Csep009052.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- lolal
- Assembly
- GCA_907165205.1
- Location
- OU015573.1:61484824-61541188[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-11 2.1e-08 34.9 0.0 1 39 297 336 297 340 0.90 2 4 4.8e-12 4e-09 37.3 0.0 1 39 351 389 351 392 0.95 3 4 1.1e-18 9.4e-16 58.5 0.0 1 45 406 451 406 451 0.98 4 4 3.3e-16 2.7e-13 50.6 0.0 1 39 458 497 458 501 0.94
Sequence Information
- Coding Sequence
- ATGCCCCAGGACATCCGGTTTTCGGATCTGAAGTTCATTATAGAGTTCGTCTATAAGGGGGAGATAGACGTTTCACAAACTGAACTGCAGTCTCTCCTCAAAACCGCCGATCAGCTGCGCATAAAAGGCCTCTGCGAGTCGACCAACGAGAGGGAAAATCCCAACTTCGAGCATTTCCACTCGTCCAACGTGACCAGGATCAGGAAATCGGCGCATCTGGTCAACGAAGACCCTCTGGATGACTGCATCAGGAAGGAGAAAGTGAGAAAATTGGCCACCCCCAAATTGGAACGTTGCGAACTAGAAGAGGACGTTTCGAACGATGGTGGAAAGGAGGAAATGCCTGTGAATTCAGATGGTAGGATACGAGATCCTGACCAACAACGAAGAACTGCATTGAATATGAGTAGCCAGGGGCTGCTTGCTGGCCAAACGCTATTCTCCCACTTCGGGGTAGATACAGATGACTTCCCTCCAGAACCCCCGGCCCCCTCGGCCATACCTGTCGGTCACGTGGACATGGACCATTCGCCCACGAGAACCCTGCTGAACAGCAGTTCCATCCATAGGACGGACATTTCCGATTCCAAATACGAGATCAAGAAGGAGGCGATAGACATCAAGTTCGAGACCTTGCGATCCTACGATCAAGACTCGTTGCTCGAGATTGACTCGCACAATTCCCGGATGTCCGGCGCCGACCTGTCCAGAGACAGCCACGAGGATCAGGACCAGTCCATGCATTCCATGCTGGTGACGCCCGAGCTCATGGGTATGGTACCGGGAGTTTCTAGTCGGTCAGAGGACATCATGAATGGCAGCGGTGATATGCTGATGGGCAAAAATTCATCAGATACATCGAGAAACCCAGGTGGTCCTAAGACGTGGACGCAGGAAGATATGGATATGGCCTTAGACGCTTTGCGAAACCACAATATGAGTCTAACAAAGGCATCTGCAACCTACGGTATTCCCTCCACTACTTTATGGCAGAGAGCCCATAGATTAGGAATAGACACTCCAAAGAAAGAAGGTCCAACGAAGTCCTGGACCGAAGAAAACCTCAATAACGCCTTAGACGCTCTGAGAACAGGAACGATATCGGCAAATAAAGCTAGCAAAGCTTTCGGTATCCCGAGTAGTACCCTATACAAAATAGCCAGAAGGGAGGGAATCAGATTGGCAGCACCTTTCAACGCAGCGCCGACAACTTGGACACCAGAAGATCTCGAGAAGGCTCTGGAATCCATAAGGTCTGGTCAGACTTCCGTACAGAAAGCATCGACGGAGTTTGGAATTCCAACTGGGACCCTCTACGGGAGGTGCAAAAGGGAGGGTATAGAGCTGTCTAGGTCTAATCCAACGCCATGGTCTGAAGATGCAATGGGAGAGGCCCTAGAAGCTGTCAGGCTTGGCCACATGTCCATCAACCAAGCGGCCATCCATTACAACCTACCCTATTCGTCCCTGTATGGTAGGTTCAAAAGGGGTATAAAGTATGACTCTGAGAACTTAGAAGGAAATTCTGACAGCAATTCACACTTAGAGGTCGCTTTCGGCATGGAATACACCAATCCTCATCCACAACAGATCCAATACCAGAATCAAACCAGCTGA
- Protein Sequence
- MPQDIRFSDLKFIIEFVYKGEIDVSQTELQSLLKTADQLRIKGLCESTNERENPNFEHFHSSNVTRIRKSAHLVNEDPLDDCIRKEKVRKLATPKLERCELEEDVSNDGGKEEMPVNSDGRIRDPDQQRRTALNMSSQGLLAGQTLFSHFGVDTDDFPPEPPAPSAIPVGHVDMDHSPTRTLLNSSSIHRTDISDSKYEIKKEAIDIKFETLRSYDQDSLLEIDSHNSRMSGADLSRDSHEDQDQSMHSMLVTPELMGMVPGVSSRSEDIMNGSGDMLMGKNSSDTSRNPGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSENLEGNSDSNSHLEVAFGMEYTNPHPQQIQYQNQTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415795;
- 90% Identity
- iTF_00349400;
- 80% Identity
- iTF_00349400;