Basic Information

Insect: Drosophila atripex
Gene Symbol: -
Assembly: GCA_035045925.1
Location: JAWNOP010000052.1:8341913-8345358[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0069 0.53 10.9 2.9 3 23 320 341 318 341 0.96

2 18 0.43 33 5.2 0.2 1 23 348 373 348 373 0.91

3 18 0.031 2.4 8.8 2.2 2 23 384 405 384 405 0.93

4 18 0.048 3.7 8.2 0.3 3 23 446 467 445 467 0.95

5 18 0.00071 0.055 14.0 0.4 3 23 475 495 473 495 0.95

6 18 0.097 7.5 7.3 0.1 1 23 503 526 503 526 0.96

7 18 0.00033 0.026 15.0 0.2 2 23 531 552 530 552 0.97

8 18 0.015 1.1 9.8 0.5 1 21 560 580 560 581 0.93

9 18 0.0003 0.023 15.2 1.1 1 23 600 624 600 624 0.92

10 18 0.05 3.8 8.2 1.8 3 21 631 649 631 650 0.90

11 18 0.0052 0.4 11.3 0.3 1 23 669 694 669 694 0.96

12 18 0.21 16 6.2 1.7 2 23 712 734 711 734 0.94

13 18 0.0024 0.19 12.3 0.2 2 23 740 762 739 762 0.92

14 18 0.016 1.3 9.7 0.2 2 23 766 788 765 788 0.95

15 18 4.3e-05 0.0033 17.8 2.0 1 23 794 816 794 816 0.97

16 18 0.013 0.99 10.0 1.0 1 23 820 843 820 843 0.93

17 18 9.2e-06 0.00071 19.9 1.2 1 23 849 872 849 872 0.97

18 18 2.7e-05 0.0021 18.5 0.2 4 23 879 904 876 904 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0069	0.53	10.9	2.9	3	23	320	341	318	341	0.96
2	18	0.43	33	5.2	0.2	1	23	348	373	348	373	0.91
3	18	0.031	2.4	8.8	2.2	2	23	384	405	384	405	0.93
4	18	0.048	3.7	8.2	0.3	3	23	446	467	445	467	0.95
5	18	0.00071	0.055	14.0	0.4	3	23	475	495	473	495	0.95
6	18	0.097	7.5	7.3	0.1	1	23	503	526	503	526	0.96
7	18	0.00033	0.026	15.0	0.2	2	23	531	552	530	552	0.97
8	18	0.015	1.1	9.8	0.5	1	21	560	580	560	581	0.93
9	18	0.0003	0.023	15.2	1.1	1	23	600	624	600	624	0.92
10	18	0.05	3.8	8.2	1.8	3	21	631	649	631	650	0.90
11	18	0.0052	0.4	11.3	0.3	1	23	669	694	669	694	0.96
12	18	0.21	16	6.2	1.7	2	23	712	734	711	734	0.94
13	18	0.0024	0.19	12.3	0.2	2	23	740	762	739	762	0.92
14	18	0.016	1.3	9.7	0.2	2	23	766	788	765	788	0.95
15	18	4.3e-05	0.0033	17.8	2.0	1	23	794	816	794	816	0.97
16	18	0.013	0.99	10.0	1.0	1	23	820	843	820	843	0.93
17	18	9.2e-06	0.00071	19.9	1.2	1	23	849	872	849	872	0.97
18	18	2.7e-05	0.0021	18.5	0.2	4	23	879	904	876	904	0.83

