Dabb026371.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_034092305.1
- Location
- JASJET010000103.1:6757491-6769182[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-107 5.9e-102 342.7 24.7 1 300 75 363 75 363 0.92 2 2 0.23 1.4e+04 -3.3 0.4 131 159 372 400 364 406 0.40
Sequence Information
- Coding Sequence
- atgagtgaAAGTGAACCTCAATCATTAAACTGTAGTGCCAACGGCGAATTAAATCAAGAACTAAATAACAATGTGTTGAAAGTGGATGGTGTAACCGAAAGCGAAACTTCGGATTTTGTGGACAGACACAATTTTTTCAACGCAGAACGATCGAGAAGTATCGATAGTCACGGAGATGAAAGCGACGTTATTAATAGTTTCATGCAAACTTCAAGCGATGAAgcaGAAGCACGCCTATGGGCCAAACGTCAAGCCCGTGCCGAGGCACGAGAGATCCGCATGCGCGAACTAGAGCGCATGCAACGCGAGCAAGAGGAAAATGCAGATAGACAATTCGACATGTTGGCGGCCGCTAGCGAACCTGTTTCGGGTCCGAGGGGGCGTGGTTCATCGACGAGGCACCGTCCTGCAAGTCGGAGAAGCTCCGAGGATTCGCTAGAAGACGGCGGAGGGGGTGGAAGTTTAAGGGAATTGAGGCATGAGCTTAAAGAACTGGAAGATAAATTCCGTAAAGCTATGATAGCTAACGCTCAGCTGGACAATGACAAATCGTCGCAAACTTATCAACTAGAACTTCTCAAAGATAGgCTAGAGGAATTAGAAGAAGAACATTCTCAACTAAGAAGAGAACATAGGGACAAATGTAGGGAACATGATCAATTGAAAAGGTTATGTCAGCAATTGAAAGACGACTTAATAGTTCTAAGGCATGAGCTGGAAGATAGAGATAGGCTAATAACGGAAAAGGGTTTGGTGATAGTTTGTGAACCGCCGGGTGAAGACGGAGAATTACCAAAAAAATCTTTGGTTCAGGCGGAGAACGCGAGGCTGCTAGAGGAAGCTGGGGACGGTAGTTTAGatgtaCGATTAGCTAGATTCGCGAAAGAAAAGAGTGAACTGCAGGATCAAATAAGTAGTTTAAAATTAGAGTTAGAAGAAGAAAGAAGTAGGAGAAGAAAGTCCGGATCAAGTAGTCTGCTAAATGGACCTTCATCAGATTATGACCTTGATGACCTACAAAGGGAAGCTAGTAAACAATTAGGAGATTACAAGTTCCGGGCGCAAAAAGCAGAGCAAGACGTGGCAACATTGCAAGCAACTGTAGCCAGGTTGGAAAGTCAAGTGATCAGGTACAAAACCGCATCCGAGGTTTCGGAACAGTCCGAAGAGGCATTGAAAGCAGAAAAGAGAAAGTTGCAGCGggaaGCGTTTTATAACATAGTACTAACTGAAACGTGGCTATATGACTCGGTGAATAACAACGAAATTTTTCCTGATACCTTTAATGTACTTGGATCAGCTAAAAACCACATTTTAAGCGGAAAATCTAGAGGGGGTGGAGTGTGGATTGCTGCTAAAGGCGACCTGACTATGTATAAACTTCATATTGAACTGAAACTCTAA
- Protein Sequence
- MSESEPQSLNCSANGELNQELNNNVLKVDGVTESETSDFVDRHNFFNAERSRSIDSHGDESDVINSFMQTSSDEAEARLWAKRQARAEAREIRMRELERMQREQEENADRQFDMLAAASEPVSGPRGRGSSTRHRPASRRSSEDSLEDGGGGGSLRELRHELKELEDKFRKAMIANAQLDNDKSSQTYQLELLKDRLEELEEEHSQLRREHRDKCREHDQLKRLCQQLKDDLIVLRHELEDRDRLITEKGLVIVCEPPGEDGELPKKSLVQAENARLLEEAGDGSLDVRLARFAKEKSELQDQISSLKLELEEERSRRRKSGSSSLLNGPSSDYDLDDLQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKTASEVSEQSEEALKAEKRKLQREAFYNIVLTETWLYDSVNNNEIFPDTFNVLGSAKNHILSGKSRGGGVWIAAKGDLTMYKLHIELKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376338; iTF_01243672; iTF_00196226; iTF_01240682; iTF_01187851; iTF_01239032; iTF_01307260;
- 90% Identity
- -
- 80% Identity
- -