Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: -
Assembly: GCA_003063835.1
Location: NJRP01000058.1:1104935-1108118[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6 6.9e+02 1.5 0.1 1 9 350 358 350 372 0.72

2 11 1.3e-06 0.00015 22.5 1.8 2 23 441 462 440 462 0.97

3 11 6.3e-06 0.00073 20.3 0.5 1 23 468 490 468 490 0.98

4 11 0.00039 0.045 14.7 2.4 1 23 496 518 496 518 0.98

5 11 0.00035 0.041 14.8 2.8 1 23 524 546 524 546 0.98

6 11 0.00027 0.032 15.2 1.3 1 23 552 574 552 574 0.98

7 11 2.9e-06 0.00033 21.4 0.5 1 23 582 604 582 604 0.98

8 11 0.005 0.58 11.2 0.2 1 23 610 632 610 632 0.94

9 11 1.5e-05 0.0017 19.2 2.2 1 23 638 660 638 660 0.98

10 11 2e-05 0.0024 18.7 0.6 1 23 666 688 666 688 0.98

11 11 2.5e-06 0.00029 21.6 2.1 1 23 694 716 694 717 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6	6.9e+02	1.5	0.1	1	9	350	358	350	372	0.72
2	11	1.3e-06	0.00015	22.5	1.8	2	23	441	462	440	462	0.97
3	11	6.3e-06	0.00073	20.3	0.5	1	23	468	490	468	490	0.98
4	11	0.00039	0.045	14.7	2.4	1	23	496	518	496	518	0.98
5	11	0.00035	0.041	14.8	2.8	1	23	524	546	524	546	0.98
6	11	0.00027	0.032	15.2	1.3	1	23	552	574	552	574	0.98
7	11	2.9e-06	0.00033	21.4	0.5	1	23	582	604	582	604	0.98
8	11	0.005	0.58	11.2	0.2	1	23	610	632	610	632	0.94
9	11	1.5e-05	0.0017	19.2	2.2	1	23	638	660	638	660	0.98
10	11	2e-05	0.0024	18.7	0.6	1	23	666	688	666	688	0.98
11	11	2.5e-06	0.00029	21.6	2.1	1	23	694	716	694	717	0.96

