Basic Information

Gene Symbol
TRERF1
Assembly
GCA_035041605.1
Location
JAWNLA010000030.1:1239233-1253395[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.9e-09 3.5e-06 26.9 0.1 2 45 1743 1786 1742 1787 0.94

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTATCCAAAAGCATACACCTGCCTCTGACGAATCTCAGCGCTCAGCGTGTGTTGATGTGCAGCGCCTCTCTGGGCAGTGAGGGATCCGTGACACTGCAACTGAGAGATGCGAGTACCTTGGAGACAGCCGATagcacaacaccaacaccaacagcaacatcgacatcagcagcagcagcaacaacaacaacaactcatcCAATAGCAACATCGTCATTGGGCAACCAAACAAATGGCGTCACTCTGCTTGAGACATCGTCTTCAGCGACGTCAGGAATAACGTCAGCATTAGAGAATGCGCTGACCGTTGGCTATCCGGATCCGGAAATGCTTGCAGATGTTTTAGGCACAATACAGACAGCCTcaCTTAAAAACAagcatagcaacaacaataataatagcaacaacaccagcatcaaaagaagcaacaacaacaataacaacaacaagagcagcagcacagcagcgaCGATTCTGAACAACTCCGGGATACATCTGAACAGTCCCAATAAAATAACGATAACACGTcgcagcgccagcaacaagATTAGCGTACAGACTGTGAGCACATCGACGAACACGACGATTAGCAGCATTGGCGGCAGCAAGACCAACTACATTAAGAACTGTCTAatacgcagcagcagctgcagcaacacgGCCACCAATGTCACAACGCTGGCACAGATtctgagcaacagcagcaccagcagcgcaGCCAGTTTACTCAgtcagcacaacaacaatagcaactgcagcaacagcagcaactttagCATCGCATCCTCTGTGGGCAGCATtggcagcgtcagcagcatcaccagcaacaccagcaacaccagcagcagcagcaattgcagcagcagcaacagcaacgatagcaacagcagcatcggcCAAAGTTTAAGCTTCAAGAGCAATGGTCGAAATGTTGCTGGCATAGTCACTGCATCAACAACATCCaccagcacagcagcaactggcattggcattgtcaCCGTCGACAACGCGCCCAGAAAGAGCCGCCCCAAGTTATCCTCCCCCACGCGGCACGGACCTCAGCAGTGTCAGATTTGTAGCAAGATCTTTGGAAATGCCTCGGCGTTGGCCAAGCACAAACTGACGCACAGCGACGAAcggaaatatatttgtgcgcTTTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAGCCTTACGAGTGTCGAGCGGATGGCTGTGGCAAATCATATTGCGATGCACGCTCCCTTCGTCGTCATTCGGAGAATCACCATGGATGCGTGCCCATCAGCGAATCACTCTCGCCCACGGCCAGCACCAACGGCATCGGCAGCAtaactggcagcagcaacagcaacggcatcGGTGTCGCCACCAGTTCCCTGAGCCTATCGCCGGCCACGGCCAGCGGGGATGCCAGCTCACCAGATGGAGCCACCTGCATTCGCACATATATTTCCACTGGCAGCTCCATTGTGGATGCGGCCACTGGAATTGCGCTGTCCGATGAGCAAATCAGGGCAATGAATTTGCCCATCAAAACGGGTGTTACTCTGCTCTCGCCCACCACATCGACATGCTCGACCACATCGTCCACCGCATCTTCAGTATCATGCTCGACATCGAGCAATGTCAACGGCAGCTCCGTTGTGGCCAGTTCACCCACCATAACGCTCTGTGATGGCGCAACGCTGGAGGCCGAGGGACTCACACGGGAGCAACTCGATCTCATCAGCAAGATCATGCAGCAGACCAAGCAAACCAGTGCCCAGGTCACAGTCTCCTCGCCCACCAGCGTTAGCTCCTATAAAATCAATACGGAAACGGCCCAGGTGTCGGCGCGACCAAGGACCTGGAACATGCAATTGCTCAATAATGTGCAAAACGTGACCCTTACCGTGGACGATGGCACCGAACTGGTTGCCTCCGCATCAAGCCCACCCGTCGAGGTAAAGGACGATGAGCTgggccagcagcaacagctagtGACCGCCATAAATCCCCACCTGCTCAACATTGTGAAGGTCGATAAGCCAGTTGAGTGTAATCTCTGTCACCGTAAGTTCAAAAATGTACCCGCCCTCAATGGGCATATGCGTCTGCACGGCGGCTACTTCAAAAAAGATCCGGAGACGAAGCGCAGCGAGAAAAAGGACTCTGGCGGACCCCCACTGCAAACGGCCAGCATTGGAGTACGCGCCCTCATCGAGGAGAAGATTATAAGCAAGCGCAAGGACATCAATAAGGGTGCCTTTGCAGTGCCTGCACCACCCAGCAGTGCAGTTAATAGTGGTGTCgtcagctgcaacaataacaataacaataacagcagcagcaacaacaacaacaacaacaacaacaggaattGCAATCTGCGTCGCTCGATCAGCGACTTGGAGAGTTTTCTCAGTCCGAAGAGCAACGCGAACAGTAGCCTGAGCCAAGCGCTGGCCACCacttgcagcagcaccaccaccacagcGGTGCTGCCCGCTGCGACCACCATTAAGAGCAGCAGTGGTCTAAGCATTCAACAGATTGGCCTACCGCAAAGCATCGAGATCTTCAGCGGTGGGCAGAGACAGCCGAAAACTCTGAGTTTGGGCAGTGGTGCAAACACGATTACGATAACCACCAACAATGTGCctacgacgacgacaatgAGCGCTCTGTCGGCACTGAAGGGCgccagcagcattagcagtgTCTCTGGCAATGCGGATCCCAAGGATTCCACATTGATTGAGCTACTCAAGCGTGGCACAAGGATTGCCGTCACCTCGAAGAAGGCACAAAACACAAGTACAAATCTGCTGCTCAGCAATGCGGCCAACGCTGAGCTCATTGGCAACAGTGTCCAGGCAGCGAGTAGTCGTCAGATCATCACCAATAACAATCGCACAGTGATTATACCCTCGGATGTGCATGTCGTCTCCACAAAGTCCAACAAGGTGAGCAGCAATGGAGCAAACAATGCGAACAGTATCTCTCTGCCGGATGGCACTCCACTCTCACTGACCATTGGAGGCAATCAGGAGAGCATTGGGCCAAGCAGCATCTCGGGTGGTGTCAATGGTGTTTATGCGGTCACCTACACGACCAATACGGATGCAGTCGATCTGTTTGGCAGTGCCGAGGTGTTTAATGTCTCGGATACTGAAATGCTGTTGCAAACTGTGGACACAATGGAGCTGTTGAACAATGAGGAAGAGAATGAGGATGAGGGGCACAAGCAAAGCGAACATTCCGAGAACTTTCCGCTGCTCAGCAATGTTGAGGACGATGTGCTGATCAAGTTGGAGCCAGAGTCGGGCACACCCAGCACCAACACCAATGCTAGTCAGACAACAACGCCGTTGCCCACGTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAACAGCTCACAGATACAGGCGATTGCCAATATGCGAGGAGGGGTTCTCTCATCACCATTGCATTCGCCACTGGCTTATCCGACACCGCCGTCCAGTCACGAGAATGTTGCCCAATCCTCGCCTTTTATTGAAGATGCTGCCGCTCAGTTTGTGGACGCCAACCACACGTTCTTCGAGGATAAGACGGATTTCTCGCACGTCTACTTCAAGACGGATGACGattgcatgcagcagcagcagcagctgagtgAGAATGACAATGAGAAGATACTCAAATTGAAGACGGTGCTGGAGGAGAGCGCTTTTGATGCTTCGATCAAGGTGGAGGATCTCTTAAATGGCACAGAGTGTGTTGCTGAGTGTGATCTGCGTGAGTTTGCGGAGACTAATTTGTCGTTTCTCGATGAGGATCAGGAGTTCCTGAATGACTCACGCAATGCCACTTCGCCTCTCTCAGAGTCATTCTTCACCAGTGGCATTGGCTCCGCCGAGGATGTTAAGCAGGTGCTCCGCGAGGTCCTTCCAGATGAGAatatgcaattgcagctgagCAGCGAACAGCTGGCTGAGAATATCATCGATCTCTACTATTTGCCCGGATTGGGCCTACAGTCTCAAATGATGTCCAACTCGGATGATCCGCTCTTGTCATCTTCTCCCAGAGATTTTGGTCTGCAGCGACAGGTTGTCCATGCGACTTCATCGACGGTACCCTCCATGGAGCAGTTGCAGTCTTCAGGGATCATGTTTgcgcaccaacagcaacaattgcagcctCAACAGGAGCAAGACCAGCAGCCACAACTGCAacctcaacagcagcagcaacagttgcagatcggccaacagccgcagcagcagcaacagtcggaCTTTATGTTGTCAAACTTTACGCCCGTATCCTGTCAAACGCAGTACTTGGACGCCAATCAGCAGTCGATGACAATGCAGCCACTCAACAGTCTGCTGCAGCCATTACTCttcggcagcaacaataacggcaacaacaacaacaacagcaacagcatcgatAAGCAACAAGAGTTTGGAACGCtgctgcaaacaacaaatggacAAACATCTGCTCTGGATGCTAGCCTGATCTTTGCCTGCGGCGACGGAATCAAAAGTAattccaacaacaataagtcGCTGATTGCAAACTTACCCGCAGCAGCTCCAGTGGTGACGCCAACACCCAGCTTATCCAATCTGCAACCATTGTCCAACCAAACGAATTCCATATTGAAGCGTCGCCTGCGCTCAAATGGTGCACAGGATGTGCACAAGTTCTCCAAATTCCATACGCTGTCGCCACATCGCTCCAAGCTGCGCAAACCCTCGCGCACCCATTACACTCCGGCGCCAATATTGAATCCGGATCGGAAGGGCACCGGACTCTATAACAATGTACGCAAGCAGGTTGGTCAAAACATGTTTGATGTCTTTGACGATGATTTTGGTGATCCCGTGGGCCTGGTGGATTTCTCCGACGAGTCCAAGGTGAATCTGGGCTCGACGTATCAGGCGCAGATACCCTCCTGCAAGCCACTTGAAGAGGCCATCAAGGATACAATGTGCGCGGACATGATGTGGGATCCCAGCGTACAGATCGATGAGAAGATACTGATGCGCTACATAGATCTCAGCAAATCCTCGGCCGTGCCCATGGGCAGCCATTCCGAGGAGGTGGCCCTCCAAGCCCTGCTTGAGGCGAAAGGTAACTCGGCGGCCGCAGTGTTAACCCTTCTGCAGACGCAGTCCAGCGCATTCCAAATGAAATGGACAACCTACGAACTGGAGCAGTTTTTACGCGGCCTGGAAAGACATGGCAAAGACTTTGGCAAAATCGCCAGCGAgCTGCGCACGAAGACATCGGGCGAATGCGTGCAAATGTATTATTTCTGGAAGAAGCTGTGTGTTGATTACAAGGTGTCCCACCTGAAAATGGAGCCAGTGCCGCCCAGCACTCCAGTCGTGGAACAGAAGCCATACGTGTGCGAGATTGCCGACTGCTCGGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTATGGTAGAAAtgccaacaatagcaacaacagcaacaacaacaacaacaatcagcatgCCACGGCAATTagtgccaacaacagcaacaacatccacCATAgttccagcaacagcaacaacaacaccaataacagCAACGCATGCGCGCCCCAGcccagcagcaatagcaatcaGTGCATcagtgcaacaataacagcaacatcaaccgTAGCGCACACAAAtggcagtaacagcaacaacgccaataccaatgccaacaacaataacagcaacaacaacaacaacagcatcaacagcaacatctcCAATGCAACTGGCACTTCCATAAACACAACGTtgctatcagcagcagcagcaacaacatcgacagcaacaaaagacagcaacagcaacaattccAATATTGCAAAGGACACCGAGTTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAAAGTCGCAGCGCCCATATGAAAACGCATCGTGTGCAAGAATCTGAACAATCAACCAATTCCAAACAGCAATCGGCCACCAATGCAAATTTGTCTGCTgttgcagtggcagtggcactggcagcagcatcagcatcggcagcatcggcagcagcagcagcatcagcagcagcagcatcagcagcgtcTGTGGCATCCACAGCAAcatctgcatcagcatcagcatcagcagcacccTCTGCAGTTACGGTTACGGCCTCCACCTCGTCGTAG
Protein Sequence
