Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01000616.1:31888-39046[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.1 6.9e+02 1.6 0.1 1 9 353 361 353 375 0.70

2 11 1.2e-06 0.00016 22.5 1.8 2 23 444 465 443 465 0.97

3 11 2e-05 0.0027 18.6 0.4 1 23 471 493 471 493 0.98

4 11 0.00036 0.049 14.7 2.4 1 23 499 521 499 521 0.98

5 11 0.00012 0.016 16.2 3.0 1 23 527 549 527 549 0.98

6 11 0.00011 0.014 16.3 1.8 1 23 555 577 555 577 0.99

7 11 3.6e-07 4.9e-05 24.1 0.4 1 23 585 607 585 607 0.98

8 11 0.0046 0.63 11.2 0.2 1 23 613 635 613 635 0.94

9 11 5.2e-06 0.00071 20.4 1.7 1 23 641 663 641 663 0.98

10 11 1.9e-05 0.0025 18.7 0.6 1 23 669 691 669 691 0.98

11 11 3e-06 0.00041 21.2 2.5 1 23 697 719 697 720 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.1	6.9e+02	1.6	0.1	1	9	353	361	353	375	0.70
2	11	1.2e-06	0.00016	22.5	1.8	2	23	444	465	443	465	0.97
3	11	2e-05	0.0027	18.6	0.4	1	23	471	493	471	493	0.98
4	11	0.00036	0.049	14.7	2.4	1	23	499	521	499	521	0.98
5	11	0.00012	0.016	16.2	3.0	1	23	527	549	527	549	0.98
6	11	0.00011	0.014	16.3	1.8	1	23	555	577	555	577	0.99
7	11	3.6e-07	4.9e-05	24.1	0.4	1	23	585	607	585	607	0.98
8	11	0.0046	0.63	11.2	0.2	1	23	613	635	613	635	0.94
9	11	5.2e-06	0.00071	20.4	1.7	1	23	641	663	641	663	0.98
10	11	1.9e-05	0.0025	18.7	0.6	1	23	669	691	669	691	0.98
11	11	3e-06	0.00041	21.2	2.5	1	23	697	719	697	720	0.96

