Dsac009789.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010001334.1:17523-37473[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 2e-05 0.0017 19.4 2.7 1 23 203 225 203 225 0.98 2 30 0.00074 0.065 14.4 0.3 2 19 257 274 256 277 0.93 3 30 1.8e-05 0.0016 19.4 0.3 3 23 309 330 307 330 0.96 4 30 7.1 6.4e+02 1.9 0.4 2 14 351 363 350 370 0.79 5 30 0.022 2 9.8 0.6 1 23 381 404 381 404 0.97 6 30 0.0024 0.21 12.8 0.1 1 23 425 447 425 447 0.96 7 30 9.4e-05 0.0084 17.2 2.1 2 23 494 515 493 515 0.97 8 30 0.0002 0.018 16.2 2.0 2 23 556 578 556 578 0.97 9 30 0.00047 0.042 15.0 0.9 1 23 628 651 628 651 0.95 10 30 0.0028 0.24 12.6 0.2 1 23 711 733 711 733 0.97 11 30 0.0098 0.87 10.9 5.5 2 23 745 766 744 766 0.96 12 30 0.043 3.8 8.8 0.8 2 23 778 799 777 799 0.96 13 30 0.013 1.2 10.5 1.2 1 23 809 831 809 831 0.97 14 30 0.62 55 5.2 7.4 1 23 860 882 860 882 0.96 15 30 4.8e-05 0.0043 18.1 3.2 1 23 893 915 893 915 0.98 16 30 1.1e-05 0.00098 20.1 0.5 1 23 923 945 923 945 0.97 17 30 0.001 0.09 14.0 0.3 2 23 965 987 964 987 0.97 18 30 0.73 65 5.0 0.3 1 23 1005 1027 1005 1027 0.91 19 30 0.28 25 6.3 2.9 1 23 1034 1056 1034 1056 0.96 20 30 0.015 1.3 10.3 2.4 2 23 1067 1089 1066 1089 0.95 21 30 0.024 2.2 9.6 0.1 2 23 1112 1133 1111 1133 0.95 22 30 4.6 4.1e+02 2.5 0.8 2 23 1137 1158 1136 1158 0.90 23 30 8.9 7.9e+02 1.6 3.4 2 23 1176 1198 1175 1198 0.90 24 30 0.0039 0.35 12.1 0.2 2 23 1214 1235 1213 1235 0.95 25 30 1.4 1.2e+02 4.1 4.5 5 23 1245 1263 1242 1263 0.94 26 30 0.014 1.3 10.4 0.8 2 23 1274 1296 1273 1296 0.95 27 30 1.9 1.7e+02 3.7 6.0 2 23 1313 1331 1313 1331 0.89 28 30 0.11 9.5 7.6 0.7 2 23 1404 1425 1403 1425 0.94 29 30 0.0031 0.28 12.4 0.6 2 23 1436 1458 1435 1458 0.96 30 30 1.3 1.2e+02 4.2 2.6 2 20 1496 1514 1495 1516 0.89
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTGGGAAAATGCAGGCTCTGTTTGAAATTAGGCGACTTTTATTCTATTTTCACGGTCGACAATGCCGTCCAACTCGCAGAAATGGTTATGGATTGTGCCCGGGTGAAGATATATGAAGGAGATGGGCTGCCTGATAAAATTTGTTCTGAGTGTGTACAAAAGCTGAGTAGTGCCTATATTTTTAAACAGCAGTGTGAGAGGTCAGATCAGGAGTTACGGCGGAACTATATACCTCCACCAGGGTTTTCCTCTACTCCACAACCTCCCAACAGGCAAAGCAGCGATTCGGCTTTCTCCACTCACACAGACATATCAAATCAGACAAAACCATCATCGTCCACTGAAGGCATTACAACACCTGCCAAGCGCAGCCGAAAGCGAAGTCGTGAAAGCGTCGACAATACCTCGGTTAGTAGTCGTTCGCACGACTATGCACCGGCCGTCAAACGAGTCTCAGAACTCAGGAGGTCGCAGAAACGTCGCCGCGCCGATACTAGCAATAACTCTTTCATAGACTCTGATTATGACGACCGCAGCGTTTCTCAATTCTCCGGTGGCGAAACTGATTCTGATGAACCGCTCCTTAAAAATGAACACAAATGCAAGGAATGTGATAAAGTATTCACCACATATAAAGGGCTGTCGAACCATGAAAGGATTCATTCCAAAAAAGAAAAGCTAACTCAAAACCAAGTAGTGAATATCCCAAAGAAAATCGACGTTTCAAAAGATGCTATAGACGACGATAACAAGTTGAGCTGTGAAAAATGTGGAAAGACATTCAAGCTTAAGATTATGTTGAAGAGGCACAATGAAGTATGCGGAACCACACCTCAAGTATCTCCACAGAAAGAGTTGCTCATATCATTAGAGCCGATAGACGCGAAACCCCAGTCGCCGGACAAAATAGATTGTGACATTTGCACAGCAAAATTCAAAACCTTTGATAATTTAGAAAAACATATGCGAGTAGTTCACGCTGCGATTCCCAAAAAGAAGAAAGCGAAACCGGTGACGCAAAATGGGAATACGGTAATTCCGTGCTTGTACTGTCAGAAGGAGTTTGACGACTATAACACGCATAATGCCCATTTCAATGCTTGCCCCGAGAAGGTCGACACGGCTATTTTCGAATGTCCAGCTTGCACAAAAGTGACATACAAAAGGAGTGCATACTTTCTACATCTAAGAAACATACATTTTATTTATCAAAACTTTGAAAAAAAACCTTCGGTTGAAGTATCGTCGCCCCAGGGGTCGTTCGAATGTCGCGTCTGCAGCAAGCGGTTACCGTCGCAGGATCAGCTGATCGCCCACCTTGCTGAGCACATGACCCACACCGAGGAGGATAATGATACTGCAGATGTCGAATTAGTGAATGACGATGAATCCAGAGCCAGCACAATCGACGATTCAGTATCAGTAGTCTCCGACTACAGTAGTTCACATGTTTCTTCAGGCCCCTTGAAATGTCGCATCTGTGATAAGAGATTTAAGTACAAGAAAGCTTTAGAGACTCATGAACAGCGGCATTTGGAGTCGGACGTCAAAACCGAACCTCCAGATAAGAGTCAAACCAGTCTGTTGTGTGAAACGAGCGGTCCACGAACCGAATTAGAAACAGAGTCTAGTCAAGAGGAAGGAGACGACAACACTTGTGACATATGTGAGAAGCAGTTTTCATACAAACGTTTACTCATTCAACACAAACGGACGAAACATAACCAATGTTCGGGAACGAAACGAGCTAAGATAAATTTGAAAGATTGTTCCGTACGGTGTCTCATATGCGACATAGAGATGAAAGTGAGCGCTATAAACGAGCACAACCAAAAACATATATCTGTCAACATGAAACCGAGAAATCTATACAGTTGTGCACTGTGTGAAGAAACATTCAAGAGCTGCAGCGCGTTGGCCAACCACATAAAGTTCGTTCATCGGCTGAAGCAACCTCCTAAACCGAAACCTCCGAAAATGTTGGAGGGTGGGTCCGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGATGCGCTCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCAACACCGGGGAGCCGCTCGTTAACATGAGCGGGTTCACTTGTCCGATATGCCAGAAGAAAATGCCGACCCTGATATCTCTCAAGAGACACGTCAACTGGCACTCGAACGTCGGCAACAATATCGAGAAAAAGATCGAGTGTTTCGTGTGCAAAGAGTCGTTCCGGTTTCAATGTCACTACAAGCTGCACATGCGCGAACATTACCGCGATACGAATCTAGATCCGCAGCACCTCACATGCGCCATCTGTGGCCGCAAGAGCAAACACCTTCGCGCCGCCCAAGCTCATATGAACTTTCACAAGCAGACCCGCTTCAAGACCAAGGACTACCAGTGCTCTATTTGCAAACGGGTGTTCCAGTTTCGAAAAGTCTATTTGTCGCATATGGTGATACATCTGAAACGTGGCGAGAGTGTGCAGAATACTATCGTGGGCGATGCGCTTCCTAACTCCGTGGATAAAACAGTTTTCGATGGAACCCACACCTGTCACCTCTGCGGGAAGGTGTGCGACTCTGAAAATTCGCTGAAATGCCACGTGAGATGGCACAATTCCAAATCTTCACTTTACGGAGCTAGACACGAATGCCACATATGTGGTTTAGTATTCACGAATAAAAGAAGACTAGAAATTCACACAAGAAGCCATTACGAAGATGATAACGGCCCCTTCAAATGCACTATATGCGGCAAAGGCTTTATTGATGAGGAGTATTTCCGTAGACACGTCAAAGGACATAATTTCGATCATCAGTCCCATAAAGATAGAATAGATAAGTTGAGAAAAGACAAAATCAAATGTCCTATATGCACCCGTTTTTACCCTGACTTGGTGAGACTGATTCGTCACTTGAGAAGAACTCACCCCGAGAGTAAGATGATCAAAACCGATCCAGATGCTCCTCCGCCGAGCTACTATTCGTGTAAATTGTGCGCCAAAGTGTTTCTAGACGAAAGGCGACTTCAAAATCATGAGGAAGCACATCTTAGAAAACCTCTATTCTTTAAATGCAAATTTTGTGGGAAAAACACGATATCGATGAAAAACCACAATGTACATATTAAAGCTCACTTGACAAGGAATTATTTTGATAATCCCTTGAAATGTACACAATGTGAAGAGACTTTTGTAAAAGGATACGATTTACATCATCATTTGCGCGATGTCCACAATATCATAGAAAATTGGATAGCAGAACGCACCGAACAAACATTAGAAGGTCCACTCAAGGAGTTACAATGTGCTCTCTGCTTAAAAGTGTTAGCCAGTAAAGGCAACTATGAGAGACACATCGATTACCACAACACTTTAAGGTGCAACTATTGTTTTGATTACTTCAGCACTCTCAGATTTTTAGAAGGTCATTTGGCATTCCATTGTGATAAAAAGAAATTGATAGGAGATACAGAGATATATCCTAAAAAAATTAAATGCAATGTCTGTTACAAAGCTTTCCATTTGCAAGTGAAGTTAGACTGTCATCTTCGAATTAAACACGACATAAAAGACTTCAAGAAGGCATCTTCTGACAAAAAAGAAACTGTGTGCGATTACTGTTTTAGAGTTTTTGAAAACGAGGAAGCTTTAACGTCTCACAAAATCTACCACCGGACCATCGGATATTATGGTTGTATATACTGTAAGAGGAAATTTAACACCCTCACTCTTTATAGGAAACATAAAAATCATCACTTTTCACAGTTGAATGTTGACAATCCAACTAAGTGCGAACACTGCGACGAAACTTTTGTCGCGTTTAGAGAGATGATTTACCACATGAGGGACGTCCACGGCGACGACAAAGAGTGGATCGTCATGCCAAAAGATTCAATCGAGGAGACTTGCCACATATGTAACAAAACTTTCTTCAATCTCCATAGGCATTTGGATTACCACGAAGAGAACAGGTGCAAGAAATGCGCAGAATACTTTTTCTCTAGAAACGATTACGATAATCATCTCTGTGCCATAGAGAGCGATGACGAGACGCTGCAGACTAACGGCAACAGTTGTATGCCGGCCTACGAAGAGTGTCGATTCTGTTTCAAGCCGGTCACTAGGAGCAACTCGAAGAAACTGCACGATAACATTCATAAGACTTCCGGCGCGATATCGTGCCGTTTCTGTGATCTCAAATTCAAAACGATGGACGCGTTTAACATTCATGCGTTCTCGCACAGAAGCAGGAAATATAACAAGAAACCTATAAAATGTAGGAAGTGCGGCGAAAAGTTTGTGAAATACGGTCCCTTCATAAAGCATATGAAATATGTGCACAAATCCACAAAGAAGGTTCATTATAGGGCTATCGTGAAGCCGGAAAGATGCGTAGTGTGCGGAGACGACTTCCCAAATTTGCACAACCACTATCGCGCGCATCTGCAGAATCAGTGCCAACAGTGTAACAAATATTTTACATCTGCTAAAGTGTTCTCGATGCACAAATGCGACCAAGACGATTTGGATCCGTCAAAAGTGTTCGTTTGCGACGAAAACTTGCCAGTACTGATTAATACTTACGTACCGAAGGATTTGAAAGATGACGAAAAGTATTACGGCCGAAGCGACGACGAGGATGAGGAAGTGGAAGATGAACCGCCAGTAGCGCGTCGCGAGAAAAGTAGTAACAAGCGGCCGAAGCAGTCTAAACCGCCAGAACTTAGTCAGGACGAGAAAGAGTTGCATTCGATGGTCTCATCTCCGATAATATCGGATGTATTATCACTCTACCAGCAGAAGGAAATAGCCGCTGACACAAAAAAAATTGTCGAAGACAAGGATATTGTAACATTAATAGATGACGATTCTATGGATATCGATATTAGTATACCTGTCATTACGATAGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCARVKIYEGDGLPDKICSECVQKLSSAYIFKQQCERSDQELRRNYIPPPGFSSTPQPPNRQSSDSAFSTHTDISNQTKPSSSTEGITTPAKRSRKRSRESVDNTSVSSRSHDYAPAVKRVSELRRSQKRRRADTSNNSFIDSDYDDRSVSQFSGGETDSDEPLLKNEHKCKECDKVFTTYKGLSNHERIHSKKEKLTQNQVVNIPKKIDVSKDAIDDDNKLSCEKCGKTFKLKIMLKRHNEVCGTTPQVSPQKELLISLEPIDAKPQSPDKIDCDICTAKFKTFDNLEKHMRVVHAAIPKKKKAKPVTQNGNTVIPCLYCQKEFDDYNTHNAHFNACPEKVDTAIFECPACTKVTYKRSAYFLHLRNIHFIYQNFEKKPSVEVSSPQGSFECRVCSKRLPSQDQLIAHLAEHMTHTEEDNDTADVELVNDDESRASTIDDSVSVVSDYSSSHVSSGPLKCRICDKRFKYKKALETHEQRHLESDVKTEPPDKSQTSLLCETSGPRTELETESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNQCSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQKHISVNMKPRNLYSCALCEETFKSCSALANHIKFVHRLKQPPKPKPPKMLEGGSELADFCEVVVTKAEPLDALQSHNDFGEVPGNTGEPLVNMSGFTCPICQKKMPTLISLKRHVNWHSNVGNNIEKKIECFVCKESFRFQCHYKLHMREHYRDTNLDPQHLTCAICGRKSKHLRAAQAHMNFHKQTRFKTKDYQCSICKRVFQFRKVYLSHMVIHLKRGESVQNTIVGDALPNSVDKTVFDGTHTCHLCGKVCDSENSLKCHVRWHNSKSSLYGARHECHICGLVFTNKRRLEIHTRSHYEDDNGPFKCTICGKGFIDEEYFRRHVKGHNFDHQSHKDRIDKLRKDKIKCPICTRFYPDLVRLIRHLRRTHPESKMIKTDPDAPPPSYYSCKLCAKVFLDERRLQNHEEAHLRKPLFFKCKFCGKNTISMKNHNVHIKAHLTRNYFDNPLKCTQCEETFVKGYDLHHHLRDVHNIIENWIAERTEQTLEGPLKELQCALCLKVLASKGNYERHIDYHNTLRCNYCFDYFSTLRFLEGHLAFHCDKKKLIGDTEIYPKKIKCNVCYKAFHLQVKLDCHLRIKHDIKDFKKASSDKKETVCDYCFRVFENEEALTSHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIVMPKDSIEETCHICNKTFFNLHRHLDYHEENRCKKCAEYFFSRNDYDNHLCAIESDDETLQTNGNSCMPAYEECRFCFKPVTRSNSKKLHDNIHKTSGAISCRFCDLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKYVHKSTKKVHYRAIVKPERCVVCGDDFPNLHNHYRAHLQNQCQQCNKYFTSAKVFSMHKCDQDDLDPSKVFVCDENLPVLINTYVPKDLKDDEKYYGRSDDEDEEVEDEPPVARREKSSNKRPKQSKPPELSQDEKELHSMVSSPIISDVLSLYQQKEIAADTKKIVEDKDIVTLIDDDSMDIDISIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319137; iTF_00284752; iTF_00382928; iTF_00035934; iTF_00681811; iTF_00682671; iTF_00683556; iTF_01335255;
- 90% Identity
- -
- 80% Identity
- -