Rfer011983.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_014462685.1
- Location
- JAACXV010013870.1:14209-20714[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.039 8.8e+02 -0.7 0.1 230 274 2 48 1 56 0.70 2 3 1.1e-107 2.5e-103 345.8 24.3 1 300 59 349 59 349 0.92 3 3 0.13 3e+03 -2.5 8.9 208 275 366 432 350 452 0.73
Sequence Information
- Coding Sequence
- ATGAACGAAGCGGAAGAATTGAACAATAACGTGATGAAGTTACACGGGGTGACCGAAGGGGAGACGTCGGATTTCGCCTATCATCCGAAGTACGAAGACAGGCAATACAGCACGGAGAGTTACGAGGATGAATCAAGCGTAATCAATAGTTTCATGCAGACATCACACGATGAAGCTGAAGCTAGACTATGGGCGAAGAGGCAGGCGCGTGCGGAAGCGCGCGAGATCAGGATGCGGGAGCTGGAACGCATCCAGAAGGAGCAGGAGGAGAACGCGGACAGGCAGTTCGACATGCTGACGGCGGCGGCCGCGGAACCTCCCGTGGGTTCCACCAGGGTACGCGCCACCACCGTGAGGCACAGGCCGGCGAGTCGCCGGAGCTCCGAGGACTCGCTGGAGGACGGTGGGGGAGGCGGGAACTTGCGGGAATTAAGGCACGAGCTCAAGGAGGTCGAAGAGAAATTCCGGAAGGCCATGATAGCGAACGCCCAACTGGACAATGACAAAACTTCACAGACTTACCAGCTGGAACTTCTGAAAGATCGATTAGAGGAATTAGAAGAGGAACATTCGCAGTTAAAGAGAGAGCATAGGGACAAATGTAGGGAGCACGACCAGTTGAAGAGGCTGTGCGCCCAGCTCAAGGACGACGTGTGCGCTCTAAAGTTCGAGGTGGAGGAAAGAGACAGGCTGATCGCGGAAAAAGGGTTGGTTATAGTGGTGGGGGAGCCGGATGAGGAAGGCGAACCCCCGAAGAAAGCTCTGGTCCAGGCCGATAACGCCAAGTTGTTGGAGGGAGCGGGCGATGGCAGTCTAGACGTACGATTAGCTAAATTCGCAAAGGAAAAGACTGACCTGCAAGACCAGATCAGCAGTTTGAAGCTGGAACTGGAAGAAGAACGAAGCAGGCGACGAAAATCGGGCTCCAGCGGCTTGATGAACGGCCCTTCGACAGATTACGACCTTGACGACCAACAGAGAGAAGCCAACAAACAACTGGCAGACTTCAAATTCAGGGCACAGAAGGCGGAACAAGACGTCGCAACACTTCAGGCAACCGTCGCCAGGTTGGAGAGTCAAGTCATCAGGTATAAAACGGCGGCCGAGGTCTCCGAACAGTCGGAGGAAGCCCTGAAAGCCGAGAAGAGGAAGCTGCAAAGAGAGGTGAACAACATGTctcaaaaaataatgttgttgGAGGCTTCGACGTCCGCCTTGAGACAACAGCAGAAGCGACTGTACCAAAGAACGATCACCGGCTCCCTTGCCAGGGAAGCTCAAAGCCGAGCCGAGGAACTAGAGACCTCCAACACTCATCTCCTGAAGCGCCTGGACAAACTTAAAAACGCCAAATCGGCCTTGCTGAAGGAACTTTGA
- Protein Sequence
- MNEAEELNNNVMKLHGVTEGETSDFAYHPKYEDRQYSTESYEDESSVINSFMQTSHDEAEARLWAKRQARAEAREIRMRELERIQKEQEENADRQFDMLTAAAAEPPVGSTRVRATTVRHRPASRRSSEDSLEDGGGGGNLRELRHELKEVEEKFRKAMIANAQLDNDKTSQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLCAQLKDDVCALKFEVEERDRLIAEKGLVIVVGEPDEEGEPPKKALVQADNAKLLEGAGDGSLDVRLAKFAKEKTDLQDQISSLKLELEEERSRRRKSGSSGLMNGPSTDYDLDDQQREANKQLADFKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREVNNMSQKIMLLEASTSALRQQQKRLYQRTITGSLAREAQSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444132;
- 90% Identity
- -
- 80% Identity
- -