Basic Information

Insect: Drosophila vallismaia
Gene Symbol: -
Assembly: GCA_035047325.1
Location: JAWNPU010000066.1:7883785-7887235[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.031 2.7 8.8 2.3 3 23 316 337 314 337 0.96

2 18 0.25 22 5.9 0.4 1 23 344 369 344 369 0.91

3 18 0.039 3.4 8.5 2.1 2 23 380 401 380 401 0.93

4 18 0.01 0.87 10.3 0.5 3 23 442 463 441 463 0.95

5 18 0.0022 0.19 12.4 0.5 3 23 471 491 469 491 0.95

6 18 0.062 5.4 7.9 0.1 1 23 499 522 499 522 0.96

7 18 0.00027 0.024 15.3 0.3 2 23 527 548 526 548 0.97

8 18 0.97 85 4.1 0.1 1 20 556 575 556 577 0.89

9 18 0.00071 0.062 14.0 1.0 1 23 596 620 596 620 0.91

10 18 0.034 2.9 8.7 2.5 3 21 627 645 625 646 0.93

11 18 0.0023 0.2 12.3 0.5 1 23 665 690 665 690 0.96

12 18 0.21 18 6.2 1.7 2 23 708 730 707 730 0.94

13 18 0.002 0.18 12.5 0.3 2 23 736 758 735 758 0.93

14 18 0.0081 0.71 10.6 0.2 2 23 762 784 761 784 0.96

15 18 4.3e-05 0.0037 17.8 2.0 1 23 790 812 790 812 0.97

16 18 0.0042 0.37 11.5 1.0 1 23 816 839 816 839 0.94

17 18 5.9e-06 0.00051 20.5 1.4 1 23 845 868 845 868 0.97

18 18 9.8e-05 0.0085 16.7 0.2 4 23 875 900 872 900 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.031	2.7	8.8	2.3	3	23	316	337	314	337	0.96
2	18	0.25	22	5.9	0.4	1	23	344	369	344	369	0.91
3	18	0.039	3.4	8.5	2.1	2	23	380	401	380	401	0.93
4	18	0.01	0.87	10.3	0.5	3	23	442	463	441	463	0.95
5	18	0.0022	0.19	12.4	0.5	3	23	471	491	469	491	0.95
6	18	0.062	5.4	7.9	0.1	1	23	499	522	499	522	0.96
7	18	0.00027	0.024	15.3	0.3	2	23	527	548	526	548	0.97
8	18	0.97	85	4.1	0.1	1	20	556	575	556	577	0.89
9	18	0.00071	0.062	14.0	1.0	1	23	596	620	596	620	0.91
10	18	0.034	2.9	8.7	2.5	3	21	627	645	625	646	0.93
11	18	0.0023	0.2	12.3	0.5	1	23	665	690	665	690	0.96
12	18	0.21	18	6.2	1.7	2	23	708	730	707	730	0.94
13	18	0.002	0.18	12.5	0.3	2	23	736	758	735	758	0.93
14	18	0.0081	0.71	10.6	0.2	2	23	762	784	761	784	0.96
15	18	4.3e-05	0.0037	17.8	2.0	1	23	790	812	790	812	0.97
16	18	0.0042	0.37	11.5	1.0	1	23	816	839	816	839	0.94
17	18	5.9e-06	0.00051	20.5	1.4	1	23	845	868	845	868	0.97
18	18	9.8e-05	0.0085	16.7	0.2	4	23	875	900	872	900	0.83