Sequence Information

Coding Sequence: ATGTcggaaaaccaaaataaacaaagctgCCTGCATTGTAGAGTATTCAATCCGAAATTCAAGTACCAGGAGATATTCGATGAGTTTGGAACCGAGTTGGGCCTGCAATCTCTGCTAGCCAAGCACTTTGACTTGAATGTGGCACCAAACTCCAatgagcagcagctgctgtgCGAAGTTTGCGTCAACAGTTTAATCCGCCTCTTTGACATCGATGAACTGCAGCGGGAACAGGATGCGGCGAAGGATAAGGCCAAAGAGCCTGCTCCAGAGAAACAGCTTTCAGTGGCTATCCCACAATGTAGtgcaccaccatcaccaacAGTGCATCCTGCTACAAAACTGGTTGCTTCTCCAAAGACTAAGACGGTTAACACAGTACCAGTTGTTCCAAAAAGAGAAAACAGTGTTCGCATCAACAAGGAACCACCATCACCACTCCACATTGCTCCTACTACTTCCCAGGATTTTGACAAAGTCAAGGAGCAGGCTATATCAGCTCCCCCcgtcaaagtacaatcaaaaGGAGTTTCAAAGGAATTGGATCAGGAGCAGATCAGTCGCCTGATTCGCAACATCCTGAACGACGATGAGGTAATCGTTGAAGAGGTTTCAACCCCAGTGCCAGAAGAAGTTGAAAAGCACGAGGAAATAGTCTTGCTAGACAGCGAGTCTATCCCTGACACGGATCTAGATCAGGAAGAGTTCATTTACGACCATGAAGATATCCTAGATCCGGTGCTGCCCGATTTAAAGCTGAAGCCGGAGTCTCGGCCAAAGGTGGAAGCGGAGGATAGTCAGAGTGAGGGAGAGGTCGATGGAAGCGAAACTAGCAATGTCATTATCTTTAACTTTGTTGAGATCAAAGATCATGACGATATTGGTAACATTTTCGAATACCTGTCCACGGTGGTCAAAACCAGCTTTGAGAAACTCTCTTTCGAGTGGTGCACAGATTGCAAACACTGCtctaaaaagtttcaaaactTCAACTCTCTCCTAAGTCATGTTCTAACAGCTCACAAGTCTAGAGGTAATATCTTCAGGTGTCCTCTAAAGGACTGCAGCAAGGAGCTGAAAGGTAGCAAATTTCTGGCCATGCATTTGGTGCTCATGCATGCACAAGTGGCAGACATTCCAATCTATGGCAGTTGTCCGGAGTGCAAAATGACATTTTCAAACATTCTCCAATACAACAAACACTCCTGCGCCCATGTCATCAAAAAGAAGCGAGGTGTCCGGCTTTACTGCGAAATGTGTGCCCAAGACTTCCCCTCCTGGAAGCGCTTCAACTTTCACAATCAATTTCATCTGGAGAAGCACAGGCCTCGTAATTGTTTCATCTGCGATTATGCCAGCAATAACATTGACGAACTTTTCCAGCACTTGAATTACTTCCATGAGCCTGAGGGAACTCTATTCTGTGATATTTGTGATCGCACCTTCCGAGATCCCGAGGTGTTCACTGAGCACAACAAATCCCATGCCAATGTTAGTGGCACCACCTTTTCCTGTGGTGAGTGCATGGCCATGTTTGAGTCTCGGGGTCGATTGAATGGACACATGAGAGCTATGCATGGCAGCGCCATAAGCTGCGAATTGTGCTCCCGGGAGTTCGCCAGCGAGGCTACCTACAACATCCACATGAAGACGCACTTGATTATCGAAAGGGATGTCCATGTGTGCAGCAAATGCGGCCAGATAagcgacaacaacaagaacttCCAGGATCATGTAAATAACGAGGAGTCTCCCTGTTTTCAAGCAAAGATTTTTACGAAACTCCTTCGCGATGCTTATGTTTGCGAACATTGCTCGCTGTACTTTAAAGAAAAAGAGGACCTGCAGCGCCACCGGGAAACCGGAGTGCATAAGAACGGATTGTATTGGTGTCAACCGTGCGGCAAGGAGTTTTCTCACATGAAACTATACCGCCACCATATTCGTAACTTTCAGCAAATAAGAGGAGATGCCACGCACCGCAAGCTGGAGATCTGTGTGTTCTACATGTGCGATCAGGAGgGATGTTCTGAGGCTTATGCCAATTGGAATTCCTTGTACACGCACAAGCGCCGAACACATGAGACTTCCAGCAAGCAGGCtaataaaacttcaaaatCTGAACAGGAATGGGTGTGCCAGTTCTGTTTGAAGCAGTGCCGCTCCAAGATGTCCTTGTCAGTTCATGTAGCAAGAAGCCACAATAATGACAATGTTGTCTGTCCCTTGTGTAATGCTTCTTATAAGAACCAGGAAGCCTTGGACAAGCACCACGCCTACTGGCACGAGCCCATCGAATGTCCCCAGTGCttcaaaattgtgaaaaacCGACGGAACTATGATACCCATGTTAACGTAGTGCATTCCAATACGAAGCGATATGCGTGCAGTGTCTGCCAAAAGGGTTTCTATCACAAAAGCGAAATGGAGTCACAccaaagaCTCCATGGCCAGTCATACAATTGTGATCAGTGCAGCTTCACCACCAGAAACAAGAAGTCTCTGTCGGTCCACGTACTTGGTCAGCACTACAAACGATTCGCTTTCGAGTGCAAGATGTGCAGCAAGCGATTTGGACGCCAACAGGGCCTGAACACCCACATGCAGCGAGCTCACGGATCGAAGTTCATGTGCCGGGACTATTTTGAGGGCGGCTGTGGCCGCAGCTTCATCAACAGTTCCCAGTTGAATGTGCACGTACGAAAGGTGCACAATGGCACTATTTTCCTCAccgaggaagaggaggaggagtacaTAAGCGATGGGCCATCGACATCTAAAAAACGATGCTTTCGGATCGACGACGATACCAACATTGAGTTTATAGAGGATCCAGAAACCACACAAGATGGAATACAAATTGTGGATGAAATCGATGAGGATGATTATGTGGAAGAGGGCTTAGTTGTCAAGAATTGA
Protein Sequence: MSENQNKQSCLHCRVFNPKFKYQEIFDEFGTELGLQSLLAKHFDLNVAPNSNEQQLLCEVCVNSLIRLFDIDELQREQDAAKDKAKEPAPEKQLSVAIPQCSAPPSPTVHPATKLVASPKTKTVNTVPVVPKRENSVRINKEPPSPLHIAPTTSQDFDKVKEQAISAPPVKVQSKGVSKELDQEQISRLIRNILNDDEVIVEEVSTPVPEEVEKHEEIVLLDSESIPDTDLDQEEFIYDHEDILDPVLPDLKLKPESRPKVEAEDSQSEGEVDGSETSNVIIFNFVEIKDHDDIGNIFEYLSTVVKTSFEKLSFEWCTDCKHCSKKFQNFNSLLSHVLTAHKSRGNIFRCPLKDCSKELKGSKFLAMHLVLMHAQVADIPIYGSCPECKMTFSNILQYNKHSCAHVIKKKRGVRLYCEMCAQDFPSWKRFNFHNQFHLEKHRPRNCFICDYASNNIDELFQHLNYFHEPEGTLFCDICDRTFRDPEVFTEHNKSHANVSGTTFSCGECMAMFESRGRLNGHMRAMHGSAISCELCSREFASEATYNIHMKTHLIIERDVHVCSKCGQISDNNKNFQDHVNNEESPCFQAKIFTKLLRDAYVCEHCSLYFKEKEDLQRHRETGVHKNGLYWCQPCGKEFSHMKLYRHHIRNFQQIRGDATHRKLEICVFYMCDQEGCSEAYANWNSLYTHKRRTHETSSKQANKTSKSEQEWVCQFCLKQCRSKMSLSVHVARSHNNDNVVCPLCNASYKNQEALDKHHAYWHEPIECPQCFKIVKNRRNYDTHVNVVHSNTKRYACSVCQKGFYHKSEMESHQRLHGQSYNCDQCSFTTRNKKSLSVHVLGQHYKRFAFECKMCSKRFGRQQGLNTHMQRAHGSKFMCRDYFEGGCGRSFINSSQLNVHVRKVHNGTIFLTEEEEEEYISDGPSTSKKRCFRIDDDTNIEFIEDPETTQDGIQIVDEIDEDDYVEEGLVVKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00550405; iTF_00580117; iTF_00488169; iTF_00539109; iTF_00566233; iTF_00615689; iTF_00476090; iTF_00477491; iTF_00546108; iTF_00504130; iTF_00615044;
90% Identity: iTF_00550405;
80% Identity: -