGCAGACGAAGCAAACCAGTGCCCAGGTCACAGTCTCCTCGCCCACCAGCGTTAGCTCCTACAAAATCAATACGGAAACGGCCCAGGTCTCGGCGCGACCAAGGACCTGGAACATGCAACTGCTCAATAATGTGCAAAATGTGACGCTTACCGTGGACGATGGCAACGAACTGGTTGCCTCCGCCTCAAGTCCACCCCACGAGGTAAAGGACGATGAGCTGGGCCAGCAACAGCTGGTGGCCGCCATAAATCCCCACCTGCTCAACATTGTGAAGGTCGACAAGCCAGTTGAGTGTAATCTCTGTCACCGTAAGTTCAAAAATGTACCGGCCCTCAACGGGCACATGCGTCTCCATGGCGGCTACTTCAAAAAGGATCCGGAGACGAAGCGCAGCGAGAAGAAGGACTCCGGCGGACCACCCCTGCAGACGGCCAGCATCGGAGTGCGCGCCCTCATCGAGGAGAAGATTATAAGCAAGCGCAAGGACATCAATAAGGGTGCCTTTGCGGTTCCTGCACCACCCAACAGTGCGGTTAATAGTGGTGTCGTCggctgcaacaataacaataacagcagcaacagcagcagcaacaacaacaacaacaggaattGCAATCTGCGTCGCTCCATCAGTGACTTGGAGAGTTTCCTCAGTCCGAAGAGCAACGCGAACAGTAGCCTGAGCCAAGCGCTAGCCACCACTTGCAGCACCACCACAACCACTGCGGTGCTGCCCGCTGCAACCACCATTAAGAGCAGCAGTGGTCTGAGCATTCAACAGATTGGCTTACCCCAAAGCATCGAGATCTTCAGCGGTGGCCAGAGACAGCCGAAAACTCTGAGTTTGGGCAGTGGTGCAAATACGATTACGATAACCACCAACAATGTGCCTACGACGACGACAATGAGCGCTCTGTCGGCACTGAAGGGCGCCAGCAGCATTAGCAGTGTCTCTGGCAGTGCGGATCCCAAGGATTCCACATTGATTGAGCTGCTCAAGCGTGGCACGAGGATTGCCGTCACCTCGAAGAAGGCACAAGGCACAAGTACAAATCTGTTGCTCAGCAATGCGGTCAACGCCGAGCTGATTGGGAACAGTGTCCAGTCGGGGACTAGTCGTCAGATTATCACCAATAACAATCGCACAGTGATTATACCCTCGGATGTGCATGTGGTGTCCACAAAGTCCAACAAGGTGAGCAGCAATGGGGCAGGCAATGCGAACAGTATCTCTCTGCCGGATGGGACACCACTCTCACTGACCATTGGAGGCAATCAGGAGAGCATTGGGCCAAGCAGCATCTCGGGCGGTGTCAATGGCGTTTATGCGGTCACCTACACGACCAATACGGATGCAGTCGATCTATTTGGCAATGCCGAGGTGTTTAATGTCTCGGATACTGAAATGCTGTTGCAAACTGTGGACACAATGGAACTGCTGAACAATGAGGAAGAGAATGAGGATGAGGAGCACAAGCAAAGCGAACATTCCGAGAACTTTCCGCTGCTCAGCAAtgttgacgatgacgatgtgCTGATCAAGTTGGAGCCAGAATCGGGCACacccaacaccaacaacaccaatccTAGTCAGACAACAACGCCGTTGCCCACGTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAACAGCTCACAGATTCAGGCGATTGCCAATATGCGAGGAGGTGTTCTCTCATCACCATTGCATTCGCCATTGGCTTATCCGACTCCGCCGTCCAGTCACGAGAATGTCGCCCAATCCTCGCCCTTTATTGAAGATGCAGCGGCTCAGTTTGTGGACGCCAACCACACGTTCTTCGGGGATAAGACAGATTTCTCGCAAGTCTATTTCAAGACGGATGACGActgcatgcagcagcagcagctcagtgAGAATGACAATGAGAAGATACTCAAATTGAAGACGGTGCTGGAGGAGAGCGCTTTTGATGCTTCGATCAAGGTGGAGGATCTCTTAAATGGCACAGAGGATGATGCTGAGTGTGATCTGCGTGAGTTTGCGGAGACTAATTTGTCGTTTCTCGACGAGGATCAGGAGTTTCTGAATGACTCACGCAATGCCACCTCACCACTCTCAGAGTCCTTTTTCACCAGTGGCATTGGCTCCGCCGAGGATGTTAAGCAGGTGCTTCGCGAGGTGCTTCCAGATGAGAATATGCAATTGCAGCTGAGCAGCGAACAGCTGGCTGAGAATATCATCGATCTCTACTATTTGCCCGGATTGGGCCTGCAATCGCAAATGATGTCCAACTCGGATGATCCGCTCTTGTCCTCGTCCCCCCGAGATTTTGGCCTGCAGCGACAGGTGGTCCATGCGACAACTTCTGCAACTTCATCGACGGTACCGTCCATGGAGCAGTTGCAGTCTTCGGGGATAATTTttgagcaacaacagcaacaattgcagcctcaacagcagcaagaccagcagccacagctgcaacctcaacagcagcagcaacagttgcagatcggccaacagcaacagtcggACTTTATGTTGTCCAACTTTGCACCCGTGTCCTGTCAAACGCAGTATTTGAATGCCAATCAGCAGTCGATGACAATGCAGCCGCTCAACAATCTGCTGCAGCCGTTACTCTtcggcagcaacaatagcagcagcaacaacatcgatAAGCAACATGAGTTTGGAACGCTGCTGCAAACAACTAACGGACAAACATCCGCTCTGGATGCTAGCCTAATATTTGCCTGCGGCGACGgaatcaaaaataattccaacaacaataagtcGCTGATTGGCAACCTATCCGCAGCAGCTCCAGTGTCGACACCAACACCCAGTTTTTCCAATCTGCAACCGTTGTCCAATCAAACGAATTCCATATTGAAGCGACGCCTGCGCTCGAATGGTGCACAGGATGTGCACAAGTTCTCCAAATTCCATACGCTATCGCCACATCGCTCGAAGCTGCGCAAACCCTCGCGCACCCACTACACTCCGGCGCCAATATTGAATCCAGACCGGAAGGGCACAGGACTCTATTACAATGTACGCAATCAGCTTGGTCAGAGCATTTTTGATGTCTTTGATGATGATTTTGGTGATCCCGTGGGCCTGGTGGACTTCTCCGATGAGTCCAAGGTGAATCTCGGTTCGACGTATCAGGCGCAGATACCCACCTGCAAGCCACTCGAAGAGGCCATCAAGGAGACAATGTGCGCGGACATGATGTGGGATCCCAGCGTACAGATCGACGACAAGATACTGATGCGCTACATAGATCTCAGCAAATCCTCGGCCGTGCCCATGGGCAGCCATTCCGAGGAGGTAGCCCTCCAAGCCCTGCTTGAGGCGAAAGGTAACTCGGCGGCCGCGGTTTTGACCCTTCTGCAGACGCAGTCCAGCGCATTCCAAATGAAATGGACAGCCTACGAACTGGAGCAGTTTCTACGCGGCCTGGAAAGGCATGGCAAAGATTTTGGCAAAATCGCCAGCGAgTTGCTCACGAAGTCATCGGGTGAATGCGtgcaaatgtattatttttggaaGAAGCTCTGCGTTGATTACAAGGTATCCCACCTGAAAATGGAGCCAGTTCCGCCCAGCATCCCAGTCGTGGAGCAGAAGCCCTACGTCTGCGAGATTGCCGACTGCTCGGCGAGCTTCAGCTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTATGGTAgaaatgccagcaacaacaacaacagcaacaacaatcagcatGCCACGGCAATTagtgccaacaacagcaacaaccaccatagttccagcaacaacaacagcaacaacaacaacaccaataacaGCAACGCATGCGTGCCCCAGCctagcagcaatagcaatcaATGCCTcagtgcaacaataacagcaacatcaacagtaGCGCACACAAAtggcaataacagcaacaacaccaataccaatgccaacaacaataacagcaacaacagcaacatctcCAATGCAACTGGCACTTCCATAAACACAACGTtgctatcagcagcagcaacagcagcaaccacatcgacagcaacaaaagacagcaacagcaacagcaacaattccAATATTGCAAAGGACACCGAGTTTCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAAAGTCGCAGCGCCCATATGAAAACGCATCGTGTCCAAGAATCAGAACAATCAACCAATTCCAAACAGCAATCGGCCACCAATGCAAATCTATCTGCtgttgcagtggcagtggcactagcagcagcatcagcatcggcagcatcagcagcagcagcagcatcagcagcagcgtctgtggcatccacagcagcagcagcagcaccctCTGCAGTATCGGTTACGGCCTCCACCTCGTCGTAG
Protein Sequence