Sequence Information

Coding Sequence: ATGTCGGAAAACCAGGAAAAACAAAGCTGCCTGCATTGTAGAGTATTCAATACGAAATTCCAGTACCAGGAGATATTCGATGAGTTTGGCACCGAGTTGGGCCTCCAATCCTTGCTGGCAAAGCATTTTAACTTCACGGTGACACCGGATTCCAATAAATCTCAGCTGCTTTGCGAGATTTGCGTCAACAGTTTGATTCGCCTCTTTGACATCGACGAGCTGCAGCGGGAACAGGATGCGGCGAAGGATAATGCCAAGGCGACTGCTCCGGCACCTCAAGCTGTTATCCCAGAATGCAGTGCTTTGTCCAAACCCTCCTTGCAGCCTCCTCCAAAACAGGTTGCACTACAAAATACCAAACCCGTTAAAACTGGACCAGTTTTTCTCCAAGGAACCTGTACTCTTGTTAGGAAGGAATCACCACCACCTCAGATATCTCCTACTACATCGAAGGAATTTGATAAGCTCAAAGAGCAGGTCATATCCGGTCCTTCCGTCAAGTCACAATCTAAAAGAATCTCCAAAGAATCGGATCAGGATCAGATCAGCCGTCTTATATGTAATATCCTAAACGAGGATGAAACCATCGTTGAGGAGGTAGCTGCTCCAGACCCAGAGGAACCCGAGAAGCAGGAGGATATAGTTCTGCTGGACAGCGAGTCTATAGCCGATCCTGATATAGACCAGGAAGAATACATTTACGACCATGAAGATATCTTGGACCCGGTTTTGGAGAACCTAAAACTAAAGGCAGAGACTCGACAAAAGGTGGAAGCGGAAGACAGCCAGAGCGAAGGAGAAAACAATGAAAGTGAATCCAGCAACGTGGTGATCTTCAACTTTGTTGAGATTAAAGAACAAGACGACATTAATAACATTTTCGACTACCTTTCTACGGTGGTCAAGACTAGCTTTGAAAAACTCTCTTTCGAGTGGAGTACAGATTGCAAGCACTGCTCGCAAAAGTTTCAGAACTTCAAGGCTCTATTAGGTCACATGCTAAAAGCCCATAAATCTCGAGGTAATGTCTACAAGTGTCCTTTCAAAGACTGCAGCAAGGAGCTAAAAGGATCCAAATTTCTGGCCATGCATCTGGTTCTCATGCATGCCAATCTTGTAGACATTCCAATCTATGGCAGCTGTCCGGAGTGCAAATTGACATTTTCAAACATTCTGCAGTATAACAAACACTCTTGTGCCCATGTTATCAAAAAGAAACGAGGCGTCCGCCTTTTTTGCGAAATGTGTGCCCAATATTTCCCTTCCTGGAAGCGTTTTAACTTTCACAATCAATTCCATTTGGAGAAACACCGTCCCCGCAATTGCTTCATCTGCGATTATTCTAGCACTAATATTGACGAACTTTTCCAGCACTTGAATTATTTCCACGAGCCAGAGGGCACTCTTTTCTGTGATCTTTGTGATCGAACATTCCGAGACCCTGAGGTTTtcacagaccataacaaatCGCATGCCAATGTTAGTAGCACCACCTTTTCCTGCGGTGAGTGCATGGCCGTGTTCGAGTCGCGTGGTCGGTTGAACGGGCATATGAGAGCTATGCATGGCAGCGCGATAAGCTGCGAAATGTGCTCCCGCGAGTTCGCCACCGAGGCTACCTACAACGTTCACATGAAGAAGCACTTAATCATCGAAAAGGACATCTATGTGTGCAGCAAGTGCGGGCTGTTGAGCGAAAAACAGGAGACTATGCTAGCACATATACATAATCAGGAGTCCACCTGTTTCGAAGCAAAGTTTCTCACGGAACTTCTTCGGGATGCCTATGCTTGCGAACACTGCTCGCTCTACTTCAAGGAAAAGGCTGACCTGCGTAGGCATCGGGAAACCGGAGTGCACGAGAACAGATTGTATTGGTGTCATCCGTGTGGGAAGGAATTTTCTCATATGAAACTCTACCGCCACCACATTCGTAACTTTCAACAAATAAAAGGGGATTCCACACACCGCAAGCTGGACATTTGTGTTTTCTACATGTGCGATCAGGAGGGATGTTCTGAGTCTTATGCGAATTGGAATTCTTTATACACGCACAAGCGACGCACCCATGAATCCGCACCCAAGCAACCTGATAAAACTACAAAATCAGAACAAGAGTGGGTGTGCCAGTTTTGTTTGAAGCAATGCCGCTCTAAGATGTCCTTGTCAGTTCATGTAGCGAGGAGTCACAATAATGATAATGTTACCTGCCCTTTGTGTAATGCGTCTTATAAGAACCAGGAAGCTTTGGACAAGCACCATGCCTACTGGCACGAGCCTATTGAATGTCCCCAGTgctttaaaattgtaaaaaacaGACGCAACTATGATACTCATTTAAATGTAGTACATTCGAATACGAAGCGTTATGCCTGTAGTGTGTGCCAAAAGGGTTTCTACCACAAAAGCGAAATGGAATCACATCAAAGGCTCCATGGCCAATTGTACAACTGCGACCAGTGCAGCTTTACCACCAGAAACAAGAAGTCCCTGTCCGTTCACATTCTTGGCCAGCACTACAAAAGATTTGCTTTTGAATGCAAGATGTGCAACAAGCGCTTCGGACGCCGGCAAGGCCTCAACACCCACATGCAACGCGCTCACGGTTCAAAGTTCATGTGCCGGGACTATTTTGAGGGCGGTTGTGGGCGCAATTTTATCAACAGCTCCCAGTTAAATGTTCACGTGCGGAAGGTGCACAATGGCACCATTTTCCTGAccgaggaagaggaggaggacttCATCAGCGATGGGCCATCATCGTCCAAGAAACGCTGCTTTCGCATCGACGATGATACCAATATCGAGTTTATAGAAGATTCAGAAACTATTCCAGATGAAATAGAAATGGTGGATGAAATCATCGATGAGGATGATTACATTAACGAAGATTTAGACGACAGTTCCGTTTCAAAGAATTGA
Protein Sequence: MSENQEKQSCLHCRVFNTKFQYQEIFDEFGTELGLQSLLAKHFNFTVTPDSNKSQLLCEICVNSLIRLFDIDELQREQDAAKDNAKATAPAPQAVIPECSALSKPSLQPPPKQVALQNTKPVKTGPVFLQGTCTLVRKESPPPQISPTTSKEFDKLKEQVISGPSVKSQSKRISKESDQDQISRLICNILNEDETIVEEVAAPDPEEPEKQEDIVLLDSESIADPDIDQEEYIYDHEDILDPVLENLKLKAETRQKVEAEDSQSEGENNESESSNVVIFNFVEIKEQDDINNIFDYLSTVVKTSFEKLSFEWSTDCKHCSQKFQNFKALLGHMLKAHKSRGNVYKCPFKDCSKELKGSKFLAMHLVLMHANLVDIPIYGSCPECKLTFSNILQYNKHSCAHVIKKKRGVRLFCEMCAQYFPSWKRFNFHNQFHLEKHRPRNCFICDYSSTNIDELFQHLNYFHEPEGTLFCDLCDRTFRDPEVFTDHNKSHANVSSTTFSCGECMAVFESRGRLNGHMRAMHGSAISCEMCSREFATEATYNVHMKKHLIIEKDIYVCSKCGLLSEKQETMLAHIHNQESTCFEAKFLTELLRDAYACEHCSLYFKEKADLRRHRETGVHENRLYWCHPCGKEFSHMKLYRHHIRNFQQIKGDSTHRKLDICVFYMCDQEGCSESYANWNSLYTHKRRTHESAPKQPDKTTKSEQEWVCQFCLKQCRSKMSLSVHVARSHNNDNVTCPLCNASYKNQEALDKHHAYWHEPIECPQCFKIVKNRRNYDTHLNVVHSNTKRYACSVCQKGFYHKSEMESHQRLHGQLYNCDQCSFTTRNKKSLSVHILGQHYKRFAFECKMCNKRFGRRQGLNTHMQRAHGSKFMCRDYFEGGCGRNFINSSQLNVHVRKVHNGTIFLTEEEEEDFISDGPSSSKKRCFRIDDDTNIEFIEDSETIPDEIEMVDEIIDEDDYINEDLDDSSVSKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481678;
90% Identity: iTF_00504130;
80% Identity: -