Csor024250.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000716.1:5360-26594[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-107 2.8e-102 343.6 26.5 1 300 59 348 59 348 0.92 2 2 0.029 1.5e+03 -0.3 4.1 193 233 378 417 349 423 0.49
Sequence Information
- Coding Sequence
- ATGGACAGTGTCGAACAAGAACCAAACAATAACGTGCTGAAGTTGGACGGTGTGACCAGCGATGAAACGTCAGACTTTGTGAACGTACGTGAGCTGGACAAGATATCAAACTCCGACAGTTATGGTGACGAGAACGAtgttattaatagttttatgCACACCTCCTGCGATGAAgCTGAAGCTAGGTTATGGGCCAAAAGACAGGCACGCGCGGAAGCGCGCGAGATAAGGATGCGAGAACTGGAGCGCATCCAGAAGGAGCAAGAGGAGAATGCGGACAGGCAGTTCGATATGCTCGCCGCGGCAGCTGCGGAACCACCTGTGGGTTCCAGAGGACGTTCTTCCACTGGAAGGCATCGGCCGGCGAGTCGAAGAAGTTCAGAGGACTCGCTGGAAGATGGCGGGGGAGGTGGAAGCTTGCGAGAACTAAGGCATGAACTGAAGGAAGTCGAAGAGAAATTCCGAAAAGCCATGATAGCCAATGCCCAGTTGGACAACGATAAAACCTCACAAACGTATCAGCTGGAACTTTTAAAGGATAGGTTAGAGGAATTGGAAGAGGAACACTCTCAATTAAAGAGAGAGCACAGGGACAAATGTAGGGAACATGACCAACTGAAGAGGCTGTGCGCCCAGCTTAAAGATGACGTGTCCGCTTTTAAGTACGAGGTGGATGAAAGAGACAGGCTGATAGCAGAGAAGGGATTAGTTATAGTGGTGGGGGAGCCAGACGAAGAAGGTGAACTTCCGAAGAAAGCTCTTGTCCAAGCTGACAACGCCAAGTTGTTGGAGGAAGCTGGAGACGGCAGTCTAGATGTACGATTAGCCAAGTTTGCGAAAGAGAAAAGCGACATGCAAGACCAGATCAGTAgtttaaaattagaattagaagAAGAGCGCAGTAGGCGAAGGAAATCAGGATCCAGCGGTTTGTTGAACGGTCCTTCCTCCGACTACGACCTTGACGACCAGCAAAGAGAGGCTAGTAAACAACTGGCAGACTACAAGTTCAGGGCGCAGAAAGCAGAACAAGACGTGGCAACGTTGCAAGCCACCGTTGCCAGATTGGAAAGTCAGGTGATCAGGTACAAGACGGCCGCTGAGGTTTCGGAACAGTCGGAGGAAGCGTTGAAAGCTGAGAAGAGGAAGCTGCAACGAGAGgctAGAGAAGCCCAAAACAGAGCTGAAGAATTAGAAACGTCCAACACTCATCTGTTGAAACGTCTGGACAAACTGAAAAATGCCAAATCCGCCCTGCTGAAGGAACTTTGA
- Protein Sequence
- MDSVEQEPNNNVLKLDGVTSDETSDFVNVRELDKISNSDSYGDENDVINSFMHTSCDEAEARLWAKRQARAEAREIRMRELERIQKEQEENADRQFDMLAAAAAEPPVGSRGRSSTGRHRPASRRSSEDSLEDGGGGGSLRELRHELKEVEEKFRKAMIANAQLDNDKTSQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLCAQLKDDVSAFKYEVDERDRLIAEKGLVIVVGEPDEEGELPKKALVQADNAKLLEEAGDGSLDVRLAKFAKEKSDMQDQISSLKLELEEERSRRRKSGSSGLLNGPSSDYDLDDQQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREAREAQNRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444132;
- 90% Identity
- -
- 80% Identity
- -