Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000002.1:1167014-1170464[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0055 0.41 11.0 3.3 3 23 321 342 319 342 0.96

2 18 0.63 47 4.6 0.2 1 23 349 374 349 374 0.90

3 18 0.06 4.5 7.8 2.1 2 23 385 406 385 406 0.93

4 18 0.023 1.7 9.1 0.4 3 23 447 468 446 468 0.95

5 18 0.00065 0.049 14.0 0.4 3 23 476 496 474 496 0.95

6 18 0.047 3.5 8.1 0.3 1 23 504 527 504 527 0.96

7 18 0.00044 0.033 14.5 0.3 2 23 532 553 531 553 0.97

8 18 0.78 58 4.3 0.2 2 20 562 580 562 582 0.92

9 18 0.00011 0.0079 16.4 2.5 1 23 601 625 601 625 0.94

10 18 0.045 3.4 8.2 1.8 3 21 632 650 632 651 0.90

11 18 0.0026 0.19 12.1 0.3 1 23 670 695 670 695 0.97

12 18 0.19 14 6.2 1.7 2 23 713 735 712 735 0.94

13 18 0.016 1.2 9.6 0.2 2 23 741 763 740 763 0.92

14 18 0.015 1.1 9.7 0.2 2 23 767 789 766 789 0.95

15 18 3.9e-05 0.003 17.8 2.0 1 23 795 817 795 817 0.97

16 18 0.012 0.88 10.0 1.0 1 23 821 844 821 844 0.93

17 18 3.8e-05 0.0028 17.9 2.3 1 23 850 873 850 873 0.97

18 18 0.00098 0.073 13.4 0.3 1 23 877 905 877 905 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0055	0.41	11.0	3.3	3	23	321	342	319	342	0.96
2	18	0.63	47	4.6	0.2	1	23	349	374	349	374	0.90
3	18	0.06	4.5	7.8	2.1	2	23	385	406	385	406	0.93
4	18	0.023	1.7	9.1	0.4	3	23	447	468	446	468	0.95
5	18	0.00065	0.049	14.0	0.4	3	23	476	496	474	496	0.95
6	18	0.047	3.5	8.1	0.3	1	23	504	527	504	527	0.96
7	18	0.00044	0.033	14.5	0.3	2	23	532	553	531	553	0.97
8	18	0.78	58	4.3	0.2	2	20	562	580	562	582	0.92
9	18	0.00011	0.0079	16.4	2.5	1	23	601	625	601	625	0.94
10	18	0.045	3.4	8.2	1.8	3	21	632	650	632	651	0.90
11	18	0.0026	0.19	12.1	0.3	1	23	670	695	670	695	0.97
12	18	0.19	14	6.2	1.7	2	23	713	735	712	735	0.94
13	18	0.016	1.2	9.6	0.2	2	23	741	763	740	763	0.92
14	18	0.015	1.1	9.7	0.2	2	23	767	789	766	789	0.95
15	18	3.9e-05	0.003	17.8	2.0	1	23	795	817	795	817	0.97
16	18	0.012	0.88	10.0	1.0	1	23	821	844	821	844	0.93
17	18	3.8e-05	0.0028	17.9	2.3	1	23	850	873	850	873	0.97
18	18	0.00098	0.073	13.4	0.3	1	23	877	905	877	905	0.87

