Csup013337.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr5:6306770-6317005[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 5.4e-05 0.0031 17.6 0.7 1 23 203 225 203 225 0.98 2 31 0.00024 0.014 15.6 0.6 2 21 257 276 256 277 0.92 3 31 9.5e-06 0.00055 20.0 0.1 2 23 309 331 308 331 0.96 4 31 5.7 3.3e+02 1.8 0.8 2 15 352 365 351 372 0.79 5 31 0.00061 0.035 14.3 0.9 1 23 382 405 382 405 0.98 6 31 0.00023 0.013 15.6 0.2 1 23 428 450 428 450 0.97 7 31 0.00019 0.011 15.9 2.5 2 23 499 520 498 520 0.97 8 31 0.00024 0.014 15.6 1.9 2 23 562 584 562 584 0.97 9 31 0.00052 0.03 14.5 0.9 1 23 634 657 634 657 0.95 10 31 0.0065 0.38 11.1 0.2 1 23 716 738 716 738 0.96 11 31 0.0075 0.43 10.9 5.5 2 23 750 771 749 771 0.96 12 31 0.0043 0.25 11.6 0.7 2 23 783 804 782 804 0.96 13 31 0.015 0.86 9.9 1.1 1 23 814 836 814 836 0.97 14 31 0.47 27 5.2 7.4 1 23 865 887 865 887 0.96 15 31 8.7e-05 0.005 17.0 3.9 1 23 898 920 898 920 0.97 16 31 5.4e-06 0.00031 20.8 0.5 1 23 928 950 928 950 0.97 17 31 0.00023 0.013 15.6 0.3 2 23 970 992 969 992 0.97 18 31 0.79 46 4.5 0.3 1 23 1010 1032 1010 1032 0.90 19 31 0.071 4.1 7.8 3.8 1 23 1039 1061 1039 1061 0.98 20 31 0.0033 0.19 12.0 2.5 2 23 1072 1094 1071 1094 0.95 21 31 0.0064 0.37 11.1 0.1 2 23 1117 1138 1116 1138 0.95 22 31 1.7 1e+02 3.4 0.2 2 20 1142 1160 1141 1161 0.90 23 31 8.8 5.1e+02 1.2 5.3 2 23 1181 1203 1180 1203 0.90 24 31 0.0013 0.077 13.2 0.3 2 23 1219 1240 1218 1240 0.95 25 31 5.9 3.4e+02 1.8 4.0 5 23 1250 1268 1247 1268 0.94 26 31 0.011 0.63 10.4 0.8 2 23 1279 1301 1278 1301 0.95 27 31 2.9 1.7e+02 2.7 6.2 2 23 1318 1336 1318 1336 0.89 28 31 8.5 4.9e+02 1.2 2.0 2 21 1340 1359 1340 1360 0.93 29 31 0.082 4.8 7.6 0.7 2 23 1409 1430 1408 1430 0.94 30 31 0.0024 0.14 12.4 0.6 2 23 1441 1463 1440 1463 0.96 31 31 0.86 50 4.4 2.3 2 20 1501 1519 1500 1521 0.89
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTGGGAAAATGCAGACTCTGTTTGAAATTAGGGGACTTTTATTCCATCTTCACGGTCGACAATGCCGTGCAACTCGCCGAGATGGTCATGGATTGTGCGAGGGTAAAGATATATGAAGGAGATGGGCTGCCTGATAAAATATGCTCTGAGTGTGTACAAAAGCTCAGTAGTGCTTACATCTTCAAACAACAATGTGAGAGATCAGACCAGGAGCTACGGCGAAATTATGTACCTCCACCTGGATTTTCCTCTACCCCACAACCTCCCAATAGGCAAAGTAGCGACTCTGCATTCTCCACTCACACTGAAGTCTCTAGTCTGACTAAACCATCGTCGTCCACCGAAGGCATCACAACACCGGCAAAACGTAGCCGGAAGCGCAGTCGTGAGAGCCTCGATAACACTTCGGTCAGCAGCAGATCGCATGATTATGCGCCACCGTCCAAGCGTGTCTCAGAACTCCGAAAGTCACAAAAAAGCCGCAATGCTGATACTAGCAATAATTCGTTCATAGATTCCGATTTTGATGATCGCAGCGTCTCCCAATTCTCAGGTGGTGAAACAGATTCGGATGAACCACTTCTTAAGAACCTACACAAGTGCAAAGAATGTGATAAAGCGTTTCCTTCCATTAGAGGTCTCATCAATCATGAGAGAATGCATACAAATGCGAAAAAGGATAAAGTAGACAAAAACCAAGTTGTCGATACCCCGAAACCTGTAACTAAAGATGCTACAGATGACGATGACAAGTTAAGCTGTGAAAAATGCGGAAAGACATTCAAGCTTAAGATAATGCTGAAAAGACATTATGATACATGCAGCGGAAGTACCCCTCAAGTATCACCAAAGAAAGAACTACTCATCTCTTTAGAACCGATTGATGGGAAGAAACAGAATACTCACAAAGTAGAGTGTGAAATATGTACGGCTAAATTTAAAACTGCAGATTATTTAGAGAAGCATATGAGAGTAGTCCACGCCGCCGTTCCCAAAAAAAATATAGGAAAAACTAACACACAGAATGGAAATTCATCAATACCTTGTCTATACTGTCAGAAGGAGTTCGACGATTACGACATGCATTGTGCCCACTTTAACGTTTGTACAGAGAAAGTCGATACTGCTATTTTCGAATGCCCCGTTTGTACGAAAGTGACATACAAAAAGAGCGCGTATTTTTTACATTTAAGAAGTATGCATTTCGCGTTTCTGACCGCCAGCGCCGATAAGAAACCTTCAGTAGATACGAGTTCGTTGAAGGAGTCGTTTGACTGCCGCATGTGCAACAAGAGCCTCCCCTCGCAGGAGCAGCTGATCGCCCACCTCTCCACGCACATGTCGCATGCCGACGACCCCGACCCCGATCCCGATGTCACCATCGTGTGTGACGATGAATCCAGAGCCAGCACTATCGATGATTCAGCGTCCGTCGCTTCCGAAAGCAATTTCAGTAGTTCGCACGTGTCTTTTGGACCTTTAAAGTGTCGCATGTGTGACAAAAGATTTAAATATAAGAAAGCTCTGGAGACTCACGAACAGAGACATGCCGAGGAAGATGTGAAAACTGAACCTCCAGATAAGGATCAATCGAGTCTTTTGTGTGAAGCTTTGTCTGCACCGCGTCCAGATGTAGAATCGGAATCTAGTCAAGAAGAAGGCGACGACAACACTTGTGATATATGCGAGAAGCAATTTTCTTACAGACGTTTACTCATTCAACACAAACGCACCAAACATAACCAATGTTCTGGAACGAAACGCGCTAAGATCAATCTGAAAGACTGTTCCGTACGGTGTCTGATTTGCGATTTGGAAATGAAAGTGAGCGCGATAAACGAGCACAACCAGAAACACATATCTGTTAATATGAAACCGAGGAATCTATACAGCTGCGCACTTTGCGAGGAGACGTTCAAGAGTTGTAGTGCTTTGGCTTCTCATATAAAGTTTGTGCATCGACTGAAGCAACCTCCGAAACCGAAAAAACCGAAAATGCTGGAGGGTGGGTCCGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGACTTTGGCGAGGTTCCGGGCACCGGCGCGCCGCTCGTCAACATGAGCGGCTTCGACTGTCCCATATGTCAGAAGAAAATGCCGACGCTCATATCTCTGAAGAGACACGTCAATTGGCACTCCAACGTCGGCAACAACTTGGAGAAGAAGATCGAATGTTTCGTGTGTAAAGAGTCTTTTCGGTTTCAATGTCACTACAAGCTGCACATGCGCGAGCACTACAAGGATCCGAACCTAGACCCGCAGCACCTCACGTGCCCCATCTGCGGCCGCAAGAGCAAGCACCTCCGCGCCGCGCAGGCTCACATGAACTTCCACAAGCAGACTCGCTTCAAGACCAAGGACTACCAGTGCTCCATTTGCAAACGAATATTCCAGTATCGAAAAGTCTACTTGTCGCATATGGTGATACATCTGAAGCGCGGCGAGAGCGTACAGAACACGATAGTGGGCGATGCGCTGCCCAATTCCGTGGACAAGACAGTTTTCGACGGAACCCACACTTGCCACCTCTGCGGCAAGGTTTGCGACTCTGAGAACTCTCTAAAATGTCACGTAAGGTGGCACAACTCCAAGTCGTCGCTTTACGGCGCTAGACACGATTGTCACATATGCGGATTGGTGTTCACCAACAAAAGAAGGCTGGAGCTCCACACGAGGACTCATTATGAAGACGATAATGGGCCGTTCAAATGCACCATATGCGGCAAAGGCTTTATCGATGAGGATTATTTCCGTAGACACGTCAAAGGACACAATTTCGATCATCAGTCACATAAAAATAGAATTGATAAGTTGAGGAAAGACAAAGTGAAATGCCCGATATGTACTCGGTTTTATCCTGACTTGGTTAAACTTATACGTCACTTGAGAAGAACGCATCCAGAGAGTAAGATGATTAAAACTGACCCAGACGCGCCGCCACCGATCTATTATTCGTGCAAGCTGTGCGCCAAAGTGTTTCTTGATGAACGGCGACTACAAAGTCACGAGGAAGCCCATCTCAGGAAACCTTTGTTCTTTAAGTGCAAATTCTGTGGAAAAAACACAATATCATTGAAAAACCACAATATACATATCAAGTCGCACTTAACGAGAAATTATTTTGATAATCCTCTAAAATGTACTCAATGTGATGAAACTTTTGTTAAAGGATACGATCTGCATCATCATTTGCGTGACGTCCATAGCATCAAAGAAAGCTGGATAGCCGAGCGAACAGAGCAAACACTAGAAGGTCCACTGAAAGAGCTGCAATGTGCAATTTGCTTAAAAGTCTTAGCTAGCAAAGGAAACTATGAGAGACACATAGATTATCACAACACATTGAGATGCAACTACTGCTTTGTTTACTTCAGCACTATGAGATTCCTGGAAGGTCACTTGGCATTCAACTGTGAAAAAAAGCAATTAATCGGAGATACAGAAATATATCCAAAGAAAATTAAATGCCACATTTGTTACAAAGCTTTTCATTTGCAAGTAAAACTAGATTGCCATCTTCGGATCAAACACGATATAAAAGTTTTCAAGGAACAATCTTCTGATAAAAAGGAGACTGTGTGCGATTACTGCTTTAGAGTGTTCGAGAATGAGGACGCACTGACTAATCATAAGATCTATCATCGTACTATTGGCTATTACGGCTGTATATACTGCAAGAGAAAGTTCAACACGCTTACTGTTTATCGGAAACACAAGAATCATCACTTTTCTCAGTTAAATGTTGACAATCCGACTAAATGCGAACATTGCGACGAGACTTTTGTCGCGTTTAGAGAGATGATTTACCACATGAGGGACGTTCACGGTGACGATAAAGAGTGGATCGTTATGCCCAAAGATTCCATAGAGGAGACTTGCCACATATGCAACAAGAGATTCTTCAACCTCCACCGACATTTAGATTATCACCAAGAGAATAGATGTAAAAAGTGTGCTGAATACTTCTTTTCTAGAAACGATTTCGACAATCATTTATGTGCCATAGAAAGTGATGACGAGGACCTGCAGGCCAACGGCAACGATTGCTTGCCAGCTTACGAAGAATGTAGGTTCTGCTTCAAACCAGTGACAAGATCGAACTCGAAGAAATTGCATGACAACATCCACAAGACGTCTGGTGCGATTTCGTGCCGGTTTTGCGATCTCAAATTCAAAACTATGGACGCTTTTAACATTCATGCATTTTCACATAGAAGCAGAAAGTATAATAAGAAGCCGATAAAATGTCGCAAGTGCGGCGAAAAGTTTGTCAAGTATGGTCCGTTCATAAAACACATGAAGTATGTGCACAAGTCGACGAAGAAGGTCCATTACAGGGCCGTAGTGAAGCCAGAGAGGTGCGTGGTGTGCGGAGACGATTTCCCGAATCTGCACAACCACTACCGAGCACATTTGCAGAACCAATGTCAGCAGTGCAACAAGTATTTCACCTCGGCAAAGGTGTTTTCGATGCACAAGTGCGGTGAGGAAGATTCGGATCCGTCGAAAGTGTTCGTGTGCGACGAAAACCTATCAGCTCTGATCAACGCGTATGTGCCAAAGGATTTGAAAGACGACGAAAAGTATTACGGCCGAAGCGATGATGAGGAGGAAGAAGTGGAACCCGAACAACCGCCAGCGGCTCCGAAGAAGCGCGCCAGTAGTAAAGCGGCCCCCTCAGCCAAGACTGTACCGGAGCTCAGCCAAGACGAGAAAGATTTGCATTTAATGGTATCATCCCCGATAATTTCGGACGTGTTGTCGCTTTACCAAAAGAAGGAACTAGATGTAGATACAAAACGAATTGTCGATGATAAGGATATAGTAAACTTAACAGACGATGACTCTATGGATATAGATGTTAGTATACCTGTAATTACAATTGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCARVKIYEGDGLPDKICSECVQKLSSAYIFKQQCERSDQELRRNYVPPPGFSSTPQPPNRQSSDSAFSTHTEVSSLTKPSSSTEGITTPAKRSRKRSRESLDNTSVSSRSHDYAPPSKRVSELRKSQKSRNADTSNNSFIDSDFDDRSVSQFSGGETDSDEPLLKNLHKCKECDKAFPSIRGLINHERMHTNAKKDKVDKNQVVDTPKPVTKDATDDDDKLSCEKCGKTFKLKIMLKRHYDTCSGSTPQVSPKKELLISLEPIDGKKQNTHKVECEICTAKFKTADYLEKHMRVVHAAVPKKNIGKTNTQNGNSSIPCLYCQKEFDDYDMHCAHFNVCTEKVDTAIFECPVCTKVTYKKSAYFLHLRSMHFAFLTASADKKPSVDTSSLKESFDCRMCNKSLPSQEQLIAHLSTHMSHADDPDPDPDVTIVCDDESRASTIDDSASVASESNFSSSHVSFGPLKCRMCDKRFKYKKALETHEQRHAEEDVKTEPPDKDQSSLLCEALSAPRPDVESESSQEEGDDNTCDICEKQFSYRRLLIQHKRTKHNQCSGTKRAKINLKDCSVRCLICDLEMKVSAINEHNQKHISVNMKPRNLYSCALCEETFKSCSALASHIKFVHRLKQPPKPKKPKMLEGGSELADFCEVVVTKAEPLDVLQSHNDFGEVPGTGAPLVNMSGFDCPICQKKMPTLISLKRHVNWHSNVGNNLEKKIECFVCKESFRFQCHYKLHMREHYKDPNLDPQHLTCPICGRKSKHLRAAQAHMNFHKQTRFKTKDYQCSICKRIFQYRKVYLSHMVIHLKRGESVQNTIVGDALPNSVDKTVFDGTHTCHLCGKVCDSENSLKCHVRWHNSKSSLYGARHDCHICGLVFTNKRRLELHTRTHYEDDNGPFKCTICGKGFIDEDYFRRHVKGHNFDHQSHKNRIDKLRKDKVKCPICTRFYPDLVKLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAKVFLDERRLQSHEEAHLRKPLFFKCKFCGKNTISLKNHNIHIKSHLTRNYFDNPLKCTQCDETFVKGYDLHHHLRDVHSIKESWIAERTEQTLEGPLKELQCAICLKVLASKGNYERHIDYHNTLRCNYCFVYFSTMRFLEGHLAFNCEKKQLIGDTEIYPKKIKCHICYKAFHLQVKLDCHLRIKHDIKVFKEQSSDKKETVCDYCFRVFENEDALTNHKIYHRTIGYYGCIYCKRKFNTLTVYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIVMPKDSIEETCHICNKRFFNLHRHLDYHQENRCKKCAEYFFSRNDFDNHLCAIESDDEDLQANGNDCLPAYEECRFCFKPVTRSNSKKLHDNIHKTSGAISCRFCDLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKYVHKSTKKVHYRAVVKPERCVVCGDDFPNLHNHYRAHLQNQCQQCNKYFTSAKVFSMHKCGEEDSDPSKVFVCDENLSALINAYVPKDLKDDEKYYGRSDDEEEEVEPEQPPAAPKKRASSKAAPSAKTVPELSQDEKDLHLMVSSPIISDVLSLYQKKELDVDTKRIVDDKDIVNLTDDDSMDIDVSIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00448353;
- 90% Identity
- -
- 80% Identity
- -