Aobl006570.2
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014428.1:45118979-45121670[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 1.3e-08 34.9 0.0 1 39 312 351 312 355 0.90 2 4 3e-12 2.5e-09 37.2 0.0 1 39 366 404 366 407 0.95 3 4 7e-19 5.9e-16 58.4 0.0 1 45 421 466 421 466 0.98 4 4 1.8e-16 1.5e-13 50.7 0.0 1 40 473 513 473 517 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGAGCGAACAATTATTACTATTCCGACTTTTTTCCATCGCACGCCACTGCTCGGACCCAGAGGAGCTTGGAAGTTGGCGAAAGCACTCTCGAGATGCAAAGACACAGTGAGAGAAGTTGTACGTCCTTGAACCCGtctCTCCTCAAAACCGCCGATCAGCTCCGCATCAAGGGCCTCTGCGAGTCCAGCAACAAGGAGGACAACCCCGAATTCGAGCACTTCCACTCGTCCAACGTGACCAGGATAAGGAAGTCGTCCCATCTGAGGCACCAGGTCGCTCCTGATGAAGGCCGACAGGAGAAGGTGAGGAGGTTGGCCACGCCTAAACTGGAACAGTGCGAGGTCGAAGAGGCTGCGTCGAACCACGGCGGAGACGATGAGATGCCATCAGTGAACTCAGATGCTGCGATACATTACAGGGTCGATCCTGAACGAGCATTGAATATGAGTAGCCAGGGGCTGCTGGCTGGCCAGACGCTGTTCTCCCATTTCGGGGTGGACACAGATGACTTCCCCCCGGAGCCGCAGGCGCCGTCCGCGATACCAGTGGGTCACGTGGACATGGACCATTCTCCCACCAGGACCTTGCTCAACAGCAGTTCCATCCACAGGACGGACATCTCCGATTCCAAGTACGAGATCAAGAAGGAGGCGATAGACATCAAATTCGAGACGTTGCGGTCGTACGACCAAGACTCCCTGCTGGAGATGGATTCGCACAACTCCAGGATGTCCGGCGCCGACCTCTCCAGGGACAGCCACGAGGACCAGGACCAGTCCATGCACTCCATGCTGGTGACGCCCGAGCTCATGGGGATGGTGCCCGGGGTGTCCAGTCGTTcagaagatataatgaatggtgaTATGATGATGGGGAAGGGTTCATCAGACCCCTCGAGGAACCACACAGGTGGTCCTAAGACCTGGACACAAGAAGATATGGATATGGCATTGGATGCTCTCAGGAATCATAATATGAGTCTGACGAAGGCTTCTGCAACTTACGGTATTCCCTCCACTACATTATGGCAGAGAGCGCATAGGTTAGGAATAGACACTCCGAAGAAAGAAGGTCCCACGAAATCCTGGACTGAAGAGAACCTGAACAACGCCTTAGATGCTCTTAGAACTGGAACAATATCCGCCAATAAAGCAAGCAAAGCTTTTGGTATCCCAAGCAGCACGTTATACAAGATAGCCAGAAGAGAAGGCATCAGGTTAGCAGCGCCTTTCAACGCAGCCCCAACCACCTGGACACCGGAGGATCTTGAGAAGGCCCTTGAATCTATAAGATCTGGTCAAACGTCGGTGCAGAAAGCGTCAACGGAGTTCGGAATTCCAACGGGGACACTTTACGGAAGATGTAAAAGGGAAGGCATCGAACTGTCCAGGTCCAATCCAACTCCTTGGTCGGAAGATGCTATGGGAGAAGCCTTAGAGGCAGTAAGGCTTGGCCACATGTCCATCAACCAAGCAGCCATCCATTACAATCTGCCGTACTCCTCCCTCTATGGGAGGTTCAAAAGAGGTATAAAGTACGAATCAGAAAATTTGGAAGGAAATTCCGACAGTAATTCGCACCTAGAAGTTGCTTTCGGCATGGACTACGCCAATCCTCATCCACAACAGATCCAATATCAGAACCAAACGagctga
- Protein Sequence
- MPRANNYYYSDFFPSHATARTQRSLEVGESTLEMQRHSERSCTSLNPSLLKTADQLRIKGLCESSNKEDNPEFEHFHSSNVTRIRKSSHLRHQVAPDEGRQEKVRRLATPKLEQCEVEEAASNHGGDDEMPSVNSDAAIHYRVDPERALNMSSQGLLAGQTLFSHFGVDTDDFPPEPQAPSAIPVGHVDMDHSPTRTLLNSSSIHRTDISDSKYEIKKEAIDIKFETLRSYDQDSLLEMDSHNSRMSGADLSRDSHEDQDQSMHSMLVTPELMGMVPGVSSRSEDIMNGDMMMGKGSSDPSRNHTGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESENLEGNSDSNSHLEVAFGMDYANPHPQQIQYQNQTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415795;
- 90% Identity
- iTF_00349400;
- 80% Identity
- -