Sequence Information

Coding Sequence: ATGTCGGAAAACCAAAATAAACAAAGCTGCCTGCATTGTAGAGTATTCAATCCGAAATTCCGCTACCAGGAGATATTTGATGAGTTTGGTACCGAACTGGGCCTGCAATCCTTGCTGGCCAAGCACTTTGACTTGAATGTGACGCAGGACTGTAATAAGCAGCAGTTGCTGTGTGAGGTTTGCGTCAACAGTCTAATCCGTCTCTTTGACATCGATGAACTGCAGCGGGAACAGGATGCCTTGAAGAATAAGACCAAGACCAAGGAGTCTGCTCCTGAGCAGCAAGTATCTGTGGCCATCCAAGAATCCAGTGCTCCGCCATCCCCAACGGTGGATCCTGCTAAAAAAGAGGTGGCGCCTCCAAAGACTAAGACCGTAAAAACTGTACTTGTTGCTCCTAAAAGAGAACTCATTGTTCGCATCGACAAGGAACCATCAACTCCACCTCAGATTCCTCCGGCTTCTTCGCAGGATTTTGATAAAGTTAAGGAGCAGGAAAGATGCCCTCTCCCCGTCAAAGTAGAATCCAAAAGAGTTCCAAAGGAATCGGATCAGGAGCAGATCAGCCGCCTTATTCGGAACATCCTCAACGACGACGAGGTGATCGTTGAAGAGGTTTCACATTCGATTCCAGTGGAAGTTGAAAAAAATGAGGGAATAGTTCTGCTGGACAGCGAGTCTATCCCCGACACGGATCTAGACCAGGAAGAATTCATTTACGACCATGAAGATATTCTAGACCCGGTGCTGCCAGACTTAAAGTTGAAGACTGAGACTCAACCGAAGGGTCAGGAGGAGGATAGTCAGAGTGAAGGAGACGATGGTAGTGAATCCAGCAACGTCATACTCTTCAACTTTGTTGAGATCAAAGATCATGACGACGTTGGGAACATTTTCGAATACCTGTCCACGGTGGTGAAGACCAGCTTTGAAAAACTCTCTTTCGAGTGGTGCACAGATTGCAAACACTGCTCCCAAAAGTTCCAAAATTTCGAGTCTCTCTTTAGTCACATGTTGAAAGCGCACAAATCTCGAGGTAATGCCTTCAGGTGTCCTTTAAAGGACTGCAGCAAGGAGCTAAAAGGAAGCCAGTTTCTGGCCATGCACTTGGTGCTCATGCATGCCCAAGTGGCAGAAATTCCAATCTATGGCAGCTGTCCGGAGTGCAGAATGACGTTTTCAAACATTCTGCAGTACAACAAACACTCTTGTGCCCATGTTATCAAAAAGAAGCGAGGAGTGCGGCTTTACTGCGAAATGTGTGCTCAGGAATTTCCATCCTGGAAGCGTTTCAACTTTCACAACCAATTTCATTTGGAGAAACACAGGCCGCGCAATTGTTTCATCTGCGATTATGCCAGCAAGAATATTGACGAACTTTTCCAGCACTTGAACTACTTCCATGAGCCAGAGGGAACACTATTCTGTGATATCTGTGATCGCACCTTCCGAGATCCTGAGGTTTTTACGGAGCACAACAAATCCCATGCCAATATTGGTGGCAGCAGCTTTACCTGCAGTGAGTGCATGGCCTCGTTCGAGTCGCGTGGTCGATTGTATGGGCACATGAGAGCCATGCATGGCAGCGCTATAAGCTGCGAACTGTGCTCCCGCGAGTTCGCCACCGAGGCTACCTACAACATTCACATGAAGAAGCACTTGATCATCGAGAGGGACGTCAATGTGTGCACCAAATGTGGCCAGCTGAGCGACAACCTGGAGAACATGCAGGCCCATGTACACAATAAGGAGTCCCCCTGTTTTCAAGCAAAGGTTTCCACAGAACTCCTTCGCGATGCCTATACCTGCGAACATTGCTCGCTGTACTTTAAAGAAAAAGATGACCTGCAACGCCATCGGAAAACGGGCGTCCACAAGAACGGATTGTATTGGTGCCAACCGTGTGGCAAGGAGTTTTCACATATGAAGCTATACCGCCACCACATTCGAAACTTTCAGCAGATAAGAGGAGATGCCACACACCGCAAACTGGAGATTTGTGTTTTATACATGTGTGACCAGGAGGACTGTTCTGAGGCTTATGCGAATTGGAACTCCTTGTATACGCACAAGCGACGAACCCACGAGTCCTCCAGCAAGCAAGCTAAGAATACTTCAAAACCTGAACAAGAATGGGTATGCCAGTTCTGTTTGAAGCAGTGCCGCTCTAAGATGTCGTTGTCAGTTCATGTAGCAAGGAGCCACAATAATGACAATGTTGTCTGTGCTTTGTGTAATGCTTCTTATAAGAACCAGGAAGCTTTGGACAAGCACCATGCCTACTGGCACGAGCCCATTGAATGCCCCCAGTGCTTCAAAATCGTCAAAAACCGTCGAAACTATGATACCCATGTAAACGTGGTCCATTCCAATACGAAGCGCTATGCCTGCAGTGTTTGTCAGAAGGGTTTCTACCACAAAAGCGAAATGGAGTCGCATCAGAGACTCCATGGGCAGTCCTACAATTGTGACCAGTGCAGCTTTACCACCAGGAACAAGAAGTCCCTGTCCGTTCACGTTCTCGGTCAGCACTACAAGCGATTTGCTTTCGAATGCATGATGTGCCACAAGCGATTTGGAAGGCAACAGGGTCTGAACACCCACATGCAGCGAGCTCACGGATCGACGTTCACGTGCCGGGAGTACTTTGAAGGCGGCTGCGGGCGCAGCTTTCTCAACAGTTCCCAGTTGAATGTACATGTGCGAAAGGTTCACAACGGCACTATATTCCTGACCGAGGAAGAGGAGGAGGAATTCATCAACGACGGGCCATCGACGTCTAAGAAACGATGCTTTCGGATCGACGATGATACCCATATCGAGTTTGTAGAGGATGCCGACACCACCCAAGATGGAATGGAAGTTGTGGATGAAATAGAAGAGGATGAGTTCGAAGACGAAGGCTTAGATGCCAAGAATTAA
Protein Sequence: MSENQNKQSCLHCRVFNPKFRYQEIFDEFGTELGLQSLLAKHFDLNVTQDCNKQQLLCEVCVNSLIRLFDIDELQREQDALKNKTKTKESAPEQQVSVAIQESSAPPSPTVDPAKKEVAPPKTKTVKTVLVAPKRELIVRIDKEPSTPPQIPPASSQDFDKVKEQERCPLPVKVESKRVPKESDQEQISRLIRNILNDDEVIVEEVSHSIPVEVEKNEGIVLLDSESIPDTDLDQEEFIYDHEDILDPVLPDLKLKTETQPKGQEEDSQSEGDDGSESSNVILFNFVEIKDHDDVGNIFEYLSTVVKTSFEKLSFEWCTDCKHCSQKFQNFESLFSHMLKAHKSRGNAFRCPLKDCSKELKGSQFLAMHLVLMHAQVAEIPIYGSCPECRMTFSNILQYNKHSCAHVIKKKRGVRLYCEMCAQEFPSWKRFNFHNQFHLEKHRPRNCFICDYASKNIDELFQHLNYFHEPEGTLFCDICDRTFRDPEVFTEHNKSHANIGGSSFTCSECMASFESRGRLYGHMRAMHGSAISCELCSREFATEATYNIHMKKHLIIERDVNVCTKCGQLSDNLENMQAHVHNKESPCFQAKVSTELLRDAYTCEHCSLYFKEKDDLQRHRKTGVHKNGLYWCQPCGKEFSHMKLYRHHIRNFQQIRGDATHRKLEICVLYMCDQEDCSEAYANWNSLYTHKRRTHESSSKQAKNTSKPEQEWVCQFCLKQCRSKMSLSVHVARSHNNDNVVCALCNASYKNQEALDKHHAYWHEPIECPQCFKIVKNRRNYDTHVNVVHSNTKRYACSVCQKGFYHKSEMESHQRLHGQSYNCDQCSFTTRNKKSLSVHVLGQHYKRFAFECMMCHKRFGRQQGLNTHMQRAHGSTFTCREYFEGGCGRSFLNSSQLNVHVRKVHNGTIFLTEEEEEEFINDGPSTSKKRCFRIDDDTHIEFVEDADTTQDGMEVVDEIEEDEFEDEGLDAKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481678;
90% Identity: iTF_00580117;
80% Identity: -