Cimp003399.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010000031.1:608646-631277[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-10 4.4e-08 34.9 0.0 1 39 309 348 309 352 0.90 2 4 9.1e-11 1.1e-08 36.9 0.1 1 39 363 401 363 404 0.95 3 4 1.7e-17 1.9e-15 58.4 0.0 1 45 418 463 418 463 0.98 4 4 5e-15 5.9e-13 50.5 0.0 1 39 470 509 470 512 0.94
Sequence Information
- Coding Sequence
- ATGTTGGCCTCAAATTTCAGGCAGTATATTATGAAAATCGTACTCTTTGTGGAAAACACATCCAAAAAAACATCTCCACTAGAGCCGTGCCTTCTCATTGCGTTTTGCGGATTTGCCCGGCTGTCGCTTCTGAAAACAGCAGACCAACTAAAAATAAAGGGATTGTGCGAATCTACTGCCGAAAACTCAGACAATCCGAGCATCCTGCAATTCCACTCAAGTGGCATCACGAGGATACGTAGAGCTTCGCCTCAAAAACACGACCAGCCTTTGGACGATCACAGGTTATTCAAATTGAGGAAATTGAATTCGCCGAAAGTAGAGAAGAGCGAACGTGAAAGTGGCTCTTCTGACGAAAGGGAGAATGATGATATGCCAGTGAATTTAGATGATCACACAAACAAGAGGGTTGAACCCGAACAAACTAAACCGTTAAATATGAGTAGCCAAGGGCTGCTTGCCGGCCAAACAATATTTTCCCAATTTGGAGTCGACACCGATGATTTCCCTCCAGAACCTCCTGCGCCTTCGGCAATTCCTGTCGGCCATGTGGACATGGACCATTCGCCTACCAGGACATTGCTCAATAGTAGTTCCATCCATAGAACCGATATTTCcgataataaatatgaaataaagaAAGAAGCATtagatatcaaatttgaaactTTACGATCATATGATCAAGATTCGCTTCTGGAGATGGATTCGCATAACTCCCGTTTGTCAGGTGCTGATCATTCGAGAGATAGTCACGACGATCAGGATCAGTCTATACACTCCATGTTGGTCACACCAGAACTCATGGGCATGATGCCTGGAGTTTCAAATAGATTAGATGAATTGAATGGCGGCAACGACCTTTCCATGGGTAAAAATGGTTGTGATCCATCTAGAAATCACTTAGGCGGGCCAAAAACTTGGACTCAGGAAGACATGGATATGGCCTTAGACGCATTGAGAAATCACAATATGAGTCTCACAAAGGCATCAGCCACTTATGGTATTCCCTCCACTACATTATGGCAAAGAGCTCATAGATTAGGAATAGATACGCCAAAGAAAGAAGGGCCTACCAAATCCTGGACAGAAGAAAATCTCAATAGCGCTTTGGATGCTTTGAGAACAGGAACAATATCTGCTAATAAAGCTAGCAAAGCATTTGGTATTCCAAGTAGTACATTGTATAAAATAGCAAGACGAGAAGGTATTAGATTGGCTGCTCCTTTCAATGCTGCACCAACAACATGGACACCAGAGGATTTAGAAAAAGCTCTCGAGTCTATAAGGTCTGGTCAGACATCTGTTCAAAAGGCTTCCACAGAATTTGGTATTCCAACCGGCACACTTTACGGTAGATGCAAACGTGAAGGCATAGAACTGTCTAGGTCGAATCCGACGCCTTGGTCAGAAGATGCGATGGGTGAAGCATTAGAAGCTGTTAgGCTCGGACATATGTCAATAAATCAAGCAGCTATTCACTACAATCTTCCTTATTCTTCGCTCTATGGAAGGTTCAAAAGAGGTATCAAATACGATGCGGATAATTTGGACGTTAATTCAGATAGCAATTCGCATTTGGATGTTGCATTTGGCATGGATTATAACAGTTCTCATCCTCAACAGATTCAATATCAAAATCACACAAACAGCTGA
- Protein Sequence
- MLASNFRQYIMKIVLFVENTSKKTSPLEPCLLIAFCGFARLSLLKTADQLKIKGLCESTAENSDNPSILQFHSSGITRIRRASPQKHDQPLDDHRLFKLRKLNSPKVEKSERESGSSDERENDDMPVNLDDHTNKRVEPEQTKPLNMSSQGLLAGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMDHSPTRTLLNSSSIHRTDISDNKYEIKKEALDIKFETLRSYDQDSLLEMDSHNSRLSGADHSRDSHDDQDQSIHSMLVTPELMGMMPGVSNRLDELNGGNDLSMGKNGCDPSRNHLGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDADNLDVNSDSNSHLDVAFGMDYNSSHPQQIQYQNHTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00965294; iTF_01023756; iTF_00965043; iTF_00130418; iTF_00349400; iTF_00348746; iTF_00020122; iTF_00394194; iTF_00764599; iTF_00764871;
- 90% Identity
- -
- 80% Identity
- -