MAAINTVSKSIHLPLTNLSAQRVLMCSASLGSEGSVTLQLRDASTLETADSTTPTTTATSTSATAATTTTTSHPLGSQSNGVTVLETSSSAPSGITSALENALTVGYPDPEMLADVLGTIQTASLKNKHSNNSSNSNNNNNTSIKRSNNNNCNSNSNKSNSTAATILNNSGIHLNSPNKITITRRSASNKISVQTVSTSTNTTISSIGGNKTNYIKNCLIRSSSCSNTATNVTTLAQILSNSSTSSAASLLSQHNNNSNCSNSSNFSIASSVGSIGSVSSITSNTSNASNTSSSSNCSSSNSNDSNSSIGHSLSFKSNGRSVAGIVTTSTATSTSTAATGIGIVTVDNAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECRADGCGKSYCDARSLRRHSENHHGCVPISESLSPTASTNGNVSNGTGSVTGSGSSNGIGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSIVDAATGIALSDEQIRAMNLPIKTGVTLLSPTTSTCSTASSTASSVSCSTTSNVNGSSVVASSPTITLCDGATLEAEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETAQVSARPRTWNMQLLNNVQNVTLTVDDGNELVASASSPPHEVKDDELGQQQLVAAINPHLLNIVKVDKPVECNLCHRKFKNVPALNGHMRLHGGYFKKDPETKRSEKKDSGGPPLQTASIGVRALIEEKIISKRKDINKGAFAVPAPPNSAVNSGVVGCNNNNNSSNSSSNNNNNRNCNLRRSISDLESFLSPKSNANSSLSQALATTCSTTTTTAVLPAATTIKSSSGLSIQQIGLPQSIEIFSGGQRQPKTLSLGSGANTITITTNNVPTTTTMSALSALKGASSISSVSGSADPKDSTLIELLKRGTRIAVTSKKAQGTSTNLLLSNAVNAELIGNSVQSGTSRQIITNNNRTVIIPSDVHVVSTKSNKVSSNGAGNANSISLPDGTPLSLTIGGNQESIGPSSISGGVNGVYAVTYTTNTDAVDLFGNAEVFNVSDTEMLLQTVDTMELLNNEEENEDEEHKQSEHSENFPLLSNVDDDDVLIKLEPESGTPNTNNTNPSQTTTPLPTFQQFHSKELIMQNSSQIQAIANMRGGVLSSPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDANHTFFGDKTDFSQVYFKTDDDCMQQQQLSENDNEKILKLKTVLEESAFDASIKVEDLLNGTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQLAENIIDLYYLPGLGLQSQMMSNSDDPLLSSSPRDFGLQRQVVHATTSATSSTVPSMEQLQSSGIIFEQQQQQLQPQQQQDQQPQLQPQQQQQQLQIGQQQQSDFMLSNFAPVSCQTQYLNANQQSMTMQPLNNLLQPLLFGSNNSSSNNIDKQHEFGTLLQTTNGQTSALDASLIFACGDGIKNNSNNNKSLIGNLSAAAPVSTPTPSFSNLQPLSNQTNSILKRRLRSNGAQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYYNVRNQLGQSIFDVFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPTCKPLEEAIKETMCADMMWDPSVQIDDKILMRYIDLSKSSAVPMGSHSEEVALQALLEAKGNSAAAVLTLLQTQSSAFQMKWTAYELEQFLRGLERHGKDFGKIASELLTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVPPSIPVVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASNNNNSNNNQHATAISANNSNNHHSSSNNNSNNNNTNNSNACVPQPSSNSNQCLSATITATSTVAHTNGNNSNNTNTNANNNNSNNSNISNATGTSINTTLLSAAATAATTSTATKDSNSNSNNSNIAKDTEFPCKVCGKVFNKVKSRSAHMKTHRVQESEQSTNSKQQSATNANLSAVAVAVALAAASASAASAAAAASAAASVASTAAAAAPSAVSVTASTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00485798;
90% Identity
iTF_00593355;
80% Identity
iTF_00522446;