Elac002140.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387341.1:23102582-23111433[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 6.1e-05 0.0079 17.4 2.1 1 23 200 222 200 222 0.99 2 29 0.00054 0.07 14.5 0.8 2 20 253 271 252 273 0.93 3 29 1.6e-05 0.002 19.3 0.3 3 23 304 325 302 325 0.96 4 29 0.017 2.2 9.7 3.1 1 23 376 399 376 399 0.97 5 29 0.075 9.7 7.7 0.0 1 23 420 442 420 442 0.95 6 29 0.00025 0.032 15.5 1.6 2 23 493 514 492 514 0.96 7 29 0.00015 0.019 16.2 2.0 2 23 550 572 550 572 0.97 8 29 0.00099 0.13 13.6 0.4 1 23 622 645 622 645 0.95 9 29 0.0021 0.27 12.6 0.2 1 23 705 727 705 727 0.97 10 29 0.0079 1 10.8 5.6 2 23 739 760 738 760 0.96 11 29 0.13 16 7.0 1.2 2 23 772 793 771 793 0.96 12 29 0.005 0.65 11.4 1.1 1 23 803 825 803 825 0.98 13 29 7.9 1e+03 1.4 7.6 1 23 854 876 854 876 0.94 14 29 0.00069 0.089 14.1 1.4 1 23 887 909 887 909 0.95 15 29 2.9e-05 0.0037 18.5 0.7 1 23 917 939 917 939 0.97 16 29 0.0009 0.12 13.8 0.2 2 23 959 981 958 981 0.97 17 29 0.029 3.7 9.0 0.3 1 23 999 1021 999 1021 0.94 18 29 0.91 1.2e+02 4.3 4.0 1 23 1028 1050 1028 1050 0.97 19 29 0.011 1.4 10.3 2.4 2 23 1061 1083 1060 1083 0.95 20 29 0.0042 0.54 11.7 0.1 2 23 1106 1127 1105 1127 0.95 21 29 0.77 1e+02 4.5 0.2 2 20 1131 1149 1130 1150 0.91 22 29 0.0012 0.15 13.4 0.5 2 23 1208 1229 1207 1229 0.95 23 29 1.1 1.4e+02 4.1 4.5 5 23 1239 1257 1236 1257 0.94 24 29 0.011 1.4 10.4 0.8 2 23 1268 1290 1267 1290 0.95 25 29 0.041 5.2 8.6 2.9 2 23 1307 1325 1307 1325 0.94 26 29 3.4 4.3e+02 2.5 2.2 2 21 1329 1348 1329 1349 0.93 27 29 0.082 11 7.6 0.7 2 23 1398 1419 1397 1419 0.94 28 29 0.0024 0.31 12.4 0.6 2 23 1430 1452 1429 1452 0.96 29 29 0.1 13 7.3 1.7 2 21 1490 1509 1489 1510 0.93
Sequence Information
- Coding Sequence
- ATGGCACTCAAACTGGGAAAATGCAGACTTTGTTTGAAGCTAGGCGACTTTTATTCCATCTTCACGGTGGACAATGCCTTGCAACTGGCCGAGATGGTTATGGAATGTGCCCGAGTGAAAGTGTATGAGGGAGATGGGCTGCCCGACAAAATCTGCTCTGAGTGTATACAAAAGCTCAGTGGCGCTTATATATTTAAACAGCAGTGCGAAAGATCCGATCAGGAATTACGGCGCAACTATGTACCTCCGCCAGGTTTTGTCACTTCACCACCTCCTAACAGACAAAGCAGCGACTCTGCATTCTCCACTCATACCGACTTGTCGAGTCAGAACAAACCGTCGTCGTCCACTGAAGGCAACGCCACGCCCGCCGCGCGGGGTCGGAAGCGCAGCCACGAGAGCCTCGACAACACGTCGGTGAGCAGCCGCTCGCACGACTACGCGCCCACCACCAAGCGCGTGTCCGAGCTGCGCGCGCCAGACAAGCGGCGCCGCACGCAGCGCGTAAACCACTCCTACGCGGACTCCGACTATGACGACGGCTCGCAGTTCTCGCCGCCGGAAACAGACTCGGATGAGCCGCTCCTCAAAAATGAATACAAGTGCACGGATTGCGACAAAGTCTTTCACAGCCTCAAGAGCCGCGCCATACATATGCGAGTCCATTCGGCCAAAAAGGAGAAGTTGGGCGAAAACGAAGTAGTCAGCATCCCGAAGAATACGACGCGAGACGCGACCGACGACGACGACAAGTTGAATTGTGAAAAATGCGGGAAAACGTTCAAACTGAAAATAATGCTGAAGAGGCATCACGACGTTTGCGGGAAGTCGCCTCAAGTGTCTCCGCGAAAGGAGCTTCTTGTGACCCTGGAGCCGATCGACGCGAAGTCGACGACTAACAAAATAGACTGCGAAATGTGCACAACGAAATTTAAGACTATCGACAATCTCGAAAAGCACATGAGGGTGGTGCACGCCGCCGTTCTCAAGAAGCGCAAGTCGGAGCCGATCGTGCAGAACGGGTACGCGACCGTGCCCTGCCTGTACTGTCGGCAGCCGTTCGAAGATTACTATGAACACAGTTCGCACTTCAACGTGTGCCCGGAGAAGGAGGAAACTTCGATTTTCGAATGTCCTATTTGCAAGAAGGTGACGTACAAGAAGTGCGCTTATTTCATGCACCTGAAGAGCTTGCACTTCGACGCGCGGGCGTACGCCGGCGACCGCAAGGCGACGGCGGAGTCCGTGTCGGAGACGTTCGTGTGCCGCATGTGCAGCGCGCGGCTGGCGTCGCAGGAGCAGCTCATCACGCACCTCGCCGCGCACATGTCCCGCATGGACAACGCCGACGAGCCCGTCGAGCTCGATGACGTCGGCGACACCGGCGCCGACGACGACAGAGCGAGCACGATAGACGATTCAGTGTCTGTCGCCTCGGTGCATAGCAGCTCAAAATATGTTTCGAACGGCCCCCTGCAGTGTAGTATGTGTGAGAAAAGATTCAAATATAAGAAGGCTTTAGAAACTCATGAACTCAAACACTCCGAGTTAGATATTAAAACGGAACCTCCCGACAAGAGTCTGTTGTGCGAAACGAATCGGCCGGACGTGGAGACCGAGTCTAGTCAAGAGGAGGGGGACGACAACACGTGCGACATTTGCGAAAAGCAGTTCTCGTACAAACGCTTGCTTATCCAGCACAAGCGCACCAAACACAACCAGTGCTCCGGCACGAAGCGCGCTAAAATCAACCTGAAAGACTGCTCCGTGCGCTGTCTGATATGCGACGTCGAGATGAAAGTGAGTGCCATTAACGAGCACAACCAGCAACACATATCGGTGAACATCAGGCCGAGGAACGTGTACAGCTGTGCCGAATGCGGGGAGAAGGTCAAAAGCTGCAGCGCGCTGGCCAACCACATCAAGTTCGTGCACCGGCTAAAGCAGGCGCCGACGCCGAAGCGGCCGAAGATGCTGGAGGGCGGGAACGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGACTTCGGAGAGGTTCCGGGCGCCGCCGGCGCGCCGGTCGTGGACCTGATGGGGTTCACGTGCCCAATTTGCCAAAAGAAGATGCCCACTCTCATATCCCTTAAGAGGCATGTCAATTGGCATGCTAACGTGGGGAACAACATAGAGAAAAAGATCGAATGCTTCGTGTGCAAGGAGTCGTTCCGATTCCAATGCCACTACAAAATGCACATGCGCGAGCACTACCACGACACGAACCTTGACCCGAAGCATCTCACGTGCGCCATCTGCAACCGCAAGAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAATCCAAGGACTACCAGTGCTCGATATGCAAGCGCGTGTTCCAGTTCCGCAAGGTGTACCTGTCGCACATGGCGATCCACTTCAAGCGCGGCGAGAGCGTGGCGAACACGATCGTGGGCGACGCGCAGCCCGCCAGCGGCGAGCGTGCGGCCCTGGACGGCGAGCACGCCTGCCACCTGTGCGGCAAACGCTGCGATTCCGACAACTCGCTCAAGTGCCACGTGCGCTGGCACAACTCCAAGTCCTCGCTGTACGGCGCGCGCCACGACTGCTTCATCTGCGGCCTCGTGTTCACCAACAAGAGGCGGCTGGAGCTGCACACGAGGGCGCACTACGAGGACGAAAACGGACCGTTCAAGTGCACCGTTTGCGGCAAGGGCTTCATCGACGAACAGTATTTCCGGAGACACGTGAAGGGACACAATTTCGACCATCAGTCGCACAAGGACAGAATTGAAAAGCTGAGAAAGGATAAAGTCAAATGCCCCATATGCTCCCGCTTCTACCCCGACTTGGTGCGACTGATCCGCCACTTGAGGAGGACTCATCCCGAGAGTAAGATGATCAAAACCGACCCCGACGCCCCCCCGCCCATCTACTACTCGTGTAAGCTGTGCGCCAAAGTATTCATGGACGAGCGGAGGCTTCAGAATCACGAAGAGGCGCATTTGCGAAAGCCTCAGTTCTTTAAGTGTAAATTCTGTGGAAGGAACAGTATGTCGTTAAAGAACCACAATATTCACATTAAATCACATTTGACGAGGAACTACTCTGACAATCCATTGAAATGTACACAATGCGAGGAGACATTTGTTAAAGGATACGATTTGCACCACCACTTGCGCGACGTACATAACACCAAAGAGAGTTGGATAGCGGAGCGGACGGAACTAACCACAGAAGGTCCGCTGAAGGAGCTGCAATGTGGCATCTGTCTGAAAGTCCTAGCCAGCAAAGGCAACTATGAGAGACACATCGACTACCACAACACGCTAAGATGTAACTACTGCTTCGTATACTTCAGCACTTTAAGGTTCCTGGAAGGCCATCTAGCCTTCAGCTGCGATAAAAAGAAATTAATAGGAGATACTGAAATATATCCCAAAAGAATTAAGTGTCACATATGCTACAAGGCTTTCCATTTGCAAGTGAGGTTAGATTGTCATTTGCGAACCAAACACGACATCAAAGTGTTCAAAGAAAGGTCTTCCAACAAGAAAGAAACTGTGTGCGATTACTGCTTCAGAGTATTCGAAAACGAGGACTCTCTGACCACCCATAAGATCTACCACCGTACAATCGGTTATTACGGCTGCATATATTGCAAGAGAAAGTTTAACACCCTGACATTGTATAGGAAGCACAAGAATCATCATTTCGCACAGTTGAACGTCGACAATCCGACCAAGTGCGAACATTGCGACGAAACGTTTGTTGCCTTCAGGGAGATGATCTACCACATGCGAGACGTGCACGGCGACGACAAGGAGTGGATAGTTTTTCCGAAAGACTCCATCGAGGAGACCTGCCCCATTTGCAACAAGAGTTTCTTCAACCTCCACCGACATATGGATTACCACGAGGCGAACAGATGCAAGAAGTGCGCGGAGTACTTCTTCTCGAGATCCGATATGGACAACCACCTTTGTTCCATAGAGAGCGACGACGAGACCCTGCAAGCCAACGGCAACAGCTGCACGCCGGCGTACGAGGAGTGCCGGTTCTGCTTCAAGCCGGTCACGCGGTCCAAGTCGAAGAGGCTGCATGACAACATCCACAAGACCTCTGGGGCGATATCGTGCCGGTTCTGCGATCTCAAATTCAAGACAATGGACGCGTTCAACATCCACGCGTTCTCGCACAGGAGCAGGAAGTACAACAAGCGGCCAATAAAGTGTCGCAAGTGCGGCGAGAAGTTCGTCAAGTACGGCCCGTTCATAAAGCACATGAAGTACGTGCACAAGTCCGCGAAGAAGGTGCACTATCGCGCCGTGGTGCGGCCCGAGCGTTGCGTGGTGTGCGGCGACGAGTTCCCCAACCTGCACAACCACTATCGCGCGCATCTGCTGAATCAGTGCCAGCTGTGCGACAAGTACTTCACTTCCGCCAAGGTGTTCAGCCAGCACCAGTGCGGGCAGCCGGACTCGGACCCGGCTAAGGTGTTCGTGTGCGACGAGAACCTGCCTGCCCTCATCAATGCTTACGTGCCGAAGGACTTAAAGGACGACGAGAAGTACTATGGGCACAGCGGCGACGAGGATGAGGAGGAAGTGGTGGACGCGCCCAAGCCGGCGGCGAGGCTCAAGAACGGCGGCTCAGTGAGTAAGTTAACGCCCGCCAAGCCCGCCAAGCCCGCCGCCGAACTCACCCAGGACGAGAAAAACCTGCATTCCATGGTGTTATCTCCGATTATATCTGACGTGCTATCTCTTTATCAGAAGAAAGAAGATTCTAAAAAAACAGTGGATGATGATGATATTGTGAATTTGGCAGATGATGATTCTATGGATATGGATATAAGCATACCGGTCATAACGATTGACTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMVMECARVKVYEGDGLPDKICSECIQKLSGAYIFKQQCERSDQELRRNYVPPPGFVTSPPPNRQSSDSAFSTHTDLSSQNKPSSSTEGNATPAARGRKRSHESLDNTSVSSRSHDYAPTTKRVSELRAPDKRRRTQRVNHSYADSDYDDGSQFSPPETDSDEPLLKNEYKCTDCDKVFHSLKSRAIHMRVHSAKKEKLGENEVVSIPKNTTRDATDDDDKLNCEKCGKTFKLKIMLKRHHDVCGKSPQVSPRKELLVTLEPIDAKSTTNKIDCEMCTTKFKTIDNLEKHMRVVHAAVLKKRKSEPIVQNGYATVPCLYCRQPFEDYYEHSSHFNVCPEKEETSIFECPICKKVTYKKCAYFMHLKSLHFDARAYAGDRKATAESVSETFVCRMCSARLASQEQLITHLAAHMSRMDNADEPVELDDVGDTGADDDRASTIDDSVSVASVHSSSKYVSNGPLQCSMCEKRFKYKKALETHELKHSELDIKTEPPDKSLLCETNRPDVETESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNQCSGTKRAKINLKDCSVRCLICDVEMKVSAINEHNQQHISVNIRPRNVYSCAECGEKVKSCSALANHIKFVHRLKQAPTPKRPKMLEGGNELADFCEVVVTKAEPLDELQSHNDFGEVPGAAGAPVVDLMGFTCPICQKKMPTLISLKRHVNWHANVGNNIEKKIECFVCKESFRFQCHYKMHMREHYHDTNLDPKHLTCAICNRKSKHLRAAQAHMNFHKQTRFKSKDYQCSICKRVFQFRKVYLSHMAIHFKRGESVANTIVGDAQPASGERAALDGEHACHLCGKRCDSDNSLKCHVRWHNSKSSLYGARHDCFICGLVFTNKRRLELHTRAHYEDENGPFKCTVCGKGFIDEQYFRRHVKGHNFDHQSHKDRIEKLRKDKVKCPICSRFYPDLVRLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAKVFMDERRLQNHEEAHLRKPQFFKCKFCGRNSMSLKNHNIHIKSHLTRNYSDNPLKCTQCEETFVKGYDLHHHLRDVHNTKESWIAERTELTTEGPLKELQCGICLKVLASKGNYERHIDYHNTLRCNYCFVYFSTLRFLEGHLAFSCDKKKLIGDTEIYPKRIKCHICYKAFHLQVRLDCHLRTKHDIKVFKERSSNKKETVCDYCFRVFENEDSLTTHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIVFPKDSIEETCPICNKSFFNLHRHMDYHEANRCKKCAEYFFSRSDMDNHLCSIESDDETLQANGNSCTPAYEECRFCFKPVTRSKSKRLHDNIHKTSGAISCRFCDLKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFIKHMKYVHKSAKKVHYRAVVRPERCVVCGDEFPNLHNHYRAHLLNQCQLCDKYFTSAKVFSQHQCGQPDSDPAKVFVCDENLPALINAYVPKDLKDDEKYYGHSGDEDEEEVVDAPKPAARLKNGGSVSKLTPAKPAKPAAELTQDEKNLHSMVLSPIISDVLSLYQKKEDSKKTVDDDDIVNLADDDSMDMDISIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00448353;
- 90% Identity
- iTF_00682671;
- 80% Identity
- -