Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467307.1:17961357-17968152[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 1.5e-06 0.00013 23.1 0.9 2 23 170 191 169 191 0.97

2 28 0.00082 0.075 14.5 0.8 2 20 220 238 219 240 0.93

3 28 1.9e-05 0.0017 19.6 0.5 3 23 276 297 274 297 0.96

4 28 0.00092 0.085 14.3 0.9 1 23 348 371 348 371 0.98

5 28 0.0012 0.11 13.9 0.2 1 23 392 414 392 414 0.98

6 28 0.00018 0.016 16.6 2.2 2 23 466 487 465 487 0.97

7 28 0.00064 0.059 14.8 3.9 2 23 528 550 528 550 0.97

8 28 0.00097 0.089 14.3 0.7 1 23 600 623 600 623 0.95

9 28 0.0032 0.29 12.6 0.2 1 23 682 704 682 704 0.97

10 28 0.011 1 10.9 5.5 2 23 716 737 715 737 0.96

11 28 0.023 2.1 9.9 1.2 2 23 749 770 748 770 0.96

12 28 0.0078 0.72 11.4 1.1 1 23 780 802 780 802 0.97

13 28 2.8 2.5e+02 3.4 7.5 1 23 831 853 831 853 0.95

14 28 0.00075 0.069 14.6 3.9 1 23 864 886 864 886 0.98

15 28 1.3e-05 0.0012 20.2 0.5 1 23 894 916 894 916 0.97

16 28 0.0013 0.12 13.9 0.3 2 23 936 958 935 958 0.97

17 28 0.85 78 5.0 0.3 1 23 976 998 976 998 0.91

18 28 0.32 29 6.4 3.6 1 23 1005 1027 1005 1027 0.98

19 28 0.0029 0.27 12.8 3.2 2 23 1038 1060 1037 1060 0.95

20 28 0.0097 0.89 11.1 0.1 2 23 1083 1104 1082 1104 0.95

21 28 0.013 1.1 10.8 0.2 2 23 1185 1206 1184 1206 0.95

22 28 1.6 1.5e+02 4.1 4.5 5 23 1216 1234 1213 1234 0.94

23 28 0.016 1.5 10.4 0.8 2 23 1245 1267 1244 1267 0.95

24 28 0.57 53 5.5 2.2 2 23 1284 1302 1284 1302 0.89

25 28 0.12 11 7.6 0.7 2 23 1375 1396 1374 1396 0.94

26 28 0.0036 0.33 12.5 0.6 2 23 1407 1429 1406 1429 0.96

27 28 3.5 3.2e+02 3.1 0.7 2 23 1445 1463 1445 1463 0.78

28 28 1.4 1.2e+02 4.4 2.9 2 21 1467 1486 1466 1487 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	1.5e-06	0.00013	23.1	0.9	2	23	170	191	169	191	0.97
2	28	0.00082	0.075	14.5	0.8	2	20	220	238	219	240	0.93
3	28	1.9e-05	0.0017	19.6	0.5	3	23	276	297	274	297	0.96
4	28	0.00092	0.085	14.3	0.9	1	23	348	371	348	371	0.98
5	28	0.0012	0.11	13.9	0.2	1	23	392	414	392	414	0.98
6	28	0.00018	0.016	16.6	2.2	2	23	466	487	465	487	0.97
7	28	0.00064	0.059	14.8	3.9	2	23	528	550	528	550	0.97
8	28	0.00097	0.089	14.3	0.7	1	23	600	623	600	623	0.95
9	28	0.0032	0.29	12.6	0.2	1	23	682	704	682	704	0.97
10	28	0.011	1	10.9	5.5	2	23	716	737	715	737	0.96
11	28	0.023	2.1	9.9	1.2	2	23	749	770	748	770	0.96
12	28	0.0078	0.72	11.4	1.1	1	23	780	802	780	802	0.97
13	28	2.8	2.5e+02	3.4	7.5	1	23	831	853	831	853	0.95
14	28	0.00075	0.069	14.6	3.9	1	23	864	886	864	886	0.98
15	28	1.3e-05	0.0012	20.2	0.5	1	23	894	916	894	916	0.97
16	28	0.0013	0.12	13.9	0.3	2	23	936	958	935	958	0.97
17	28	0.85	78	5.0	0.3	1	23	976	998	976	998	0.91
18	28	0.32	29	6.4	3.6	1	23	1005	1027	1005	1027	0.98
19	28	0.0029	0.27	12.8	3.2	2	23	1038	1060	1037	1060	0.95
20	28	0.0097	0.89	11.1	0.1	2	23	1083	1104	1082	1104	0.95
21	28	0.013	1.1	10.8	0.2	2	23	1185	1206	1184	1206	0.95
22	28	1.6	1.5e+02	4.1	4.5	5	23	1216	1234	1213	1234	0.94
23	28	0.016	1.5	10.4	0.8	2	23	1245	1267	1244	1267	0.95
24	28	0.57	53	5.5	2.2	2	23	1284	1302	1284	1302	0.89
25	28	0.12	11	7.6	0.7	2	23	1375	1396	1374	1396	0.94
26	28	0.0036	0.33	12.5	0.6	2	23	1407	1429	1406	1429	0.96
27	28	3.5	3.2e+02	3.1	0.7	2	23	1445	1463	1445	1463	0.78
28	28	1.4	1.2e+02	4.4	2.9	2	21	1467	1486	1466	1487	0.93

