Cpin002391.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750760.1:2720299-2726716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.3e-06 9.7e-05 23.1 0.9 2 23 204 225 203 225 0.97 2 27 0.00049 0.036 15.0 0.3 2 20 254 272 253 274 0.93 3 27 3.4e-06 0.00024 21.8 0.6 3 23 310 331 308 331 0.96 4 27 0.005 0.36 11.9 1.6 1 23 382 405 382 405 0.97 5 27 0.0099 0.71 10.9 0.7 1 23 428 450 428 450 0.98 6 27 0.00016 0.012 16.6 2.2 2 23 503 524 502 524 0.97 7 27 0.00021 0.015 16.2 2.0 2 23 566 588 566 588 0.97 8 27 0.00088 0.064 14.2 0.7 1 23 638 661 638 661 0.95 9 27 0.0029 0.21 12.6 0.2 1 23 720 742 720 742 0.97 10 27 0.01 0.75 10.9 5.5 2 23 754 775 753 775 0.96 11 27 0.019 1.4 10.1 1.3 2 23 787 808 786 808 0.96 12 27 0.0072 0.52 11.4 1.1 1 23 818 840 818 840 0.97 13 27 2.5 1.8e+02 3.4 7.5 1 23 869 891 869 891 0.95 14 27 2.5e-05 0.0018 19.1 3.4 1 23 902 924 902 924 0.98 15 27 6.3e-06 0.00045 21.0 0.6 1 23 932 954 932 954 0.98 16 27 0.0012 0.086 13.8 0.3 2 23 974 996 973 996 0.97 17 27 0.77 56 5.0 0.3 1 23 1014 1036 1014 1036 0.91 18 27 0.083 6 8.0 3.8 1 23 1043 1065 1043 1065 0.98 19 27 0.0026 0.19 12.7 3.2 2 23 1076 1098 1075 1098 0.95 20 27 0.0089 0.64 11.1 0.1 2 23 1121 1142 1120 1142 0.95 21 27 0.011 0.83 10.7 0.2 2 23 1223 1244 1222 1244 0.95 22 27 3.2 2.3e+02 3.0 5.5 5 23 1254 1272 1252 1272 0.94 23 27 0.015 1.1 10.4 0.8 2 23 1283 1305 1282 1305 0.95 24 27 0.52 38 5.5 2.2 2 23 1322 1340 1322 1340 0.89 25 27 0.11 8.2 7.6 0.7 2 23 1413 1434 1412 1434 0.94 26 27 0.0033 0.24 12.4 0.6 2 23 1445 1467 1444 1467 0.96 27 27 1.6 1.2e+02 3.9 2.2 2 21 1505 1524 1504 1525 0.92
Sequence Information
- Coding Sequence
- ATGGCCCTCAAATTGGGAAAATGCAGACTCTGCTTGAAGCTAGGCGACTTTTATTCCATCTTCACTGTCGACAATGCCGTACAACTCGCCGAAATGGTCATGGACTGTGCCCGGGTAAAAATATACGAAGGGGATGGGCTGCCTGACAAAATATGTTCTGAGTGTATTCAAAAGCTCAGCAGTGCTTACATTTTTAAACAGCAGTGTGAAAGATCGGATCAAGAGTTACGGCGCAATTATATTCCTCCTCCTGgtttttcttCTACCCCACAACCCCCCAATAGACAGAGCAGTGATTCTGCATTTTCCACTCATACTGACTTGTCAAGTCAGGCTAAACCGTCATCATCGTCCGAGAGCATCGCAACCCCGGCTAAACGCAGCCGGAAACGAAGTCGAGATAGCATCGACAACACATCAGTCAGCAGTCGCTCGCACGACTACGCGCCGACTACCAAGCGCGTGTCCGAACTCAGGAAGTCGCAAAAACGACGCCGTGCAGACACTAGTAACAACTCTTTCATCGATTCCGACTACGACGATCGCAGCGTGTCGCAGTTTTCAGGCGGTGAAACTGACTCTGATGAACCCctccttaaaaatgatttaaaatgtgATGAATGTGACAAAGTATTTTCGACCAAATTTGGCCTGAACAACCATCGAAGGATTCATTCAAAAGAAaagcataaacaaaatcaatcaGTAAATATTCCAAAAGCTGACACAAAGGATGCTGTGGATGATGATGACAAGTTAAACTGTGAGAAATGTGGAAAAACATTCAAGCTTAAGATAATGCTGAAGAGACATTATGATGTTTGTGGAACCACGCTTCAAGTTTCGCCCCAAATATCTCCTAAAAAACAGTTGCTAATTTCTTTGGAACCAATAGATGCAAAGCcacaattttcaaataaaatcgattgtGAAATGTGCTCGACGAAATTTAAAACTAGAGACAACTTAGAAAAGCACATGCGCGTCGTCCACGCTGCGGTTCTTAAAAATAGCAAACCGAAAGCTTGGACGCAAAACGGGACTTCCCCCATACCTTGCCTTTATTGTCGCGAAGAGTTCACGGattataataaacataacaCACATTTCAACGCTTGTTCAGAGAGAGTCGATACGGGTATTTTCGAATGTCGCATTTGCTCAAAAGTGACGTACAAAAAGAGTGCATATTTCTTACATTTAAGAAGTATGCATTTCGTTTTCCAAAGTCCCAATAAGAAGCCTCCATCGGAGCCGTCGCCGTCGCCCTCGAAGGAGTCGTTTCACTGTCGCATGTGCAACCAGCAGCTGCCGTCGCAGGCGCAGCTGATCGCGCACCTGTCCACGCACATGTCGCACGCCGACGAGCCCGCCGACGACGTCGACGTCGACGTCGCCGCCGACGACGATGCCGTGCCCGATGACGATGACAGAGCTAGCATAATCGAGGATTCCGCTTCGGTCATTTCGGACTACAGCAGCACTAAAGTGTCCACGGGCCCCTTGAAGTGTCAACTGTGTGACAAACGATTTAAATATAAGAAAGCTTTAGAGACTCACGAACAAAAACACGCCGAGACAGATGTGAAAACTGAACCACCAGACGTAAATTCGTCGAGCTTGTTGTGTGAAACGCGGGGCCCCGACGCGGAACCGGCTGAAACTGAATCTAGTCAAGAGGAAGGAGATGACAACACTTGCGATATCTGCGAGAAGCAGTTTTCTTACAAGCGTCTGCTTATTCAACACAAACGCACGAAACATAACCAATGTTCGGGCACGAAACGAGCTAAAATCAATCTTAAGGACTGTTCCGTGCGATGTATGATATGCGATTTAGAAATGAAAGTGAGCGCCGTAAACGAGCACAACCAAATGCATTCATCGAAGAACATCAAGCCGCGAAATTTATATAGCTGTGCTCTATGTGAAGAAACATTTAAAAGTTGTAGCGCCTTAGCCGAACATATAAAGTTTGTTCATCGTCTAAAGCAAGCGCCGAAACCGAAGCCCCGGAAAGTGTTGGAGGGCGGATCCGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCACCGGCGCGCCCCTCGTCAACATGAGCGGGTTCACTTGTCCGATATGTCAGAAGAAAATGCCGACACTCATTTCGCTGAAAAGACACGTCAATTGGCATGCGAACGTCGGTAACAATTTGGAGAAGAAGATAGAATGCTTCGTTTGCAAAGAGTCGTTCCGTTTCCAGTGCCACTACAAGCTGCACATGCGCGAGCACTACAAGGACCCGAATCTGGATCCGCAGCACCTGACGTGCACCATCTGCGGCCGCAAGAGTAAGCACCTCCGCGCCGCGCAGGCGCATATGAACTTCCACAAACAGACGCGCTTCCAGACCAAAGACTACCAGTGTTCCATTTGCAAACGGGTGTTCCAATATCGCAAGGTGTACTTGTCGCACATGGTGATACATCTGAAGCGCGGCGAGAGCGCAGAGAACACGATCGTGGGCTACGGGCTACCCGACTCTGCAGATAGAACCGTGTTCGACGGAACCCACACCTGCCACCTATGCGGGAAGGTGTGCGACTCCGACAACTCGCTGAAGTGCCACGTCCGCTGGCACAATTCCAAGTCCTCGCTTTACGGTGCTAGACACGAGTGCCACATATGCGGATTAGTGTTCACTAACAAGAGACGGCTGGAGATCCACACGAGGACTCATTACGAAGATGAAAACGGCCCCTTCAAATGCACGATCTGTGGCAAGGGCTTTATTGACGAAGAATATTTCCGTAGACACTTGAAAGGACACAATTTCGACAATCAAGTTCATAAAGACAGAATAGATAAATTAAGGAAAGATAAAGTAAAATGTCCTATATGTACACGGTTTTATCCTGACTTGGTGAGACTTATTCGTCATTTGAGAAGAACCCATCCTGAAAGTAAAATGATTAAAACCGATCCAGATGCTCCTCCACCTATGTACTATTCGTGCAAACTATGCGCTAAAGTATTTCTTGACGAACGAAGACTGCAAAATCACGAGGAGGCACATTTAAGGAAACCTCTCTTCTTTAAATGCAAGTTCTGTGGGAAAAATACAATATCTTTAAAGAACCACAATGTACATATTAAATctcatttgacaaaaaattaCTTAGATAATCCATTAAAATGCACACAATGTGACGAAACGTTTACCAAAGGATATGATTTACATCATCATTTGCGCGACGTTCATAATATTAGAGAGAACTGGATAGCGGAGCGGACAGAACAAACATTAGAAGGTCCACTCAAAGAGTTGCAATGTGCTATTTGCTTGAAGGTGTTAGCCAGCAAGGGCAACTACGAGCGCCACATCGATTACCACAACACGTTGCGGTGCAACTACTGCTTCGATTACTTCAGTACTCTCAGGTTCTTGGAGGGCCATTTAGCATTCAATTGTGATAAAAAGAAGTTGATTGGTGATACAGAAATATatcccaaaaaaattaaatgccaCATCTGCTACAAAGCATTTCATTTGCAGGTGAAGTTGGATTGCCATTTACGGATCAAACATGATATAAAAGTGTTTAAAGAAGCATCTTCTGATAGAAAAGAGACTGTTTGCGATTACTGCTTTCGTGTATTTGAAAACGAAGAGGCTTTATCATCTCATAAAATATACCATCGCACTATTGGTTACTTTGGTTGCATATATTGCAAGCGGAAGTTTAACACCCTCACACTTTATAGGAAACATAAGAATCACCACTTTGCGCAGCTAAACGTCGACAATCCAACTAAATGCGAACACTGTGACGAGACTTTCGTCGCATTCAGGGAGATGATATATCACATGAGAGATGTGCACGGAGACGACAAAGAGTGGGTTGTCATGCCTAAGGATTCCATAGAGGAGACTTGCCCCATTTGCAACAAAATATTCTTCAACCTCCACAGACATTTGGATTATCATGAAGAGAACAGATGCAAGAAATGTGCTGAATACTTTTTCTCTAGAAATGATTTCGACAACCACCTATGTGCCATAGAGAGCGACGACGAGGAACTGCAAGCTAACGGCAACGATTGTACGCCGGCCTATGAAGAGTGTCGGTTTTGCTTCAAGCCGGTCACCAGGTCCAATTCCAAGAAACTGCACGACAACATCCATAAGACGTCCGGAGCGATATCGTGTCGATTCTGCGACCTCAAATTTAAAACGATGGACGCGTTCAACATTCATGCATTTTCACATAGAAGTAGAAAGTACAACAAGAGGCCAATAAAGTGTCGAAAGTGCGGCGAGAAGTTCGTGAAATACGGTCCTTTCATAAAGCACATGAAGTACGTGCACAAGTCGACAAAGAAGGTGCACTACCGAGCGATAGTGAAGCCGGAGCGGTGCGTGGTGTGCGGCGACGAGTTCCCCAACCTGCACAACCACTACCGCGCGCATCTGCAGAACCAGTGCCAGCAGTGCCGCAAGTACTTCACCTCCGCGAAGGTGTTCTCTCTGCACCAGTGCGGTAAACAAGACTCGGACCCTTCGAAAGTGTTCGTTTGTGACGAAAATCTTCCAGTTCTGATCGACACTTACGTGCCGAAAGATTTGAAAGACGATGAAAAGTATTACGGTCATAGCGGCGACGAAGACGAGGTGGAACCGGAGTCGTCGGGGCCCTTGCGGCCCGTCGACGACGACAGCCAGGCGAGCCAGCCCGAGCTCAGCCAGGACGAAAAGGATTTGCATTCTATGGTTTCTTCTCCGATAATATCGGACGTGCTGTCTCTCTACCAGCAGAAAGATGAAAATGTTGATAAAAAACAAATCGTCGATGATATTGTCAACTTAACGGATGATGATTCCATGGACATAGATATCAGTATACCTGTTATAACGATTGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCARVKIYEGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYIPPPGFSSTPQPPNRQSSDSAFSTHTDLSSQAKPSSSSESIATPAKRSRKRSRDSIDNTSVSSRSHDYAPTTKRVSELRKSQKRRRADTSNNSFIDSDYDDRSVSQFSGGETDSDEPLLKNDLKCDECDKVFSTKFGLNNHRRIHSKEKHKQNQSVNIPKADTKDAVDDDDKLNCEKCGKTFKLKIMLKRHYDVCGTTLQVSPQISPKKQLLISLEPIDAKPQFSNKIDCEMCSTKFKTRDNLEKHMRVVHAAVLKNSKPKAWTQNGTSPIPCLYCREEFTDYNKHNTHFNACSERVDTGIFECRICSKVTYKKSAYFLHLRSMHFVFQSPNKKPPSEPSPSPSKESFHCRMCNQQLPSQAQLIAHLSTHMSHADEPADDVDVDVAADDDAVPDDDDRASIIEDSASVISDYSSTKVSTGPLKCQLCDKRFKYKKALETHEQKHAETDVKTEPPDVNSSSLLCETRGPDAEPAETESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNQCSGTKRAKINLKDCSVRCMICDLEMKVSAVNEHNQMHSSKNIKPRNLYSCALCEETFKSCSALAEHIKFVHRLKQAPKPKPRKVLEGGSELADFCEVVVTKAEPLDVLQSHNDFGEVPGTGAPLVNMSGFTCPICQKKMPTLISLKRHVNWHANVGNNLEKKIECFVCKESFRFQCHYKLHMREHYKDPNLDPQHLTCTICGRKSKHLRAAQAHMNFHKQTRFQTKDYQCSICKRVFQYRKVYLSHMVIHLKRGESAENTIVGYGLPDSADRTVFDGTHTCHLCGKVCDSDNSLKCHVRWHNSKSSLYGARHECHICGLVFTNKRRLEIHTRTHYEDENGPFKCTICGKGFIDEEYFRRHLKGHNFDNQVHKDRIDKLRKDKVKCPICTRFYPDLVRLIRHLRRTHPESKMIKTDPDAPPPMYYSCKLCAKVFLDERRLQNHEEAHLRKPLFFKCKFCGKNTISLKNHNVHIKSHLTKNYLDNPLKCTQCDETFTKGYDLHHHLRDVHNIRENWIAERTEQTLEGPLKELQCAICLKVLASKGNYERHIDYHNTLRCNYCFDYFSTLRFLEGHLAFNCDKKKLIGDTEIYPKKIKCHICYKAFHLQVKLDCHLRIKHDIKVFKEASSDRKETVCDYCFRVFENEEALSSHKIYHRTIGYFGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVVMPKDSIEETCPICNKIFFNLHRHLDYHEENRCKKCAEYFFSRNDFDNHLCAIESDDEELQANGNDCTPAYEECRFCFKPVTRSNSKKLHDNIHKTSGAISCRFCDLKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFIKHMKYVHKSTKKVHYRAIVKPERCVVCGDEFPNLHNHYRAHLQNQCQQCRKYFTSAKVFSLHQCGKQDSDPSKVFVCDENLPVLIDTYVPKDLKDDEKYYGHSGDEDEVEPESSGPLRPVDDDSQASQPELSQDEKDLHSMVSSPIISDVLSLYQQKDENVDKKQIVDDIVNLTDDDSMDIDISIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00448353;
- 90% Identity
- iTF_00035934;
- 80% Identity
- -