MAAINTVSKSIHLPLTNLSAQRVLMCSASLGSEGSVTLQLRDASTLETADSTTPTPTATSTSAAAATTTTTHPIATSSLGNQTNGVTLLETSSSATSGITSALENALTVGYPDPEMLADVLGTIQTASLKNKHSNNNNNSNNTSIKRSNNNNNNNKSSSTAATILNNSGIHLNSPNKITITRRSASNKISVQTVSTSTNTTISSIGGSKTNYIKNCLIRSSSCSNTATNVTTLAQILSNSSTSSAASLLSQHNNNSNCSNSSNFSIASSVGSIGSVSSITSNTSNTSSSSNCSSSNSNDSNSSIGQSLSFKSNGRNVAGIVTASTTSTSTAATGIGIVTVDNAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECRADGCGKSYCDARSLRRHSENHHGCVPISESLSPTASTNGIGSITGSSNSNGIGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSIVDAATGIALSDEQIRAMNLPIKTGVTLLSPTTSTCSTTSSTASSVSCSTSSNVNGSSVVASSPTITLCDGATLEAEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETAQVSARPRTWNMQLLNNVQNVTLTVDDGTELVASASSPPVEVKDDELGQQQQLVTAINPHLLNIVKVDKPVECNLCHRKFKNVPALNGHMRLHGGYFKKDPETKRSEKKDSGGPPLQTASIGVRALIEEKIISKRKDINKGAFAVPAPPSSAVNSGVVSCNNNNNNNSSSNNNNNNNNRNCNLRRSISDLESFLSPKSNANSSLSQALATTCSSTTTTAVLPAATTIKSSSGLSIQQIGLPQSIEIFSGGQRQPKTLSLGSGANTITITTNNVPTTTTMSALSALKGASSISSVSGNADPKDSTLIELLKRGTRIAVTSKKAQNTSTNLLLSNAANAELIGNSVQAASSRQIITNNNRTVIIPSDVHVVSTKSNKVSSNGANNANSISLPDGTPLSLTIGGNQESIGPSSISGGVNGVYAVTYTTNTDAVDLFGSAEVFNVSDTEMLLQTVDTMELLNNEEENEDEGHKQSEHSENFPLLSNVEDDVLIKLEPESGTPSTNTNASQTTTPLPTFQQFHSKELIMQNSSQIQAIANMRGGVLSSPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDANHTFFEDKTDFSHVYFKTDDDCMQQQQQLSENDNEKILKLKTVLEESAFDASIKVEDLLNGTECVAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQLAENIIDLYYLPGLGLQSQMMSNSDDPLLSSSPRDFGLQRQVVHATSSTVPSMEQLQSSGIMFAHQQQQLQPQQEQDQQPQLQPQQQQQQLQIGQQPQQQQQSDFMLSNFTPVSCQTQYLDANQQSMTMQPLNSLLQPLLFGSNNNGNNNNNSNSIDKQQEFGTLLQTTNGQTSALDASLIFACGDGIKSNSNNNKSLIANLPAAAPVVTPTPSLSNLQPLSNQTNSILKRRLRSNGAQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYNNVRKQVGQNMFDVFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPSCKPLEEAIKDTMCADMMWDPSVQIDEKILMRYIDLSKSSAVPMGSHSEEVALQALLEAKGNSAAAVLTLLQTQSSAFQMKWTTYELEQFLRGLERHGKDFGKIASELRTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVPPSTPVVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNANNSNNSNNNNNNQHATAISANNSNNIHHSSSNSNNNTNNSNACAPQPSSNSNQCISATITATSTVAHTNGSNSNNANTNANNNNSNNNNNSINSNISNATGTSINTTLLSAAAATTSTATKDSNSNNSNIAKDTEFPCKVCGKVFNKVKSRSAHMKTHRVQESEQSTNSKQQSATNANLSAVAVAVALAAASASAASAAAAASAAAASAASVASTATSASASASAAPSAVTVTASTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00485798;
90% Identity
iTF_00593355;
80% Identity
iTF_00482487;