Clat004547.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crambus lathoniellus
Gene Symbol
-
Assembly
GCA_949710035.1
Location
OX453297.1:6188562-6207400[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 6.7e-06 0.0011 21.0 0.4 2 23 245 266 244 266 0.97
2 28 0.003 0.51 12.7 0.4 3 19 298 314 298 317 0.96
3 28 8.5e-06 0.0014 20.7 0.4 3 23 357 378 355 378 0.96
4 28 0.62 1e+02 5.4 2.4 1 21 429 449 429 452 0.94
5 28 0.0096 1.6 11.1 0.1 1 23 496 518 496 518 0.99
6 28 0.00058 0.098 14.9 2.2 2 23 568 589 567 589 0.97
7 28 0.00067 0.11 14.7 3.9 2 23 631 653 631 653 0.97
8 28 0.00057 0.096 14.9 0.9 1 23 703 726 703 726 0.95
9 28 0.0033 0.56 12.5 0.2 1 23 785 807 785 807 0.97
10 28 0.012 2 10.8 5.4 2 23 819 840 818 840 0.97
11 28 0.063 11 8.5 1.0 2 23 852 873 851 873 0.96
12 28 0.0081 1.4 11.3 1.1 1 23 883 905 883 905 0.97
13 28 2.9 4.8e+02 3.3 7.5 1 23 934 956 934 956 0.95
14 28 2.6e-05 0.0043 19.2 1.6 1 23 967 989 967 989 0.98
15 28 5.8e-05 0.0098 18.1 0.5 1 23 997 1019 997 1019 0.97
16 28 0.00081 0.14 14.5 0.3 2 23 1039 1061 1038 1061 0.97
17 28 1.2 2.1e+02 4.4 0.3 1 23 1079 1101 1079 1101 0.90
18 28 0.11 19 7.7 3.8 1 23 1108 1130 1108 1130 0.98
19 28 0.0052 0.88 11.9 2.9 2 23 1141 1163 1140 1163 0.95
20 28 0.01 1.7 11.0 0.1 2 23 1186 1207 1185 1207 0.95
21 28 0.41 70 5.9 0.3 2 20 1211 1229 1210 1230 0.92
22 28 0.013 2.2 10.7 0.2 2 23 1288 1309 1287 1309 0.95
23 28 0.017 2.9 10.3 0.8 2 23 1348 1370 1347 1370 0.95
24 28 0.47 79 5.8 3.0 2 23 1387 1405 1387 1405 0.89
25 28 6.4 1.1e+03 2.2 1.5 2 21 1409 1428 1409 1429 0.93
26 28 0.91 1.5e+02 4.9 1.1 2 23 1478 1499 1477 1499 0.92
27 28 0.004 0.68 12.3 1.6 2 23 1510 1532 1509 1532 0.96
28 28 0.14 24 7.4 2.1 2 21 1570 1589 1569 1590 0.94

Sequence Information

Coding Sequence
ATGGAGGCCTATGAGATGGAAAATAACAGAGCCTTAGCTTTTCTTGACGTGCAGATCAGGGTAAAACACGACGGTACTTTATCTCATTCTGTTTACCGGAAACCTACACACACAGACAGATACCTTCATGCCTCATCTAACCATCATCCTCGGCAACTTCAATCCGTGATGACGTCGTTGACCAACAGACCTCATAATTTGTGTGACCCTGAACATCTCCAGTCGGAGCTCGCTCATGTTCAGGAGATCTACGAAGGAGATGGGCTCCCTGACAAAATATGTTCTGAGTGTATTCAAAAGCTGAGTAGTTCTTATATATTTAAACAGCAGTGTGAGAGATCTGATCAAGAGTTACGGCGGAATTATGTTCCACCACCAGGATTTTCGTCCCCACAACCCCCCAATAGACAGAGCAGTGATTCTGCATTTTCTACTCATACTGAGTTATCAAGTCAGACTAAACCGTCATCTTCGACCGAGAACATCGCGACCCCGGCAAAGCGCAGCCGAAAGCGTAGTCGAGACAGTCTTGACAACACTTCAGTCAGTAGTCGCTCTCACGACTATGCACCCACCACCAAGCGAGTGTCCGAGCTTAGGAAATCCCAGAAACGTCGTCGTGCGGACACCAGCAACAACTCTTTTGTCGACTCCGATTACGATGATCACAGCGTGTCACAATTTTCAGCTGGAGAAACTGACTCTGATGAACCCCTGCTTAAAAATGAACTAAAGTGTGATGAATGTGGCAAATTATTTCCGACACAAAAGGGCCTCTCAAATCACATAAGAACTCATTCAGCAAAAAAAGAAAAGCTTAACCAAAATCAAGTAGTCAGTATACCAGCACCTATCACAAAAGATGCTGTGGACGATGATGACAAATTAGGCTGTGAGAAATGTGGCAAGACATTTAAGCTTAAAATAATGCTAAAGAGACATAACGATGTTTGTGGTACTACGCCTCAAGTGACGCCTCAAGTGTCGCCTCAAGTGTCGCCTCAAAAAGAACTGCTTATTTCTCTGGAACCAATAGACGCTAAGCCAGCGTCGACTAACAAAATCGATTGTGAAATGTGctcaacaaaatttaaaactttAGATAATTTGGAAAAGCACATGCGTGTCGTCCATGCTGCTATTCTTAAAAATAGCAAACCGAAAGCTTGGACACAAAACGGGAGTACACCTATTCCATGCATTTATTGTAATAAAGAGTATACCGATTACGATAAACATAACACGCATTTTAACTCTTGTCCACAAAGAGTAGATACGGGTATTTTCGAATGTCCCATTTGCACAAAAGTGATGTATAAAAAGAGTGCTTATTTCTTACATTTAAAATGTATGCATTTCGTTTATCAAAATCCCAAAAAGAAACCACCGACGGAACCGTCACCGTCAACTGCGAAGGAGTCGCATAAGGTTTATCAAAATCCCAATAAAAAACCACCGAAGGAACCGTCGCCTTCGAAGGACTCGTTTCAGTGTCGCATGTGCAACTTGCTGCTGCCGTCGCAGGCGCAGCTCATCGCGCACCTCAACACGCACATGTCCGGCGTCGAAGAGCCCCAGGACGACGCGCCGCCTGACGACGAAGTCGTATACGACGATGATCATTCTAGATCCAGCACGATCGAAGATTCGGCATCCGTCATTTCGGATTACAGCAGCACAAGAGTGTctacgggcccattgaagtgtCGTATGTGCGACAAACAGTTTAAATATAAGAAAGCTCTAGAAACTCACGAACAGAGACACACTGAAACAGATGTGAAAATTGAACCACCCGACAAAGATTCATCTAGTTTGCTATGCGAGACGCGCGGCCCTGAAGCGGACCTGCCCGAGACCGAATCTAGTCAAGAGGAGGGCGACGACAACACTTGCGATATATGCGAGAAGCAATTTTCGTACAAACGTTTGCTAATTCACCACAAACGCACGAAACATAACCAATGTTCTGGCACGAAAAGAGCTAAAATTAATCTCAAGGACTGTTCCGTCCGATGTCTGATATGCGATTTAGAAATGAAAGTGGGCGTGATAAACGAACATAACCAAAAACATATTTCGCGGAACATAAAGCCGAGAAATATATATAGCTGTGCTCTCTGTGAAGAAACTTTCAAGAGCTGTAGCGCCCTTGCGAACCATATAAAGTTCGTTCATCGGTTAAAGCAACCGCCGAAACCGAAGCCCAAGAAAATTCTGCAAGGCGGATCCGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCAGCGGCGAACCGCTCATCAACATGAGCGGGTTTACTTGTCCGATTTGTCAGAAGAAAATGCCGACACTCATTTCTCTCAAACGCCACGTCAACTGGCATTCGAACGTCGGTAACAATATAGAGAAGAAGGTAGAATGTTTCGTCTGCAAGGAGTCGTTCCGATTCCAATGCCACTACAAGCTGCACATGCGGGAGCACTACAAGGACCCGAACCTGGACCCGCAGCACCTGACGTGCTCCGTGTGTGGCCGCCGCAGCAAGCACCTCCGCGCCGCGATGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAAACCAAGGATTACCAGTGCTCCATCTGCAAACGGGTCTTCCAATATCGAAAGGTCTACTTGTCCCACATGGTGATCCACCTGAAGCGCGGCGAGAGCGCCCAGAACACGATCGTGGGCGATATCCTCCCCAACTCGGTGAACAAGACCATTTTCGACGGAACCCACACGTGCCACCTGTGTGGGAAGGTGTGCGATTCCGACAACTCGCTGAAGTGTCACGTCCGGTGGCACAATTCTAAATCTTCTCTTTACGGAGCTCGGCACGAGTGCGACATATGTGGATTAGTATTCACGAACAAGAGACGTCTCGAAATGCACACGAGAACGCATTACGAAGATGATAACGGACCCTTCAAGTGCACGATCTGCGGCAAGGGATACATTGATGAGGAATATTTCCGTAGACACGTGAAAGGACACAATTTCGACCATCAGGTGCATAAAGATAGAATAGACAAATTGAGAAAAGATAAAGTAAAATGCCCCATATGTACTCGATTTTATCCCGATTTGGTGAAACTCATCCGTCATTTGAAAAGGACCCATCCCGAAAGTAAGATGATCAAAACGGATCCGGATGCTCCTCCGCCTATATACTACTCATGCAAACTATGCGCCAAAGTTTTTCTAGACGAGCGTAGACTACAAAGTCATGAGGAAGCACATTTAAGAAAACCTCTCTTCTTTAAATGCAAATTCTGTGGAAAAAATACAATATCATTAAAGAACCACAACATACATATTAAAAGTCacttaacaaaaaattacacTGATAATCCTTTGAAATGTACTAAATGTGATGAAACATTTATAAAGGGATATGATTTGCACCATCATTTGCGTGACGTCCATGACATCAGAGAGAACTGGATAGCGGAGCGGACGGAGCAGACGTTAGAAGGCCCTCTCAAAGAGTTACAGTGTGCTATTTGCTTGAAGGTGCTAGCCAGCAAGGGCAACTACGAGCGACACATCGATTACCACAACATGTTAAGATGCAACTATTGCTTTGAGTACTTTAGCACTCTACGGTTTCTTGAAGGCCACCTGGCATTCAactgtgataaaaagaaattattagGTGATACCGAAATATATCCTAAAAGAATTAAATGCCACATCTGCTACAAAGCTTTTCACTTGCAAGTGAAGTTAGATTGCCATTTGCGGATCAAACATGATATAAAAGTATTTAAAGAAGCATCTTCAGATCAGAAAGAGACTGTATGTGATTACTGCTTTCGAGTATTTGAAAACGAAGAAGCTTTGTCTTCCcataaaatataccatagaacTATTGGTTACTTCGGTTGTATTTATTGCAAGAGAAAGTTTAACACACTCACGGTTTATAGAAAGCATAAGAATCATCACTTTGCACAGTTAAATGTCGACAACCCCACTAAATGCGAACACTGTGACGAGACATTTGTCGCGTTTCGGGAGATGATCTACCACATGAGGGACGTGCACGGAGACGATAAGGAGTGGATCATTATGCCTAAAGATTCTATAGAGGAGACTTGCCCCATTTGTAATAAAAGATTCTTTAATCTTCACCGACATTTAGATTACCATGAAGAGAACAGATgcaaaaaatgtgctgaataCTTTTACTCTAGAAATGATTACGATAATCACCTCTGTGCTATAGAGAGCGACGACGAAGAGTTGCAAGCTAACGGCAACGAATGCATGCCAGCGTACGAAGAATGTCGGTTTTGCTTCAAGCCCATGACCAAGTCTAATTCCAAGAAACTTCACGACAACATCCATAAGACATCTGGGGCGATATCGTGTCGATTCTGtgagctcaaattcaaaacgatGGACGCGTTCAACATTCATTCCTTTTCACATAGAAGTAGAAAGTACAACAAGAGGCCTATAAAATGTCGAAAATGCGGCGAGAAGTTTGTGAAATATGGTCCCTTCATAAAGCACATGAGGCATGTTCACAAGTCGAATAAGAAGGTTCACTACCGGGCGGTGGTGAAGCCGGAGCGCTGCGTGGTGTGCGGCGATGAGTTCCCCAACTTGCACAACCACTACCGCGCGCATCTGCTGAACCAATGCCAGCAGTGCCAGAAATACTTCACCTCCGCGAAGGTGTTGTCTCAGCACCAGTGCGACAAAGAAGACTCGGACCCGTCGAAAGTTTTCGTCTGTGATGAAAATCTTCCAGCTCTGATCAACTCGTACGTGCCGAAGGACTTGAAAGACGATGAAAAATTTTACGGTTACGAAGACGAAGAGGAGGAAGTGGAAGCGGCGCTCCCGGTGCCACGCGACGACGCCAGCCAAACCAGCCAGCCCAGCCAGCCCAGCCAGCCCGAGCCGCCGGAGCTCACCGAGGAAGAAAAACAACTGCATTTTATGGTTTCTTCGCCGATTATATCAGACGTGCTGTCTCTTTACCAGCAGAAGGAAGATGTTGATAAAAAACAGATCGTAGATGAGAAGGATATTGTCAACTTAACTGATGATGATTCCATGGACATAGATTTCAACGTCAGTATACCAGTGATCGAGATTGATTAG
Protein Sequence
MEAYEMENNRALAFLDVQIRVKHDGTLSHSVYRKPTHTDRYLHASSNHHPRQLQSVMTSLTNRPHNLCDPEHLQSELAHVQEIYEGDGLPDKICSECIQKLSSSYIFKQQCERSDQELRRNYVPPPGFSSPQPPNRQSSDSAFSTHTELSSQTKPSSSTENIATPAKRSRKRSRDSLDNTSVSSRSHDYAPTTKRVSELRKSQKRRRADTSNNSFVDSDYDDHSVSQFSAGETDSDEPLLKNELKCDECGKLFPTQKGLSNHIRTHSAKKEKLNQNQVVSIPAPITKDAVDDDDKLGCEKCGKTFKLKIMLKRHNDVCGTTPQVTPQVSPQVSPQKELLISLEPIDAKPASTNKIDCEMCSTKFKTLDNLEKHMRVVHAAILKNSKPKAWTQNGSTPIPCIYCNKEYTDYDKHNTHFNSCPQRVDTGIFECPICTKVMYKKSAYFLHLKCMHFVYQNPKKKPPTEPSPSTAKESHKVYQNPNKKPPKEPSPSKDSFQCRMCNLLLPSQAQLIAHLNTHMSGVEEPQDDAPPDDEVVYDDDHSRSSTIEDSASVISDYSSTRVSTGPLKCRMCDKQFKYKKALETHEQRHTETDVKIEPPDKDSSSLLCETRGPEADLPETESSQEEGDDNTCDICEKQFSYKRLLIHHKRTKHNQCSGTKRAKINLKDCSVRCLICDLEMKVGVINEHNQKHISRNIKPRNIYSCALCEETFKSCSALANHIKFVHRLKQPPKPKPKKILQGGSELADFCEVVVTKAEPLDVLQSHNDFGEVPGSGEPLINMSGFTCPICQKKMPTLISLKRHVNWHSNVGNNIEKKVECFVCKESFRFQCHYKLHMREHYKDPNLDPQHLTCSVCGRRSKHLRAAMAHMNFHKQTRFKTKDYQCSICKRVFQYRKVYLSHMVIHLKRGESAQNTIVGDILPNSVNKTIFDGTHTCHLCGKVCDSDNSLKCHVRWHNSKSSLYGARHECDICGLVFTNKRRLEMHTRTHYEDDNGPFKCTICGKGYIDEEYFRRHVKGHNFDHQVHKDRIDKLRKDKVKCPICTRFYPDLVKLIRHLKRTHPESKMIKTDPDAPPPIYYSCKLCAKVFLDERRLQSHEEAHLRKPLFFKCKFCGKNTISLKNHNIHIKSHLTKNYTDNPLKCTKCDETFIKGYDLHHHLRDVHDIRENWIAERTEQTLEGPLKELQCAICLKVLASKGNYERHIDYHNMLRCNYCFEYFSTLRFLEGHLAFNCDKKKLLGDTEIYPKRIKCHICYKAFHLQVKLDCHLRIKHDIKVFKEASSDQKETVCDYCFRVFENEEALSSHKIYHRTIGYFGCIYCKRKFNTLTVYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIIMPKDSIEETCPICNKRFFNLHRHLDYHEENRCKKCAEYFYSRNDYDNHLCAIESDDEELQANGNECMPAYEECRFCFKPMTKSNSKKLHDNIHKTSGAISCRFCELKFKTMDAFNIHSFSHRSRKYNKRPIKCRKCGEKFVKYGPFIKHMRHVHKSNKKVHYRAVVKPERCVVCGDEFPNLHNHYRAHLLNQCQQCQKYFTSAKVLSQHQCDKEDSDPSKVFVCDENLPALINSYVPKDLKDDEKFYGYEDEEEEVEAALPVPRDDASQTSQPSQPSQPEPPELTEEEKQLHFMVSSPIISDVLSLYQQKEDVDKKQIVDEKDIVNLTDDDSMDIDFNVSIPVIEID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00448353;
90% Identity
-
80% Identity
-