Cfun010856.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- bab1
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000262.1:91011-93016[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8e-07 0.00016 21.4 0.0 2 38 215 250 214 257 0.88 2 5 1.8e-12 1.6e-09 37.4 0.0 1 38 264 300 264 303 0.95 3 5 0.00053 0.48 10.3 0.0 7 34 322 348 318 354 0.86 4 5 5.1 4.6e+03 -2.5 0.0 31 44 362 376 362 377 0.77 5 5 4.6e-12 4.2e-09 36.1 0.0 4 43 379 418 376 420 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAGGCTAACCAGGCGACACTTGGCACAGACCACACGCAGGTCGACACCTCTTACTGCTTCAAATGGGGCAATTACCAGAGTCACCTGTCCGAGGTCGTGCGCCAACTGCTGGAAGAAGAATGTATGGTCGACGTGACCCTCTACGCCGGCGGCGAACGCATACAGGCACACCGACTCGTCCTCTGCGCCTGCAGCACTCTATTCCAGGAAATTTTGAGCCAGGTTAACGATGAGCACGCTACCATTATTCTGAGCGACATATCTCCTCAAGATGTGAGGTCCATCGTTGAGTTCAGTTACAACGGAGAGGTGAGAATCCCTGTGGAGAATATCAACAATCTCCTGGATGCTGCTCATTCATTGAAGATATGTGGTTTGATGGAGATTGAAGGTCTGGATGAGTCTGAAATAGCTCAGGACAAAGATATGTGTGCTGATGATAGTTATGTCTTAAGTGAGTTTCCTGATGTTGATGAAGAAGATGAGAATATTCAGTCACAAACTTTTGAAAAGCCACAAACAGAGAAAataagcgaaaataaaagaagaatttcaacaaatgatgaagaagaagatgcgGATGGAAGTCTCAAAAAGCGAAAACGTAGAAAGAGCGTTTGCAAGAAAGAGTACAGTGATGAAATGTTAGCTGCAGCAATCAGTGACATTAAAGAGGGAAAGTCATTGTTGGAGGCAGCTATGAGACACCATATTCCCAGATCCACACTATACATGAGAGCAAAAGTTCTGGGTCTGTCTCTCAATCCATCTCGGAGTGAATATACAAATGAAGATATGAAAGGAGCCATACAGGCAGTCATAGCTGGATCTAGCTTACAACAGGCGTCTGACTGTTATGGCATTCCGAAAACAGTTTTGTGGCGAAGGATTCAGAAAGAAGGTTGTCTACCACCAAGAAaggaacaaaagaaaacatatGCAACTGACAGAAGAGAAGCTGCGGTGAAGGCATTGGAAAGAGGAGATTCTCTCACAAAAGTTGCCAATGAATACAAAATTCCAAAAACGACGCTCTTTCGAGATAAAGCTCGTTTAGTTGATCAAGGAAAATTGCCGACAACGTTCTGGAAAAAGCGAAAGACTAATGGAGAAGATATAAAACGATCTCGTTTGGAGGAAGCTGTGGCTGCTTGCAAAGATGGTAAGATGTCACAAGCTGTAGCTTCAGTTACTTATCAAATACCTAAAACTACTATATGGAGACGACTTCAAAAAGAAATGGGGAAATCCGATTCAGGTTCATCTGTAAAGAAGCAGCAAAAGAGGGTCATCCCCACTTTTCAAAAGAGCACAGAGATGGTTAAATCAGAAGAGTTACAAGAAACTGATTTTGAGGCATATTGTCCAgAGGATACAGACATGAATATAACGTACATTGATGAAAGTAACATATCAGATGATCCAGTAATAATTCTTGCTAGCAGCGATGTAGATGAGCTTAATTTACCAAATAATAGATCTTTAGTGGTGGTACATGAAggttctgaaaattttatatcatgCGGGCTGGAGTTGGATGACAATACAACTTTCgttgaaaaaagttaa
- Protein Sequence
- MSEANQATLGTDHTQVDTSYCFKWGNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIAQDKDMCADDSYVLSEFPDVDEEDENIQSQTFEKPQTEKISENKRRISTNDEEEDADGSLKKRKRRKSVCKKEYSDEMLAAAISDIKEGKSLLEAAMRHHIPRSTLYMRAKVLGLSLNPSRSEYTNEDMKGAIQAVIAGSSLQQASDCYGIPKTVLWRRIQKEGCLPPRKEQKKTYATDRREAAVKALERGDSLTKVANEYKIPKTTLFRDKARLVDQGKLPTTFWKKRKTNGEDIKRSRLEEAVAACKDGKMSQAVASVTYQIPKTTIWRRLQKEMGKSDSGSSVKKQQKRVIPTFQKSTEMVKSEELQETDFEAYCPEDTDMNITYIDESNISDDPVIILASSDVDELNLPNNRSLVVVHEGSENFISCGLELDDNTTFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01036936; iTF_01035341; iTF_01274637; iTF_01037170; iTF_01274387; iTF_01035572; iTF_00286552; iTF_00143792; iTF_00143982; iTF_01036116; iTF_01036339; iTF_01487162; iTF_01486969; iTF_00287388; iTF_00287107; iTF_01190239; iTF_01190545;
- 90% Identity
- iTF_00286552;
- 80% Identity
- iTF_00286552;