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAGTTCGATTACCTGTGCCGCCTATGCGCGACCAAGACTGGCATCCTGATGGGCCTGCCGATATTCGAGGCCGGCAATCAGATGCGCAACATCGACAAGAAAATAGCGGCCTGCCTACCGGTTCAGGTGTCGTTGACAGATCAACTGCCCAAAGTGGTCTGCGAAGAGTGCGCGTTCAAACTGGATCAGCTGTTTGATTTTCGTGAGAAATGTCTACACACGGAGGGAATGTTTATAGAAATGTTGAAGGAGATTGGCAAGGAGGATGTCGTGCATATATCGGAGCACGATTTGGCAAGCGTTAATAACATGGGCACAATTCAGAGAAACCTGAATAGCATACAGATTAATAACGAAAATGTACAAAGCCATTCGGCCGTGGCTCACGAGACTACGGAATCTACTATACACACGATGCAAGTAATGGACGAGATGGACCTGGCTGGTGGTGAACAAGTGGTTACTCAGGAGGAAATAGGTCAACAAGATGCGGATATACAAGTCACGGGTATTGACTGTCTAGATGGTGATACCGTGAGAATGGTTGACGAACATATACGAGAAGTTTCAAACCATCAGATTACAATGCACTTGGAAGGTGATATGACTGTGGTGGGAAATCTAGATGGCCACTTGAGTCAATTAGGGATAAATTATGTTACTTCTATCAATCCTGAAGATCAAAGCCAAGAACAGATAGTACATTACtgtgaaaatgtaaaatacaacACGGATCCAATGAAACAGGAATATAACAGATTAACCACAGAAGAGTCACAACATGTACTCAAAAATGACGTACCAGTAGATAATTTTGTCTCCCAAGCTGAAACAGAAAGTGAAATAGAGGAATCTTGCATGAACGAAAATGGAACTCGCGAACATGTGAATTCCGTGAATGTTTTACCATCTACAAGTCAAATAAACGGCGTACCTTGCGAAATAATGGTCAAATACACCAAAAGaacaaaaaatgcattattgGAATCTACGCTCAGCAACCCTACTATAGATGAAACTGGTTCACACTGGTATGTGTGCCCATTCTGCAACGAAGCAGCTTTGGAGACGACCAATCTAGCCATACATTTCGAGCAGCATTTTTGTTGCTGTCCCtgcgatttatattttactagtGTCGAGGTATTAAATTTACACAAGGAGCAATGCGATGTATATAAAACTGAAGTAGTCGataaggagaagaagaacgcaCAGTTAAACGTAGCATCGTCACAAGAGAGCAATGACAATCAAGAAGGGCAGAAGAAACAGTCGACGGTGAGACGAAAGTGGACCGCGAAGGTGTGCACGGAATGTGGCAAGCAGTACAAGTCGAATTACAAGCTGCAGGAACATATGCGCAAGCATACGGGCGAGAAGCCGTTTCAGTGTACGACGTGCGACAAGGCGTTTCGCAGTAAGATCGGCCTCGCGCAGCACACGGCCACGCACACGGGTCAGTTTGACTACAACTGCTCCACGTGCGGCAAGGGATTCCAATGCAAGAGCTATCTCATTGTACACCAAAGAGTGCACTCGGACCTAAAGCCGTACTCGTGCACGAAGTGCAGTCAGAATTTCAAGACGAAGCAGTCACTGCTGGACCATGAGAACCGACACTTAGGCGTAAAGCCGTACATGTGCGAGATCTGCGGCCGCGGTTTCATCACCAAGGGCCTGTGCAAGAGCCATCAAAAGATACATTCTGGCACTGACAATCGCCAATATCCATGCGCAGTGTGCAACAAGATGTTTGTCAGTAAGAGTTATCTGAACACGCATTCGCGCATTCATACAGGCGAGAAACCGTATCTGTGCGAGGTATGCGGCAAAGGATTCCTTACGCGGGTCGACCTCAGGATTCACTCGACCATGCACACCGGCGAGAAGAGCTTCAAATGCGAGATGTGCGGAAAAGTGTTCGCTCGACGCGCGGCGCTACGCTGCCATCGACGGTCGCACACGGGCGAGCGTCCTTACAGATGCGACGTCTGCGGCAAAACGTTCACGCAATTTAGTCCGATGGCAATCCACAAGCGTCTGCACACTGGCGAGCGACCGTACGAATGCGACGAGTGCGGCAAAGCCTTCGTGTCTAGGTCGACCATGATGTCTCATAGAAAGAAGCATCACGTTACAACGACCGCTGTACAAAAGGACGTACTGCATAATGAAGACGCGGAGGTCAAGCTCATTCTCTCCGATATTATAGTCCGAGAGACACACGATGGGATCCAACTCAGCGCAGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGNQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAFKLDQLFDFREKCLHTEGMFIEMLKEIGKEDVVHISEHDLASVNNMGTIQRNLNSIQINNENVQSHSAVAHETTESTIHTMQVMDEMDLAGGEQVVTQEEIGQQDADIQVTGIDCLDGDTVRMVDEHIREVSNHQITMHLEGDMTVVGNLDGHLSQLGINYVTSINPEDQSQEQIVHYCENVKYNTDPMKQEYNRLTTEESQHVLKNDVPVDNFVSQAETESEIEESCMNENGTREHVNSVNVLPSTSQINGVPCEIMVKYTKRTKNALLESTLSNPTIDETGSHWYVCPFCNEAALETTNLAIHFEQHFCCCPCDLYFTSVEVLNLHKEQCDVYKTEVVDKEKKNAQLNVASSQESNDNQEGQKKQSTVRRKWTAKVCTECGKQYKSNYKLQEHMRKHTGEKPFQCTTCDKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTKCSQNFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHSRIHTGEKPYLCEVCGKGFLTRVDLRIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDECGKAFVSRSTMMSHRKKHHVTTTAVQKDVLHNEDAEVKLILSDIIVRETHDGIQLSAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01087395;
90% Identity: iTF_00385783;
80% Identity: -