Clev010603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crematogaster levior
Gene Symbol
-
Assembly
GCA_901521435.1
Location
CABEGB010000946.1:123998-128561[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.3 9.9e+02 1.4 0.6 1 18 349 366 349 374 0.67
2 11 1.1e-06 0.0002 22.5 1.8 2 23 440 461 439 461 0.97
3 11 5.2e-06 0.00098 20.3 0.5 1 23 467 489 467 489 0.98
4 11 0.00032 0.061 14.7 2.4 1 23 495 517 495 517 0.98
5 11 0.00033 0.062 14.6 1.9 1 23 523 545 523 545 0.97
6 11 0.00023 0.043 15.2 1.3 1 23 551 573 551 573 0.98
7 11 3.3e-07 6.2e-05 24.1 0.4 1 23 581 603 581 603 0.98
8 11 0.0042 0.79 11.2 0.2 1 23 609 631 609 631 0.94
9 11 1.3e-05 0.0024 19.1 2.2 1 23 637 659 637 659 0.98
10 11 6.6e-06 0.0013 20.0 0.6 1 23 665 687 665 687 0.98
11 11 3.3e-06 0.00063 20.9 1.9 1 23 693 715 693 716 0.96

Sequence Information

Coding Sequence
ATGGCCGTCGTCGAGGAGTTCGATTACCTGTGCCGTCTGTGCGCGGCCAAGACTGGCATCCTGATGGGCCTGCCGATATTCGAGACCGGCGATCAAATGCGCAACATCGACAAGAAGATAGCGGCCTGTCTGCCGGTTCAGGTGTCGTTGACGGATCAGCTGCCCAAGGTGGTCTGCGAGGAATGCGCATTCAAACTGGATCAGTTGTTTGATTTTCGCGAGAAGTGTCTACACACGGAAGGGATGTTTATGGAAATGTTGAAGGAGATCGGTAAAGAGGAAGTCGTGCATATATCGGAGCATGATTTGGCGAGCGTGAATAACATGGGCACAATTCAGAGAAATCTGAATAGCATACAGATTAATAACGAAAATGTACAAAGCCATTCGGCCGTGGCTCACGAGGCTGCAGAATCCACCATACACACGATGCAAGTAATGGACGAAATGGACCTGGCTGGTGGCGAACAAGTGGTCACTCAGGAAGAAATGGGGCAGCAGGATGCGGATATACAGGATATTGACTGTTTAGATGGTGACACCGTGAGAATGGTCGACGAACATATACGAGAAGTTTCAAACCATCAGATCGCAATGCACTTGGATAGCGATATCACTGTAGTGAGTAACCTGGGTGGCCACTTGAGTCAATTAGGGATAAACTACGTTACTTCTATTAATCCTGAAGATCAGAGCCAAGAGCAAATAGTACATTACTGTGAAAGTGTAAAATACGAAGCAGATTCAATAAAACCAGAGTATCACAGATTAACTACGGAAGAACCACAGCATGTACTGAAAAATGATGTAACAGTAGATAATTTTGTGTCCTCTCAAGCTGAAACAGAAAGTGAAATAGATGAGTCTTGCATGAACGAAAATGGAACTCACGAACACGTAGACTCCGTGAATGCTTTACCATCTACAAGTCAGATAAACGGCGTATCTTGCGAAATAATGGTTAAATATACGAAGAGAACGAAGAATGCGTTATTGGAGTCTACGCTCAGCAACCCTACTATAGATGAAACCGGTTCGCACTGGTACGTGTGCCCGTTTTGCAACGAAGCAGCTTTGGAGACTACCAATTTGGCCGCACATTTCGAGCAGCATTTCTGTTACTGTTCTTgcagtttatattttactagTGTCGAGGTATTAAATTTACACAAGGAacaatgtaatgtatataaaactgaAGTAGTCGATAAGGAGAAGAAGGACGCACAGTTAAATGTAATATCGTCCCAAGAGAGCAATGACAATCAAGACGAGCAGAAGAAACAGTCGACGGTGAGACGGAAGTGGACTGCAAAAGTGTGTACGGAATGTGGCAAGCAGTACAAGTCGAATTACAAATTGCAGGAGCATATGCGCAAGCACACGGGCGAGAAGCCGTTTCAATGTACGACGTGCGACAAGGCGTTTCGCAGCAAGATCGGTCTCGCACAGCACACGGCCACGCACACGGGCCAGTTCGACTATAACTGCTCTACGTGCGGCAAGGGATTCCAATGCAAAAGCTATCTCATTGTACACCAAAGAGTACACTCTGATCTGAAGCCATACGCGTGCACGAAGTGTAGTCAAAATTTCAAGACAAAGCAGTCGCTGCTGGATCATGAGAATCGTCACCTCGGTGTGAAGCCATACATGTGCGAGATCTGTGGCCGCGGTTTCATCACCAAGGGTCTCTGCAAGAGCCATCAAAAGATACACTCCGGCACCGATAATCGCCAATATCCATGCGCGGTATGCAACAAGATGTTTGTCAGCAAGAGTTACCTCAACACTCACCTGCGTATTCACACGGGCGAAAAACCGTATCTATGCGAGGTGTGCGGCAAGGGATTCCTTACGCGCGTCGACCTCAGGATCCACTCGACTATGCACACCGGCGAGAAGAGCTTCAAATGCGATATGTGCGGGAAGGTGTTTGCTCGACGCGCGGCTCTACGATGCCATCGGCGATCACACACGGGCGAACGTCCTTATAAATGCGACATCTGCGGCAAGACGTTCACGCAATTCAGCCCGATGGCAATTCACAAGCGTTTGCACACCGGCGAGCGGCCGTACGAGTGCGGTGAATGCGGTAAAGCTTTCGTCTCTAGGTCGACCATGATGTCTCATAGAAAGAAGCATCACGTTACGACCGCCGTACAAAAGGACGCGTCTGTACCGCATAATGAAGACGCGGAGGTCAAGATTATCCTCTCCGATATCATAGTCCGAGATACACACGATGGGATCCAAGTCACTGCAGATTAA
Protein Sequence
MAVVEEFDYLCRLCAAKTGILMGLPIFETGDQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAFKLDQLFDFREKCLHTEGMFMEMLKEIGKEEVVHISEHDLASVNNMGTIQRNLNSIQINNENVQSHSAVAHEAAESTIHTMQVMDEMDLAGGEQVVTQEEMGQQDADIQDIDCLDGDTVRMVDEHIREVSNHQIAMHLDSDITVVSNLGGHLSQLGINYVTSINPEDQSQEQIVHYCESVKYEADSIKPEYHRLTTEEPQHVLKNDVTVDNFVSSQAETESEIDESCMNENGTHEHVDSVNALPSTSQINGVSCEIMVKYTKRTKNALLESTLSNPTIDETGSHWYVCPFCNEAALETTNLAAHFEQHFCYCSCSLYFTSVEVLNLHKEQCNVYKTEVVDKEKKDAQLNVISSQESNDNQDEQKKQSTVRRKWTAKVCTECGKQYKSNYKLQEHMRKHTGEKPFQCTTCDKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYACTKCSQNFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLRIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRSHTGERPYKCDICGKTFTQFSPMAIHKRLHTGERPYECGECGKAFVSRSTMMSHRKKHHVTTAVQKDASVPHNEDAEVKIILSDIIVRDTHDGIQVTAD