Samb012047.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992503.1:6078750-6089001[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00059 0.15 14.9 0.7 2 23 203 224 202 224 0.97 2 29 0.0011 0.28 14.0 0.7 2 20 254 272 253 274 0.92 3 29 1.8e-05 0.0045 19.6 0.5 3 23 306 327 304 327 0.96 4 29 0.0085 2.1 11.2 0.5 1 23 378 401 378 401 0.96 5 29 0.011 2.8 10.9 0.1 1 23 422 444 422 444 0.96 6 29 9.8e-05 0.024 17.3 2.3 2 23 487 508 486 508 0.96 7 29 0.00062 0.15 14.8 3.9 2 23 544 566 544 566 0.97 8 29 0.0016 0.38 13.6 0.7 1 23 616 639 616 639 0.95 9 29 0.0031 0.76 12.6 0.2 1 23 699 721 699 721 0.97 10 29 0.014 3.5 10.5 5.7 2 23 733 754 732 754 0.97 11 29 0.096 24 7.9 1.8 2 23 766 787 765 787 0.96 12 29 0.0074 1.8 11.4 1.1 1 23 797 819 797 819 0.98 13 29 0.89 2.2e+02 4.9 7.5 1 23 848 870 848 870 0.97 14 29 0.003 0.75 12.6 1.6 1 23 881 903 881 903 0.95 15 29 8.2e-06 0.002 20.7 1.0 1 23 911 933 911 933 0.98 16 29 0.0005 0.12 15.1 0.3 2 23 953 975 952 975 0.97 17 29 0.061 15 8.5 0.3 1 23 993 1015 993 1015 0.94 18 29 0.23 56 6.7 3.9 1 23 1022 1044 1022 1044 0.98 19 29 0.017 4.1 10.3 2.4 2 23 1055 1077 1054 1077 0.95 20 29 0.0062 1.5 11.7 0.1 2 23 1100 1121 1099 1121 0.95 21 29 1.1 2.8e+02 4.5 0.2 2 20 1125 1143 1124 1144 0.91 22 29 0.0082 2 11.3 0.6 2 23 1202 1223 1201 1223 0.95 23 29 4.6 1.1e+03 2.6 2.0 5 23 1233 1251 1230 1251 0.92 24 29 0.016 3.9 10.4 0.8 2 23 1262 1284 1261 1284 0.95 25 29 5.8 1.4e+03 2.3 6.5 2 23 1301 1319 1301 1319 0.89 26 29 2.6 6.4e+02 3.4 2.0 2 21 1323 1342 1323 1343 0.94 27 29 0.42 1e+02 5.9 0.7 2 23 1392 1413 1391 1413 0.93 28 29 0.0035 0.85 12.5 0.6 2 23 1424 1446 1423 1446 0.96 29 29 0.34 84 6.2 2.3 2 21 1484 1503 1483 1504 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTGGGAAAATGCAGACTTTGTTTGAAGCTAGGCGACTTTTATTCCATCTTTACGGTGGACAATGCCTTGCAACTGGCCGAGATGGTTATGGAATGTGCCCGGGTGAAAGTGTATGAGGGAGATGGGCTGCCTGACAAAATTTGCTCTGAGTGCATACAAAAGCTCAGCGGCGCTTACATATTTAAGCAACAGTGCGAGAGATCGGATCAGGAGCTACGGCGCAACTATGTGCCTCCGCCAGgttTCTCTGTCACCCCACCACCTCCAAACAGGCAAAGTAGCGATTCCGCATTCTCCACTCATACTGATCTGTCAAGTCAGAATAAGCCGTCATCTTCCACCGAGTGCGCCGCCACCCCCGCCAAGCGCAATCGGAAGCGAAGTCGCGAGAGTCTCGACAACACCTCCGTCAGCAGCCGCTCGCACGACTACACGCCAACCACCAAGCGCGTGTCCGAGCTCAGGGCCCCGGAGAAGCGGCGCCGCACGCAGCGCGTCACCAACTCCTTTGTGGACTCCGACTTTGACGACAACGGCTCGCAGTTCTCACCCCCAGAAACGGATTCGGACGAGCCGCTTCTTAAAAATGAACTCAAATGCACAGAATGTGACAAAGTTTTTCAAAGCATTAAGAGCCGCGCCAATCATATGAGAGTCCATTCGAAACAAGAAAAGCTAGGCGAGAACGAAGTAGTCGTCGTCCCAAAAGATACAATACGGGACGCAACGGATGACGACGACAAGTTGAACTGTGATAAATGCGGGAAAACCTTCAAACTAAATATAATGTTGAAGAGGCATCACGACGTTTGCGGGAAATCACCTCAAGTGTCACCGCGGAAGGAGCTTCTCGTGAGCTTAGAGCCGATCGACGCTAAGCCGACGGTGACGAATAAGATAGACTGTGAAATGTGCACGACTAAATTTAAAACTATGGACAACCTGGAGAAGCACATGAGAGTGGTGCATGCCGCCGTCCCCAAGAATCGCAAATCGGAGCCGATCGTGCAGAACGGGTACGCGACGGTGCCCTGCCTGTACTGCCGGCAGCCGTTCGAGGATTACTACGAGCACAGTTCGCATTTCAACGTGTGCCCGGAGAAGGAGGATACGTCAATTTTCGACTGTCCTATCTGCAGGAAGGTGACGTACAAGAAGGCCGCTTACTTCATCCACCTGAAGAGCATGCACTTCGACGCGCGGGCGTCGGCGGGCGACAAGAAGTCGACGGCGGGGTCGGTGCTGGAGGCGTTCGTGTGCCGCATGTGCAACACCAAGCTGCCGTCGCAGGACCAGCTCATCACGCACCTCGCCGCGCACATGTCTAACATGGACGAGCCCGACGCGGCGGTCGGCGACGACGACTCGAGACCGAGCACAATAGACGATTCAGTGTCTGTCGCCTCAGAGTTTGGCAGCTCAAAATATGTATCCAATGGCCCCCTGAAGTGCAGCATGTGTGACAAAAGATTCAAATACAAAAAGGCACTACAGACCCACGAACTCAGACATTCAGAGTTAGACATAAAAGGGGAACCCCCCGACAAGAGCTTGTTGTGTGAAACGCAGCGCCCAGACGCAGAGACCGAGTCTAGTCAGGAGGAGGGCGACGACAACACGTGTGATATATGCGAAAAGCAGTTTTCATACAAGCGCCTGCTCATCCATCACAAGCGCACGAAACACAACCAGTGCTCGGGGACGAAGCGCGCTAAAATCAACCTGAAGGACTGTTCCGTGCGGTGTCTCATATGCGATATAGAGATGAAAGTGAGTGCCATCAACGAGCACAACCAGAAACATATATCGAAGAACATCAAGCCGAGGAATATGTACAGCTGCGCTGAATGCGGGGAGAAAGTCAAGAGTTGTAGTTCGTTGGCCAGCCACATCAAGTTCGTCCACCGGCTGAAGCAGGAGCCGAAGCCGAAGCGGCCGAAGATGCTGGAGGGCGGAAACGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGACTTCGGAGAGGTTCCGGTCGCCGACGGCGCGCCGGTCGTGAACCTGATGGGGTTCACGTGCCCAATTTGTCAGAAGAAGATGCCCACTCTCATATCTCTGAAGAGACATGTCAACTGGCATGAGAACGTGGGAAACAATATCGAGAAAAAGGTCGAATGCTTCGTCTGCAAGGAGACATTCCGTTTCCAATGCCACTACAAGATGCACATGCGCGAGCACTACCACGACACGAACTTGGACCCGAAACACCTCACGTGCAGCATCTGCAACCGCAAGAGCAAGCACCTGCGCGCGGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAGTCCAAGGACTACCAGTGCTCCATCTGCAAGCGCGTGTTCCAGTTCCGCAAGGTGTACCTGTCGCACATGGCGATCCACTTCAAGCGCGGCGAGAGCGTCCAGAACACCATCGTGGGCGACGCGCTGCCCAGCTCCGTGGACAAGAGCGTGTTCGACGGCACGCACACCTGCCACCTGTGCGGCAAGGTGTGCGACTCGGACAACTCGCTCAAGTGCCACATCCGCTGGCACAACTCCAAGTCGTCGCTGTACGGCGCGCGCCACGACTGCCGCCTCTGCGGGCTCGTGTTCACCAACAAGCGGCGGCTGGAGCTGCACACGCGGGCGCACTACGAGGACGAGAACGGGCCCTACAAGTGCTCCATCTGCGGCAAGGGCTTCATCGACGAGCAGTACTTCCGCAGACACCAGAAAGGCCACAACTTTGACCACCAGGTGCACAAAGACAGAATTGATAAGCTGAGGAAGGATAAAGTCAAGTGTCCTATATGCAATCGGTTCTATCCCGATTTGGTGAGACTGATTCGCCACTTGAGGAGGACGCATCCCGAGAGTAAGATGATCAAAACTGACCCGGACGCCCCCCCGCCCATCTACTATTCGTGCAAGCTGTGCGCCAAGGTGTTTATGGACGAGCGAAGGCTTCAAAGTCACGAAGAGGCGCATTTGCGAAAACCGTTGTTCTTTAAGTGTAAATTCTGCGGGAAAAACACTATATCAATGAAAAACCATAATGTTCACATTAAATCCCATTTGACGCGCAACTACTTTGATAATCCTTTGAAATGTACACAATGCGAGGAGACATTCGTGAAAGGATACGATTTGCACCATCATTTGCGCGACGTCCATGACATCAAAGAGAGATGGATAGCGGAGCGGACGGAACCGACCATAGGAGGGCCGCTGAAAGAGCTGCAGTGCGGCATCTGCCTGAAAGTCCTGGCCAGCAAGGGCAACTACGAGAGGCACATCGACTACCACAACACGCTGCGGTGCAACTACTGCTTCGTGTACTTCAGCACTTTGAGGTTCTTAGAAGGCCATCTAGCATTTAGCTGCGACAAGAAGAAATTAATAGGAGATACTGAAATATATCCCAAAAGAATTAAATGCCACATTTGCTATAAGGCTTTCCATTTGCAAGTGAGGTTAGATTGTCATTTGCGAACCCAACACGACATCAAAGTGTTCAAAGAAAGATCTTCTAACAAGAAAGATACTGTGTGCGATTTCTGCTTTAGAGTATTCGAAAACGAAGACTCTCTAACTACACATAAAATCTACCATCGTACGGTCGGTTTTTATGGCTGCATATATTGCAAAAGAAAGTTTAACACCCTCACCGTATATAGGAAGCATAAAACTTATCATTTCTCACAGTTGAATGTCGACAATCCGACCAAGTGCGAACATTGCGACGAAACGTTCGTCGCCTTCAGAGAGATGATCTACCACATGCGAGACGTGCACGGCGACGACAAGGAGTGGATCACTATGCCGAAAGACAGCATCGAAGAGACTTGCCACATCTGCAACAAGAAGTTCTTCAACCTCCACAGACATTTGGATTACCACGAAGAGAACAGATGTAAGAAATGCGCGGAGTACTTCTTCTCCAGATCAGATTTCGACAATCATCTTTGTGCCATAGAGAGCGACGACGAGGCGCTGCAAGCGAACGGAAACAGTTGCTTGCCGGCTTACGAAGAGTGCCGGTTCTGCTTCAAGCCGGTCACCAGGTCCAATTCGAAGAAACTGCACGACAACATTCACAAGACCTCCGGGGCGATATCGTGCCGTTTTTGCGAGCTCAAATTCAAGACGATGGACGCGTTCAACATCCACGCGTTCTCGCACAGGAGCAGGAAATACAACAAGAGGCCAATAAAATGTCGCAAGTGCGGCGAGAAGTTCGTCAAGTACGGCCCCTTCATAAAGCACATGAAGTACGTGCACAAGTCCGCGAAGAAGGTGCACTACCGCGCGGTGGTGCGGCCCGAGCGCTGCGTGGTGTGCGGCGACGAGTTCCCCAACCTGCACAACCACTACCGCGCGCATCTGCTCAACCAGTGCCAGCTCTGCAACAAGTACTTCACCTCCGCCAAGGTGTTCAGCCAGCACCAGTGCGACAAGGAGGACTCGGATCCCTCCAAAGTGTTCGTGTGCGACGAAAACCTCACCGCTCTCATCAACGCTTACGTGCCCAAGGATTTGAAAGACGACGAGAAATACTACGGACACAGCGGCGACGATGATGAGGAGGaagtgccgccgccgccgccgactgtgaCGCTCGACCACGACGGGAGCGAGGCGAGCCAGCCCGAGCCGGCCGCCGAGCTCACGCAGGACGAGAAGAATCTGCATTCCATGGTGTTATCCCCGATTATATCTGACGTGCTGTCGCTTTATCAGCAGAAGGAAAAGAAAGAAGATTGTAAACAAATTGTGGACGACAAGGATATTGTGAATTTGGTAGACGATGACGATTCTATGGATATAGATATTAGCATACCGATCATAACGATCGACTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMVMECARVKVYEGDGLPDKICSECIQKLSGAYIFKQQCERSDQELRRNYVPPPGFSVTPPPPNRQSSDSAFSTHTDLSSQNKPSSSTECAATPAKRNRKRSRESLDNTSVSSRSHDYTPTTKRVSELRAPEKRRRTQRVTNSFVDSDFDDNGSQFSPPETDSDEPLLKNELKCTECDKVFQSIKSRANHMRVHSKQEKLGENEVVVVPKDTIRDATDDDDKLNCDKCGKTFKLNIMLKRHHDVCGKSPQVSPRKELLVSLEPIDAKPTVTNKIDCEMCTTKFKTMDNLEKHMRVVHAAVPKNRKSEPIVQNGYATVPCLYCRQPFEDYYEHSSHFNVCPEKEDTSIFDCPICRKVTYKKAAYFIHLKSMHFDARASAGDKKSTAGSVLEAFVCRMCNTKLPSQDQLITHLAAHMSNMDEPDAAVGDDDSRPSTIDDSVSVASEFGSSKYVSNGPLKCSMCDKRFKYKKALQTHELRHSELDIKGEPPDKSLLCETQRPDAETESSQEEGDDNTCDICEKQFSYKRLLIHHKRTKHNQCSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQKHISKNIKPRNMYSCAECGEKVKSCSSLASHIKFVHRLKQEPKPKRPKMLEGGNELADFCEVVVTKAEPLDVLQSHNDFGEVPVADGAPVVNLMGFTCPICQKKMPTLISLKRHVNWHENVGNNIEKKVECFVCKETFRFQCHYKMHMREHYHDTNLDPKHLTCSICNRKSKHLRAAQAHMNFHKQTRFKSKDYQCSICKRVFQFRKVYLSHMAIHFKRGESVQNTIVGDALPSSVDKSVFDGTHTCHLCGKVCDSDNSLKCHIRWHNSKSSLYGARHDCRLCGLVFTNKRRLELHTRAHYEDENGPYKCSICGKGFIDEQYFRRHQKGHNFDHQVHKDRIDKLRKDKVKCPICNRFYPDLVRLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAKVFMDERRLQSHEEAHLRKPLFFKCKFCGKNTISMKNHNVHIKSHLTRNYFDNPLKCTQCEETFVKGYDLHHHLRDVHDIKERWIAERTEPTIGGPLKELQCGICLKVLASKGNYERHIDYHNTLRCNYCFVYFSTLRFLEGHLAFSCDKKKLIGDTEIYPKRIKCHICYKAFHLQVRLDCHLRTQHDIKVFKERSSNKKDTVCDFCFRVFENEDSLTTHKIYHRTVGFYGCIYCKRKFNTLTVYRKHKTYHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWITMPKDSIEETCHICNKKFFNLHRHLDYHEENRCKKCAEYFFSRSDFDNHLCAIESDDEALQANGNSCLPAYEECRFCFKPVTRSNSKKLHDNIHKTSGAISCRFCELKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFIKHMKYVHKSAKKVHYRAVVRPERCVVCGDEFPNLHNHYRAHLLNQCQLCNKYFTSAKVFSQHQCDKEDSDPSKVFVCDENLTALINAYVPKDLKDDEKYYGHSGDDDEEEVPPPPPTVTLDHDGSEASQPEPAAELTQDEKNLHSMVLSPIISDVLSLYQQKEKKEDCKQIVDDKDIVNLVDDDDSMDIDISIPIITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00448353;
- 90% Identity
- -
- 80% Identity
- -