Sequence Information

Coding Sequence: ATGCTCTCCTCCCTCTGGATATACGAAGGAGATGGGCTACCTGACAAAATATGTTCTGAGTGTATTCAAAAGCTCAGCAGTGCTTACATTTTTAAACAGCAGTGCGAAAGATCGGATCAAGAGTTACGGCGCAATTATATTCCTCCTCCTGgtttttcttCTACCCCACAACCGCCCAATAGACAGAGCAGTGATTCTGCATTTTCCACTCATACTGACTTGTCAAGTCAGCCTAAACCATCGTCATCGTCCGAGAGCATCGCAACCCCGGCTAAACGCAGCCGAAAGCGAAGTGGAGACAGCATCGACAACACATCAGTCAGCAGTCGGTCGCACGACTACGCGCCGTCCACCAAGCGTGTCTCCGAACTCAGGAAGTCGCAGAAACGTCGCCGTGCAGACACCAGTAACAACTCCTTCATCGATTCCGACTACGACGATCGCAGCGTGTCGCAGTTCTCAGGCGGCGAAACTGACTCTGACGAACCGCTccttaaaaatgatttaaaatgtgacgAATGTGACAAAGTATTTTCGACCAAATTTGGCCTGAACAACCATCGAAGGATTCATTCAAAAGAAAAGCTAAAACAAAATCAATTAGTAAATATTCCAAAAGCTGACACAAAGGATGCTGTGGATGACGATGACAAGTTAAACTGTGAGAAATGTGGAAAAACATTCAAGCTGAAGATAATGCTGAAGAGGCATCACGATGTTTGCGGAACTACGCCTCAAGTTTCGCCCCAAGTATCTCCTAAAAAACAACTGCTAATTTCCTTGGAACCGATAGATGCGAAGCCACAATCTTCAAATAAAATCGATTGTGAAATGTGTTTGACCAAATTTAAAACTAGAGATAACTTAGAAAAGCACATGCGCGTCGTCCACGCTGCGGTTCTTAAAAATAGCAAACCGAAAGCTTGGACGCAAAACGGGACTATCCCTATACCTTGCCTTTATTGTCGCGAAGAATTCACCGATTACAACAAACATAGCACACATTTCAACTCTTGTTCAGAGAGAGTCGACACGGCTATTTTCGAATGTCCCGTTTGCACAAAAGTGACGTACAAAAAGAGTGCATATTTCTTACATTTAAGAAGTATGCATTTCGTTTTCCAAAGTCCCAATAAGAAGCCTTTAACGGAGCCGTCGCCGTCGAAGGAGTCGTTTCCGTGCCGCATGTGCAACCAGCAGCTGTCGACGCAGGCGCAGCTAATCGCGCACCTCTCCACGCACATGTCGCACGACGAGCCCGCCGACGACGCCGACGTCGACGTCACCGCCGCCGACGACGATGTGCCCGATGACGATGACAGAGCCAGCATGATCGACGATTCAGTTTCGGTCATTTCGGACTACAGCAGCACGAGAGTGTCCACGGGCCCCTTGAAGTGTCAACTGTGCGACAAACGATTTAAATACAAGAAAGCTTTAGAGACTCACGAACAAAAACACGCTGAGACAGATGTGAAAACTGAACCACCCGACATAAATTCAAGTTTGTTGTGTGAAACGCGCGGCCCCGACGCGGAACTGGCTGAGACCGAATCTAGTCAAGAGGAAGGAGACGACAACACTTGCGATATCTGCGAGAAGCAGTTTTCTTACAAGCGTCTTCTCATTCACCACAAACGCACGAAACATAACCAATGTTCGGGCACGAAACGAGCTAAAATCAATCTTAAGGACTGTTCCGTGCGATGTCTGATATGCGATTTAGAAATGAAAGTGAGCGCTGTAAACGAGCACAACCAAATGCATTCATCGAAGAACATCAAGCCGAGAAATCTATATAGCTGTGCTCTATGTGAAGAAACATTTAAGAGTTGTAGCGCCTTGGCCGAACATATAAAGTTTGTTCATCGCCTAAAGCAAACGCCGAAATCGAAGCCCCGGAAAGTATTGCAGGGCGGATCCGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCACCGGCGAGCCCCTCGTCAACATGAGCGGGTTCACTTGTCCGATATGTCAGAAGAAAATGCCGACACTCATTTCGCTGAAAAGACACGTCAATTGGCACGCGAACGTCGGCAACAATTTGGAGAAGAAGATAGAATGCTTCGTTTGCAAAGAGTCGTTCCGTTTCCAGTGCCACTACAAGCTGCACATGCGCGAGCACTACACGGACCCGAACCTGGACCCGCAGCACCTGACGTGCTCTATCTGCGGCCGCAAGAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAGACCAAAGACTACCAGTGCTCCATTTGCAAGCGAGTATTCCAATATCGCAAGGTGTACTTGTCGCACATGGTGATACACCTGAAGCGCGGCGAGAGCGCAGAGAACACGATCGTGGGCTACGAGCTGCCCAACACTGCGGACAAAACCGTTTTCGATGGAACCCACACCTGCCACCTGTGCGGGAAGGTGTGCGACTCCGATAACTCACTGAAGTGCCACGTCCGGTGGCACAATTCCAAGTCCTCGCTTTACGGCGCCAGACACGAGTGCCACTTGTGCGGATTAGTGTACACTAACAAGAGACGGCTGGAGCTCCACACAAGGACTCATTACGAAGATGAAAACGGCCCGTTCAAATGCACGATTTGCGGCAAAGGATTTATTGATGAGGAATATTTCCGTAGACACGTGAAAGGACACAATTTCGACCATCAGGTTCATAAAGACAGAATAGATAAATTGAGGAAAGATAAAGTAAAATGTCCCATATGTACACGGTTTTATCCCGACTTGGTGAGACTTATTCGTCATTTGAGAAGAACTCATCCTGAAAGTAAGATGATTAAAACTGATCCGGATGCTCCTCCACCTATATACTATTCGTGCAAACTGTGCGCTAAAGTATTTCTTGACGAACGCAGACTGCAAAACCATGAAGAGGCACATTTAAGGAAACCTCTTTTCTTTAAGTGCAGGTTCTGTGGCAAAAATACAATATCCTTAAAGAACCATAATGTACATATTAAATCTCATTTGACGAAAAATTACTTTGATAATCCATTAAAATGCACACAATGTGATGAAACATTTACCAAAGGATATGATTTGCATCATCATTTGCGCGACGTTCATAACATTAGAGAGAACTGGATAGCGGAGCGGACAGAACAAACATTAGAAGGTCCACTCAAAGAGTTGCAATGTGCTATTTGCTTGAAGGTGCTAGCCAGCAAGGGCAACTACGAGCGCCACATCGATTACCACAACACGTTGCGGTGCAACTATTGCTTCGATTACTTCAGTACTCTCAGGTTCTTGGAGGGCCATTTAGCTTTCAATtgtgataaaaagaaattgATCGGTGATACTGAAATATatcccaaaaaaattaaatgccaCATCTGCTACAAAGCATTTCATTTGCAAGTGAAGTTGGATTGCCATTTACGGATCAAACATGATATAAAAGTGTTTAAAGAAGCATCTTCCGATAGAAAAGAGACCGTATGCGATTACTGTTTTCGAGTGTTTGAAAACGAAGAAGCTTTATCATCTCATAAAATATACCATCGCACAATTGGTTACTACGGTTGCATATATTGCAAGCGGAAGTTTAACACCCTCACACTTTATAGGAAACATAAGAATCACCACTTTGCACAGCTAAATGTCGACAATCCAACTAAATGCGAACACTGCGACGAGACGTTCGTCGCATTCAGGGAGATGATATATCACATGAGAGACGTGCACGGAGACGACAAAGAGTGGGTTGTCATGCCTAAGGATTCCATAGAGGAGACTTGCCCCATTTGCAACAAAATATTCTTCAACCTCCACAGACATTTGGATTATCACGAAGAGAACAGATGCAAGAAATGCGCTGAATACTTTTTCTCTAGAAATGATTTCGATAACCACCTATGTGCCATAGAGAGCGACGACGAGGAGCTGCAAGCCAACGGCAACGATTGTATGCCGGCCTATGAAGAGTGCCGGTTTTGCTTCAAGCCAGTCACCAGGTCCAATTCTAAGAAACTGCACGACAACATCCATAAGACGTCCGGAGCGATATCGTGTCGATTCTGCGACCTCAAATTTAAAACGATGGACGCGTTCAACATACATGCATTTTCACATAGAAGTAGAAAGTACAACAAGAGGCCTATAAAGTGTCGAAAGTGCGGCGAGAAGTTCGTGAAATACGGTCCTTTCATAAAGCACATGAAGTACGTGCACAAGTCGACAAAGAAGGTGCACTACCGCGCGATAGTGAAGCCGGAGCGGTGCGTGGTGTGCGGGGAGGAGTTCCCCAACCTGCACAACCACTACCGCGCGCATCTGCAGAACCAGTGCCAGCAGTGCCGCAAGTACTTCACCTCCGCGAAGGTGTTCTCTCAGCACCAGTGTGACAAAGAAGACTCGGACCCGTCCAAAGTCTTCGTTTGTGACGAAAATCTTCCAATTCTGATCGACACTTACGTGCCGAAGGACTTGAAAGACGATGAGAAGTATTACGGTCACAGCGGCGATGAAGACGAAGTGGAACCGGATGCGTCGGCGCTCGTgcggcccgccgccgccgccggcgacGGCCAGCCGAGCCAGCCCGAGCTGAGCCAGGACGAGAAGGAATTGCATTCTATGGTTTCCTCTCCGATAATATCAGACGTGCTGTCTCTCTACCAGCAGAAGGAGGAACATGTCGATAAGAAACAAATCGTCGCCGTCGACGATATTGTCAACTTAACAGATGACGATTCCATGGACATAGATATGAGCTGCAGCATACCTATTATAACGATTGATTAG
Protein Sequence: MLSSLWIYEGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYIPPPGFSSTPQPPNRQSSDSAFSTHTDLSSQPKPSSSSESIATPAKRSRKRSGDSIDNTSVSSRSHDYAPSTKRVSELRKSQKRRRADTSNNSFIDSDYDDRSVSQFSGGETDSDEPLLKNDLKCDECDKVFSTKFGLNNHRRIHSKEKLKQNQLVNIPKADTKDAVDDDDKLNCEKCGKTFKLKIMLKRHHDVCGTTPQVSPQVSPKKQLLISLEPIDAKPQSSNKIDCEMCLTKFKTRDNLEKHMRVVHAAVLKNSKPKAWTQNGTIPIPCLYCREEFTDYNKHSTHFNSCSERVDTAIFECPVCTKVTYKKSAYFLHLRSMHFVFQSPNKKPLTEPSPSKESFPCRMCNQQLSTQAQLIAHLSTHMSHDEPADDADVDVTAADDDVPDDDDRASMIDDSVSVISDYSSTRVSTGPLKCQLCDKRFKYKKALETHEQKHAETDVKTEPPDINSSLLCETRGPDAELAETESSQEEGDDNTCDICEKQFSYKRLLIHHKRTKHNQCSGTKRAKINLKDCSVRCLICDLEMKVSAVNEHNQMHSSKNIKPRNLYSCALCEETFKSCSALAEHIKFVHRLKQTPKSKPRKVLQGGSELADFCEVVVTKAEPLDVLQSHNDFGEVPGTGEPLVNMSGFTCPICQKKMPTLISLKRHVNWHANVGNNLEKKIECFVCKESFRFQCHYKLHMREHYTDPNLDPQHLTCSICGRKSKHLRAAQAHMNFHKQTRFKTKDYQCSICKRVFQYRKVYLSHMVIHLKRGESAENTIVGYELPNTADKTVFDGTHTCHLCGKVCDSDNSLKCHVRWHNSKSSLYGARHECHLCGLVYTNKRRLELHTRTHYEDENGPFKCTICGKGFIDEEYFRRHVKGHNFDHQVHKDRIDKLRKDKVKCPICTRFYPDLVRLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAKVFLDERRLQNHEEAHLRKPLFFKCRFCGKNTISLKNHNVHIKSHLTKNYFDNPLKCTQCDETFTKGYDLHHHLRDVHNIRENWIAERTEQTLEGPLKELQCAICLKVLASKGNYERHIDYHNTLRCNYCFDYFSTLRFLEGHLAFNCDKKKLIGDTEIYPKKIKCHICYKAFHLQVKLDCHLRIKHDIKVFKEASSDRKETVCDYCFRVFENEEALSSHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVVMPKDSIEETCPICNKIFFNLHRHLDYHEENRCKKCAEYFFSRNDFDNHLCAIESDDEELQANGNDCMPAYEECRFCFKPVTRSNSKKLHDNIHKTSGAISCRFCDLKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFIKHMKYVHKSTKKVHYRAIVKPERCVVCGEEFPNLHNHYRAHLQNQCQQCRKYFTSAKVFSQHQCDKEDSDPSKVFVCDENLPILIDTYVPKDLKDDEKYYGHSGDEDEVEPDASALVRPAAAAGDGQPSQPELSQDEKELHSMVSSPIISDVLSLYQQKEEHVDKKQIVAVDDIVNLTDDDSMDIDMSCSIPIITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00448353;
90% Identity: iTF_00284752;
80% Identity: -