Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:415492-420207[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.15 10 6.1 0.0 1 23 352 374 352 374 0.94

2 12 3.1 2e+02 2.0 3.0 1 20 375 394 375 396 0.92

3 12 9.9e-07 6.5e-05 22.5 1.8 2 23 443 464 442 464 0.97

4 12 1.7e-05 0.0011 18.6 0.4 1 23 470 492 470 492 0.98

5 12 0.0003 0.02 14.7 2.4 1 23 498 520 498 520 0.98

6 12 0.00027 0.018 14.8 2.8 1 23 526 548 526 548 0.98

7 12 0.00021 0.014 15.2 1.3 1 23 554 576 554 576 0.98

8 12 3e-07 2e-05 24.1 0.4 1 23 584 606 584 606 0.98

9 12 0.0038 0.25 11.2 0.2 1 23 612 634 612 634 0.94

10 12 4.4e-06 0.00029 20.4 1.7 1 23 640 662 640 662 0.98

11 12 1.1e-05 0.00072 19.2 0.6 1 23 668 690 668 690 0.98

12 12 1.9e-06 0.00012 21.6 2.1 1 23 696 718 696 719 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.15	10	6.1	0.0	1	23	352	374	352	374	0.94
2	12	3.1	2e+02	2.0	3.0	1	20	375	394	375	396	0.92
3	12	9.9e-07	6.5e-05	22.5	1.8	2	23	443	464	442	464	0.97
4	12	1.7e-05	0.0011	18.6	0.4	1	23	470	492	470	492	0.98
5	12	0.0003	0.02	14.7	2.4	1	23	498	520	498	520	0.98
6	12	0.00027	0.018	14.8	2.8	1	23	526	548	526	548	0.98
7	12	0.00021	0.014	15.2	1.3	1	23	554	576	554	576	0.98
8	12	3e-07	2e-05	24.1	0.4	1	23	584	606	584	606	0.98
9	12	0.0038	0.25	11.2	0.2	1	23	612	634	612	634	0.94
10	12	4.4e-06	0.00029	20.4	1.7	1	23	640	662	640	662	0.98
11	12	1.1e-05	0.00072	19.2	0.6	1	23	668	690	668	690	0.98
12	12	1.9e-06	0.00012	21.6	2.1	1	23	696	718	696	719	0.96

