Csem020935.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- bab1
- Assembly
- GCA_900474235.1
- Location
- UCQR01013712.1:10818-12830[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-07 0.00024 21.3 0.0 2 42 216 256 215 259 0.90 2 4 3.1e-12 1.7e-09 37.7 0.0 1 38 265 301 265 304 0.95 3 4 0.001 0.55 10.5 0.0 7 34 323 349 319 355 0.91 4 4 7.2e-11 4e-08 33.4 0.0 4 41 380 417 377 420 0.92
Sequence Information
- Coding Sequence
- ATGTCTGGGGCCAACCAGGCGGCTCTTGGCACAGACCAGACGCAGGTCGACACTTCGTACTGCTTCAAATGGAGCAATTACCAGAGTCATCTGTCCGAGGTTGTACGCCAGCTGCTGGAGGAGGAATGCATGGTCGACGTGACCCTCTACGCCGGGGGCGAACGCATACAGGCGCACCGGCTAGTCCTCTGCGCCTGCAGCACTTTATTCCAAGAAATTTTGAGCCAGGTTAATGATGAGCACGCCACTATTATTCTGAGCGACATATCTCCTCAAGATGTGAGGTCCATCGTGGAGTTCAGTTACAATGGGGAGGTGAGAATCCCTGTGGAGAATATCAACAATCTCCTGGATGCTGCTCACTCATTGAAGATATGCGGTTTAATGGAGATTGAAGGTCTGGATGAATCTGAAATAGCTCAGGATAAGGACATGACTGCCGAGGATAGTTATGTCTTGAGTGAGCTTCCTCAAATTGATGACGAAGAAGATGAAAGTATGCAGTCAACAAGTTTGGAAAAACCATCTACAGAAAAAACTAGTGGAAAGAGAAGAACAATTTCAACAAatgacgaagaagaagatgtGGATGGAACTCCCAAAAAGAACAAACGTAGAAAGAGCGTCTGCAAGAAAGAGTACAGTGATGAAATGTTGGCTGCTGCTATAAATGACATTAAAGAGGGACGGTCATTATTGGAGGCAGCTGTGAAAAATCATATTCCCAGATCCACACTCTACATGAGAGCAAAAAACCTGGGTTTGACTCTCAATCCATCTCGAAGTGAATATACAAACGAAGATATGAGAGGAGCCATAGAAGCAGTCGTAGCTGGATCTAGCTTACAACAGGCATCGGACTGTTACGGTATTCCAAAAACAGTTTTGTGGCGAAGAATTCAGAAAGAAGGTTGTCTACCACCAAGACATGAACAGAAGAAAAGTTATGGATCTGACAGACGAGAAGCTGCTGTGAAGGCATTGGCAAGAGGAGATTCTCTCACAAAAGTTTCCAAGGAATACAAAATTCCAAAAACGACGCTCTTTCGAGATAAAGCTCGTTTAGTTGACCAAGGAAAATTGCCGACAACGTTTTGGAAAAAGCGAAAGACTGCTGGCGAAGATATAAAACAATCTCGTTTGGAAGAAGCTGTGTCTGCTTGTAAAGATGGTAAGATGTCGCAAGCTGTAGCTTCTGTTACTTATCAAATACCTAAAACTACTATATGGAGACGACTTCAAAAAGAAATAGGAAAATCCGATTCGGGTTCATCTGTAAAGAAACAGCAAAAGAGGATCATTCCCACTACTCAAAAGAGCCCAGAAATGGATAAATCAGAAGAGCTACAAGAAACTGATTTTGAAGCATATTGTCCGgAGGATACAGACATGAATATAACATACATTGATGAAAGTAACATATCAGATGATCCAGTAATTATTCTTGCTAGCGGCGAGGAGATTAATTTACCAAATAATAGATCCTTAGTCGTGGTACATGAAGGTACTGATGAGACTTTTATATCATGCGGGCTAGAGTTGgatgaaaatacaacttttgttgaaaaaagttAG
- Protein Sequence
- MSGANQAALGTDQTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIAQDKDMTAEDSYVLSELPQIDDEEDESMQSTSLEKPSTEKTSGKRRTISTNDEEEDVDGTPKKNKRRKSVCKKEYSDEMLAAAINDIKEGRSLLEAAVKNHIPRSTLYMRAKNLGLTLNPSRSEYTNEDMRGAIEAVVAGSSLQQASDCYGIPKTVLWRRIQKEGCLPPRHEQKKSYGSDRREAAVKALARGDSLTKVSKEYKIPKTTLFRDKARLVDQGKLPTTFWKKRKTAGEDIKQSRLEEAVSACKDGKMSQAVASVTYQIPKTTIWRRLQKEIGKSDSGSSVKKQQKRIIPTTQKSPEMDKSEELQETDFEAYCPEDTDMNITYIDESNISDDPVIILASGEEINLPNNRSLVVVHEGTDETFISCGLELDENTTFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_00287388;
- 80% Identity
- iTF_00287388;