Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000095.1:237621-240659[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.5 8.5e+02 1.9 0.1 1 18 352 369 352 374 0.65

2 11 1.6e-06 0.00025 22.5 1.8 2 23 442 463 441 463 0.97

3 11 7.7e-06 0.0012 20.3 0.5 1 23 469 491 469 491 0.98

4 11 0.00048 0.074 14.7 2.4 1 23 497 519 497 519 0.98

5 11 0.00043 0.067 14.8 2.8 1 23 525 547 525 547 0.98

6 11 0.00033 0.051 15.2 1.3 1 23 553 575 553 575 0.98

7 11 2.4e-07 3.6e-05 25.1 0.9 1 23 583 605 583 605 0.98

8 11 0.0062 0.95 11.2 0.2 1 23 611 633 611 633 0.94

9 11 1.3e-05 0.0019 19.6 1.7 1 23 639 661 639 661 0.98

10 11 3.6e-05 0.0056 18.2 0.5 1 23 667 689 667 689 0.98

11 11 5.9e-06 0.0009 20.7 2.2 1 23 695 717 695 718 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.5	8.5e+02	1.9	0.1	1	18	352	369	352	374	0.65
2	11	1.6e-06	0.00025	22.5	1.8	2	23	442	463	441	463	0.97
3	11	7.7e-06	0.0012	20.3	0.5	1	23	469	491	469	491	0.98
4	11	0.00048	0.074	14.7	2.4	1	23	497	519	497	519	0.98
5	11	0.00043	0.067	14.8	2.8	1	23	525	547	525	547	0.98
6	11	0.00033	0.051	15.2	1.3	1	23	553	575	553	575	0.98
7	11	2.4e-07	3.6e-05	25.1	0.9	1	23	583	605	583	605	0.98
8	11	0.0062	0.95	11.2	0.2	1	23	611	633	611	633	0.94
9	11	1.3e-05	0.0019	19.6	1.7	1	23	639	661	639	661	0.98
10	11	3.6e-05	0.0056	18.2	0.5	1	23	667	689	667	689	0.98
11	11	5.9e-06	0.0009	20.7	2.2	1	23	695	717	695	718	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAGTTCGATTACCTGTGCCGTCTATGCGCGACCAAGACTGGCATCCTGATGGGCCTGCCGATATTCGAGGCCGGCGATCAGATGCGCAACATCGACAAGAAGATCGCGGCCTGTCTGCCGGTTCAGGTGTCGTTGACGGATCAACTGCCCAAAGTGGTGTGCGAGGATTGCGCGTTCAAACTGGATCAGTTGTTTGATTTCCGCGAGAAATGTCTGCACACGGAGGGGATGTTTATGGAGATGTTGAAGGAGATCGGGAAGGAGGAGGTCATGCACATATCGGAGCACGATTTAGCGAGCGTGAATAACATGGGCACAATTCCGAGAAACCTGAATAGCATACAGATTAATAACGAAAATGTACAAAGCCACTCGGTCGTGGCTCACGAGGCTACGGAATCCACCATGCACACGATGCAGGTAATGGACGAGATGGATCTGGCCGGTGGCGAACAAGTGGTCACTCAGGAAGAGATGGGTCAGCAAGATGCGGATATACAAGACATTGACTGTCTAGATGGTGACACGGTCAGAATGGTCGATGAACATATACGAGAGGTTTCAAACCATCAGATCGCAATACACTTGGATAGCGATATAACTGTGGTGAGTAACCTGGGTGGCCACTTGAGTCAATTAGGGATAAATTACGTTACTTCGATCAATCCTGAAGATCAGAGTCAAGAGCAGATAGTGCATTACTGTGAAAATGTGAAATACGAGACAGATTCAATGAAACAGGAGTACCACAGATTGCAAGACAGATTAACCACCGAAGAGACACAGCAcgtactaaaaaataatGTAGCAGTAGATAATTTTGTATCCACCCAAGCCGAAACAGAAACTGAAATAGAGGAGTCTTGCATGAACGAAAATGGAACTCGCGAGCACGTGGACTCCGTGAATGATTTACCATCTACGAGTCAGATAAACGGCGTGTGtgaaataatgattaaataCACGAAGAGAACGAAGCACGCGTTATTGGAATCTACGCTCAGCAACCCTACCGTGGATGAAACCGGCTCGCACTGGTACGTGTGCCCATTCTGCAACGAAGCAGCTTTGGAGACGACCAATTTAGCCGCACATTTCGAGCAGCACTTCTGCTGCTGTCCCTGcggtttttattttactagCGTCGAGGTATTAAATCTGCACAAGGAGCGatgtaatgtatataaaactgaAATAGTCGATAAGGAGAAGGACGCACAGTTAAACGTAGTACCGTCGCAAGAGAGCAATGACAATCAAGAGGGACAGAAGAAACAGTCGACGGTGAGACGGAAGTGGACCGCGAAGGTGTGTACGGAATGCGGCAAGCAATACAAGTCGAATTACAAGCTGCAGGAGCACATGCGCAAGCACACGGGCGAGAAGCCGTTTCAGTGTACGACGTGCGATAAGGCGTTCCGCAGCAAGATCGGTCTCGCGCAGCACACGGCCACGCACACGGGCCAGTTCGACTACAACTGCTCCACGTGCGGCAAGGGATTCCAATGCAAGAGCTATCTCATCGTACACCAAAGGGTGCACTCGGACCTGAAGCCGTACTCGTGCACGAAGTGCAGTCAGAACTTCAAGACGAAGCAATCGCTGCTGGACCACGAGAACCGTCACCTCGGCGTGAAGCCGTACATGTGCGAGATCTGCGGCCGTGGTTTCATCACCAAGGGTCTCTGCAAGAGCCATCAGAAGATACACTCCGGCACTGACAATCGCCAATACCCGTGCGAGGTGTGCAAGAAGATGTTCGTCAGCAAGAGTTACCTGAACACGCACCAGCGCATTCACACGGGCGAGAAGCCGTATCTGTGCGAGGTGTGCGGCAAGGGATTCCTTACGCGCGTCGACCTCAGGATCCACTCGACCATGCACACCGGCGAGAAGAGCTTCAAATGCGAAGTCTGCGGGAAGGTGTTCGCTCGACGCGCGGCGCTACGCTGCCATCGGCGGTCGCACACGGGCGAGCGTCCTTACAAATGCGACGTCTGCGGCAGATCGTTCACGCAGTTCAGCCCGATGGCGATCCACAAGCGTTTGCACACCGGCGAGCGGCCGTACGACTGCGACGACTGCGGCAAGGCTTTCGTGTCTAGGTCAACTATGATGTCTCACAGGAAGAAGCATCACGTTACGACCGTTGCGCAAAAGGACGAGTCTGTGCCGCAGAACGAAGACGCGGAGGTCAAGTTCATCCTCTCGTCCGATATCCTAGTTCGAGATACACACGAAGGGCTCCAAATCACCGCGGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSLTDQLPKVVCEDCAFKLDQLFDFREKCLHTEGMFMEMLKEIGKEEVMHISEHDLASVNNMGTIPRNLNSIQINNENVQSHSVVAHEATESTMHTMQVMDEMDLAGGEQVVTQEEMGQQDADIQDIDCLDGDTVRMVDEHIREVSNHQIAIHLDSDITVVSNLGGHLSQLGINYVTSINPEDQSQEQIVHYCENVKYETDSMKQEYHRLQDRLTTEETQHVLKNNVAVDNFVSTQAETETEIEESCMNENGTREHVDSVNDLPSTSQINGVCEIMIKYTKRTKHALLESTLSNPTVDETGSHWYVCPFCNEAALETTNLAAHFEQHFCCCPCGFYFTSVEVLNLHKERCNVYKTEIVDKEKDAQLNVVPSQESNDNQEGQKKQSTVRRKWTAKVCTECGKQYKSNYKLQEHMRKHTGEKPFQCTTCDKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTKCSQNFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCEVCKKMFVSKSYLNTHQRIHTGEKPYLCEVCGKGFLTRVDLRIHSTMHTGEKSFKCEVCGKVFARRAALRCHRRSHTGERPYKCDVCGRSFTQFSPMAIHKRLHTGERPYDCDDCGKAFVSRSTMMSHRKKHHVTTVAQKDESVPQNEDAEVKFILSSDILVRDTHEGLQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01087395;
90% Identity: iTF_00385783;
80% Identity: -