Sequence Information

Coding Sequence: ATGGCCGTCATCGAGGAGTTCGATTACCTGTGCCGTCTGTGTGCGACCAAGACTGGCATCTTGATGGGTCTGCCGATATTCGAGGCCGGCGATCAGATGCGCAACATCGACAAGAAGATAGCGGCCTGTCTACCGGTTCAGGTGTCGTTGACAGATCAACTGCCCAAAGTGGTCTGTGAAGAATGTGCGTTTAAACTGGACCAGTTGTTTGATTTCCGTGAGAAATGTCTACATACAGAAGGAATGTTTATGGAAATGTTGAAGGAGATTGGCAAAGAAGAGATTGTGCATCTATCCGAGCACGATTTGGCAAGTGTGAATAACATGGGCACAATTCAGAGAAACCTGACTAGCATAcagattaataatgaaaatgtacAAAGCCATTCGGCCGTAGCTCACGAAACTACAGAATCTACTATACACACGATGCAGGTAATGGACGAAATGGACCTGGCTGGTGGCGAACAAGTGGTTACACAAGAAGAAATAGGTCAACAAGATGCAGATATACAAGGCATTGACTGTTTAGATGGTGATACCGTGAGAATGGTTGATGAACATATACGAGAGGTTTCAAATCATCAAATTGCAATGCACTTGGATAGTGATATTGCTGTAGTGGGAAATCTGGGTGGCCACTTGAGTCAATTAGGGATAAATTATGTTACTTCTATTAATCCTGAAGATCAGAGCCAAGAACAGATAGTACATTACtgtgaaaatgtaaaatacgagGCGGATCCAATAAAACAGGAATACCACAGATTGCAAGATAGATTAACCACGGAAGAGCCACAGCACATACTCAAAAATAATgTACCAGTAGATAATTTTGTCTCTCCTCAAGCTGAAACGGAAAGTGAAATAGAAGAATCTTGTATAAACGAAAATGGAACTCACGAACATGTGGACTCCATGAACTTACCATCTACAAGTCAGATAAATGGCGTACCTTGTGAAATAATGGTTAAATACACGAAGAGAACGAAACACGCGTTATTAGAGTCTACGCTTAACAACCCTAGCATAGATGAGACCGGTTCTAACTGGTACATGTGCCCGTTCTGCAACGAAGCAGCTGTGGAAACGACCAATCTAGCCGCACATTTCGAGCAGCATTTCTGCTGCTGTTCCtgcgatttatattttactagtGTCGAGggattaaatttacataaggAGCAATGCGATGTATATAAAACTGAAGTAGTCAATAAGGAGAAAAAGGACGCACAGTTAAATGCAGTATCGTTGCAAGAGAGCAGTGACAATCAAGAAGGGCAGAAGAAACAGTCGACGGTAAGACGAAAGTGGACCGCGAAAGTGTGTACGGAATGCGGCAAGCAGTACAAGTCGAATTACAAGCTACAGGAACATATGCGCAAGCACACAGGCGAGAAACCGTTTCAATGTACGACGTGCGAGAAGGCGTTTCGCAGCAAGATTGGCCTCGCGCAGCACACAGCCACACACACAGGCCAATTTGACTACAACTGCTCCACGTGCGGCAAAGGATTTCAGTGCAAGAGCTATCTCATTGTACACCAAAGAGTACACTCAGACCTGAAACCATACTCGTGCACGAAATGCAGTCAGAATTTCAAGACGAAGCAGTCACTGCTGGACCACGAGAACCGTCACCTCGGCGTGAAACCGTACATGTGCGAGATCTGCGGCCGCGGTTTCATCACTAAAGGCCTTTGCAAAAGTCATCAGAAGATACACTCCGGCACCGACAATCGCCAATATCCATGCGCGGTGTGCAACAAAATGTTCGTCAGCAAGAGTTACCTGAACACGCACTTGCGCATTCACACGGGCGAGAAGCCATATCTTTGTGAGGTCTGCGGCAAGGGATTCCTCACGCGGGTTGATCTAAGGATCCACTCGACCATGCATACCGGCGAGAAGAGCTTCAAATGCGAGATATGCGGGAAGGTGTTCGCTCGACGCGCGGCGCTACGTTGCCATCGACGGTCGCACACGGGCGAACGTCCTTACAAATGCGACGTCTGTGGCAAAACGTTCACGCAGTTCAGTCCGATGGCAATCCACAAGCGTTTACACACCGGTGAGCGACCGTATGAATGCGACGAATGCGGCAAGGCCTTCGTGTCTAGGTCGACTATGATGTCTCACAGAAAGAAGCATCACATTACGAACGCTGTACAAAAGGATGCAACTGTGACGCATAACGAAGACGCCGAGGTCAAGCTTATTCTCTCGTCCGACATCATAGTCAGAGACACAGACGATGGGATTCACGTCACTGCAGATTGA
Protein Sequence: MAVIEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAFKLDQLFDFREKCLHTEGMFMEMLKEIGKEEIVHLSEHDLASVNNMGTIQRNLTSIQINNENVQSHSAVAHETTESTIHTMQVMDEMDLAGGEQVVTQEEIGQQDADIQGIDCLDGDTVRMVDEHIREVSNHQIAMHLDSDIAVVGNLGGHLSQLGINYVTSINPEDQSQEQIVHYCENVKYEADPIKQEYHRLQDRLTTEEPQHILKNNVPVDNFVSPQAETESEIEESCINENGTHEHVDSMNLPSTSQINGVPCEIMVKYTKRTKHALLESTLNNPSIDETGSNWYMCPFCNEAAVETTNLAAHFEQHFCCCSCDLYFTSVEGLNLHKEQCDVYKTEVVNKEKKDAQLNAVSLQESSDNQEGQKKQSTVRRKWTAKVCTECGKQYKSNYKLQEHMRKHTGEKPFQCTTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTKCSQNFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLRIHSTMHTGEKSFKCEICGKVFARRAALRCHRRSHTGERPYKCDVCGKTFTQFSPMAIHKRLHTGERPYECDECGKAFVSRSTMMSHRKKHHITNAVQKDATVTHNEDAEVKLILSSDIIVRDTDDGIHVTAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01087395;
90% Identity: iTF_00385783;
80% Identity: -