Pbar007937.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- -
- Assembly
- GCA_000187915.1
- Location
- NW:590441-595825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.9 2.7e+02 1.6 0.1 1 9 344 352 344 366 0.70 2 12 5.6 3.9e+02 1.1 2.0 1 20 367 386 367 388 0.88 3 12 6.9e-07 4.8e-05 22.9 1.8 2 23 435 456 434 456 0.97 4 12 1.6e-05 0.0011 18.6 0.4 1 23 462 484 462 484 0.98 5 12 0.00028 0.019 14.7 2.4 1 23 490 512 490 512 0.98 6 12 3.5e-05 0.0025 17.5 3.0 1 23 518 540 518 540 0.98 7 12 0.00019 0.013 15.2 1.3 1 23 546 568 546 568 0.98 8 12 2.8e-07 1.9e-05 24.1 0.4 1 23 576 598 576 598 0.98 9 12 0.0033 0.23 11.3 0.2 1 23 604 626 604 626 0.94 10 12 4.8e-05 0.0034 17.1 2.3 1 23 632 654 632 654 0.98 11 12 3.9e-05 0.0028 17.3 0.4 1 23 660 682 660 682 0.98 12 12 0.0016 0.11 12.2 4.4 1 23 688 710 688 711 0.95
Sequence Information
- Coding Sequence
- ATGGCCGTCGTCGAGGAGTTCGATTACCTGTGCCGCCTGTGCGCGGCCAAAACTGGTATTCTGATGGGCCTGCCGATATTCGAGGCCGGCGACCAGATGCGCAACATCGACAAGAAGATAGCAGCCTGCCTGCCGGTTCAGgTGTCATTGACAGATCAGTTGCCCAAGGTTGTATGTGAAGAATGTGCATTTAAATTAGACCAGTTGTTCGATTTTCGCGAGAAGTGTTTACATACAGAAGGAATGTTTATGgaaatgttaaaagaaattgGTAAAGAAGACGTCGTGCATATGACAGAGCACGACTTGGCAAGTGTGAATAACATGGGCACAATGCAAAGAAACTTGAACAGTATACAGATTAATAGCGAAAATGTACAAAACCATTCAGCTGTATCTCACGAAGCTGCAGAGTCTACCATACACACGATGCAGGTGATGGACGAAATGGATCTAGCTGGCGGTGAACAAGTAGTCACTCAGGAAGAGATAGGTCAGCAGGATGCAGACATTACAGGCATTGATTGTCTAAGTGGTGACACTGTGAGAATGGTTGATGCACATATACGAGaaGTTTCAAATCATCAAATTGCAATGCACTTGGAAAACGGCATATGTGGAAACTTGGATCCCCTGAGTCAATTGGGTATAAATTATGTCACTTCTATCAATCCTGAAGATCAGAGTCAAGAACAGATAGTGCATTATtgtgaaaatgttaaatacgAAGCGAATCCGATAAAACAGGAATACCATAGATTAACCACAGAAGAGCCACAGCACGTACTCAAAAATGATGTACCGGCAGATAATTTTGTTCCTCCTGAAACAGAAAACGAAATAGACGAATCTTGTATGACTGAAAATGGAACTCTAGAACATGTTAATTCCGTAAATGCTTTACCATCTACAAGTCAGATAAACGACGTACCTTGCGAGATAATGGTTAAATACACAAAGAGAACGAAACATGCGTTATTGGAGTCTACGCTTAACAATCCCACTATAGACGAGACCGGTTCGCACTGGTACGTTTGCCCGTTCTGTAACGAAGCAGCTTTGGAAACGACCAATCTAGCCGTACACTTTGAACAGCATTTCTGTTGCTGTCCTTGcggtttatattttactagTGTCGAgatgttaaatttacataaggAGCAATGCAATGTATATAAAACGGAGGTAGtcgataaagaaaagaaggacGCACAGTTAAACGTAGTAACGCCACAAGAGAGCAATGACAATCAAGAAGGGCAGAAGAAGCAGTCGACGGTGAAACGGAAGTGGACCGCGAAAGTGTGTACGGAATGCGGCAAGCAGTACAGAACGAATTACAAGTTGCAGGAGCATATGCGCAAACACACGGGCGAAAAGCCGTTTCAGTGTACGACGTGTGAGAAAGCCTTCCGCAGTAAAATCGGCCTCGCGCAGCACACGGCTACACACACGGGCCAGTTCGATTACAACTGCTCGACGTGCGGCAAGGGATTTCAATGCAAGAGCTATCTCATCGTACATCAAAGAGTACACTCGGACTTGAAACCGTACCCATGCACCAAGTGCGGTCAGCACTTCAAGACGAAACAGTCGCTGCTGGACCACGAGAACCGTCACCTCGGCGTGAAGCCGTACATGTGCGAGATCTGCGGTCGTGGTTTCATCACCAAAGGCCTCTGCAAGAGTCATCAGAAGATCCACTCTGGTACGGACAATCGCCAGTATCCATGCGCGGTGTGCAACAAGATGTTTGTCAGCAAGAGTTACCTGAACACGCACCTGCGCATCCATACGGGCGAAAAACCGTACCTGTGCGAGGTGTGTGGCAAAGGATTTCTTACGCGGGTCGACCTCAAGATCCATTCGACTATGCATACCGGAGAGAAAAGTTTCAAATGCGAATCTTGCGGAAAGGTATTTGCTCGACGCGCCGCGTTACGTTGCCATCGACGGTCGCATACAGGCGAACGTCCTTACAAGTGCGATGTTTGCGACAAGGCGTTCACACAATTCAGTCCGATGGCAATTCACAAGCGTTTACACACTGGCGAGCGGCCATACGAGTGCGACGTATGCGGCAAAGCCTTTGTGTCCAGGTCGACCATGATGTgtcataaaaagaaacatcatATTACGACGAATGCTGTACAAAAGGACGCGCTTGTGCCGCACAACGAAGATGCGGAGGTCAAGATGATTCTTTCGTCCGATATCATAGTCAGAGAAACACATGATGGGATCCAAATCACCGCGGATTGA
- Protein Sequence
- MAVVEEFDYLCRLCAAKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAFKLDQLFDFREKCLHTEGMFMEMLKEIGKEDVVHMTEHDLASVNNMGTMQRNLNSIQINSENVQNHSAVSHEAAESTIHTMQVMDEMDLAGGEQVVTQEEIGQQDADITGIDCLSGDTVRMVDAHIREVSNHQIAMHLENGICGNLDPLSQLGINYVTSINPEDQSQEQIVHYCENVKYEANPIKQEYHRLTTEEPQHVLKNDVPADNFVPPETENEIDESCMTENGTLEHVNSVNALPSTSQINDVPCEIMVKYTKRTKHALLESTLNNPTIDETGSHWYVCPFCNEAALETTNLAVHFEQHFCCCPCGLYFTSVEMLNLHKEQCNVYKTEVVDKEKKDAQLNVVTPQESNDNQEGQKKQSTVKRKWTAKVCTECGKQYRTNYKLQEHMRKHTGEKPFQCTTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCTKCGQHFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCESCGKVFARRAALRCHRRSHTGERPYKCDVCDKAFTQFSPMAIHKRLHTGERPYECDVCGKAFVSRSTMMCHKKKHHITTNAVQKDALVPHNEDAEVKMILSSDIIVRETHDGIQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087395;
- 90% Identity
- iTF_00385783;
- 80% Identity
- -