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAGTTCGATTACCTGTGCCGCCTGTGCGCGACCAAGACTGGCATCCTGATGGGCCTGCCGATATTCGAGGCCGGCGATCAGATGCGCAACATCGACAAGAAGATAGCGGCCTGCCTGCCGGTTCAGGTATCGTTGACGGATCAACTACCCAAGGTAGTTTGCGAGGAGTGCGCCTTCAAACTGGATCAGTTGTTCGACTTTCGCGAGAAATGTCTGCACACAGAGGGGATGTTTATGGAAATGCTGAAGGAGATCGGTAAAGAGGACGTCGTGCACATTTCGGAGCACGATTTGGCGAGCGTGAATAACATGGGCACAATTCAGAGAAACCTGACTAGCATACAGATTAATAACGAAAATGTACAAAGCCACTCGGCCGTAGCTCACGAGACTGCGGAATCCACCATACACACGATGCAAGTAATGGACGAAATGGACCTGGCTGGTGGCGAACAAGTGGTTACTCAGGAAGAAATGGGTCAACAGGACGCGGATATACAAGGCATCGACTGTCTAGATGGTGACACTGTAAGAATGGTCGACGAACATATACGAgagGTTTCAAATCATCAGATTACAATGCACTTGGATAGCGATATGACTGTAGTGAGTAACCTGGGTGGCCACTTGAGTCAATTAGGGATAAATTATGTTACTTCTATCAATCCTGAAGATCAGAGCCAAGAGCAGATAGTACACTActgtgaaaatgtaaaatatgaggAGGATTCAATAAAACAGGAGTTCCACAGACTGCAGGACAGATTAAACACGGAAGAACCACAACACGTACTCAAAAATGATGTAGCAGTAGATAATTTTGTGTCCTCCCAAGCTGAAACAGAAAGTGAAATAGAAGAGTCTTGCATAAACGAAAACGGACCTCGCGAACACATGGACTCCGTGAATGCTTTGCCATCTACAAGCCAGATAAATGGCGTACCTTGCGAAATAATGGTTAAGTATACGAAGAGAACGAAGGACGCGTTATTGGAGTCCACGCTTAGCAATCCTACTGTAGACGAGACCGGTTCGCACTGGTACGTGTGTCCGTTTTGCAACGAAGCAGCTTTGGAAACAACTAATCTAGCCGTACACTTCGAGCAGCATTTCTGTTGTTGTTCCTGCGGTTTATATTTTACTGGTGTCGAGGTATTAAATCTACACAAGGAGcaatgtaatgtatataaaaccgAAGTAATCAATAAGGAGAAGAAGGACGTACAGTTAAACGTAGTATCGTCGCAAGAGAGCAGTGACAATCAAGAAGGGCAGAAGAAACAGTCGACGGTGAGACGGAAGTGGACCGCGAAGGTATGCACGGAATGCGGCAAGCAGTACAAGTCGAATTACAAGCTGCAGGAGCACATGCGCAAGCACACGGGCGAAAAGCCGTTTCAGTGTACAACGTGCGAGAAGGCGTTCCGCAGCAAGATCGGTCTCGCACAGCACACGGCCACGCACACGGGCCAATTCGACTACAACTGTTCCACATGCGGCAAGGGATTCCAATGCAAGAGCTATCTCATTGTACACCAAAGAGTGCACTCGGACCTGAAGCCGTACTCTTGCACGACGTGCAGTCAGAACTTCAAGACGAAGCAGTCGCTGCTCGACCACCAGAACCGTCATCTCGGCGTGAAGCCGTACAAATGCGAGATCTGCGGCCGCGGCTTCATCACTAAGGGTCTCTGCAAAAGCCATCAGAAGATACACTCCGGCACCGACAATCGCCAGTACCCGTGCGCGGTGTGCAACAAGATGTTCGTCAGCAAGAGTTACCTGAACACGCACCTGCGCATTCACACGGGCGAGAAGCCGTATCTGTGCGAGGTGTGCGGCAAGGGATTCCTGACGCGCGTCGACCTCAGGATCCACTCGACCATGCACACCGGGGAGAAGAGCTTCAAATGCGAGATTTGCGGGAAGGTGTTTGCGCGACGCGCAGCCTTACGCTGCCATCGGCGATCGCACACGGGCGAGCGTCCCTACAGATGCGACGTCTGCGGCAAAACGTTCACGCAGTTTAGCCCAATGGCAATCCACAAGCGTTTGCACACTGGCGAGCGGCCGTACGAGTGCAGTGAGTGCGGCAAGGCCTTCGTGTCTAGGTCAACCATGATGTCCCACAGAAAGAAGCATCACGTTACGACCGCTATACAAAAGGACGCGTCTGTGCCACATAACGAAGACACGGAGGTCAAGATCATTCTCTCATCCGATATCATAGTCCGAGATTCACACGATGGAATCCAAATTACCGCAGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAFKLDQLFDFREKCLHTEGMFMEMLKEIGKEDVVHISEHDLASVNNMGTIQRNLTSIQINNENVQSHSAVAHETAESTIHTMQVMDEMDLAGGEQVVTQEEMGQQDADIQGIDCLDGDTVRMVDEHIREVSNHQITMHLDSDMTVVSNLGGHLSQLGINYVTSINPEDQSQEQIVHYCENVKYEEDSIKQEFHRLQDRLNTEEPQHVLKNDVAVDNFVSSQAETESEIEESCINENGPREHMDSVNALPSTSQINGVPCEIMVKYTKRTKDALLESTLSNPTVDETGSHWYVCPFCNEAALETTNLAVHFEQHFCCCSCGLYFTGVEVLNLHKEQCNVYKTEVINKEKKDVQLNVVSSQESSDNQEGQKKQSTVRRKWTAKVCTECGKQYKSNYKLQEHMRKHTGEKPFQCTTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTTCSQNFKTKQSLLDHQNRHLGVKPYKCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLRIHSTMHTGEKSFKCEICGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECSECGKAFVSRSTMMSHRKKHHVTTAIQKDASVPHNEDTEVKIILSSDIIVRDSHDGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01087395;
90% Identity: iTF_00385783;
80% Identity: -