Nvit009866.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- bab1
- Assembly
- GCA_009193385.2
- Location
- NC:15642934-15645427[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.9e-06 0.0062 15.7 0.0 2 38 212 247 211 254 0.88 2 5 2.4e-13 2.5e-10 39.4 0.0 1 38 261 297 261 300 0.95 3 5 0.00033 0.34 10.2 0.0 7 34 319 345 316 351 0.86 4 5 0.17 1.8e+02 1.5 0.0 31 45 359 374 358 374 0.93 5 5 1.1e-12 1.2e-09 37.2 0.1 4 41 376 413 373 416 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAGTCGGTTCTTGGGACAGACCAGACGCAGGTCGACACTTCGTACTGCTTCAAATGGAGCAATTATCAAAGTCACCTCTCCGAGGTTGTGCGCCAGCTGCTAGAGGAGGAATGTATGGTCGACGTGACCCTCTACGCCGGCGGCGAACGAATACAAGCACACCGGCTGGTTCTCTGTGCTTGCAGCACTCTATTCCAAGAAATTTTGAGCCAGGTTAATGATGAGCACGCCACTATTATTCTGAGCGACATATCGCCTCAAGATGTGAGGTCCATCGTAGAGTTCAGTTACAATGGAGAGGTGAGGATCCCTGTCGAAAATATCAACAATCTCCTGGACGCTGCTCATTCTTTGAAGATATGCGGTTTGATGGAGattgaAGGTTTAGATGAGTCGGAAATATCTCAGGACAAAGATATCACTGCTGATGACAGTTATGTCTTGAGCGAGTTTCCTCAAGttgatgaagaagacgagagtATTCAGTCAACAGACTTTGAAAAGTCACACACACAGAAAACTAgtgaaaacaaaagaaaaatttcaacaaatgACGAAGAGGATGAAATGGATGAGATTCTTAAAAGGCGAAAGCGTCGAAAGAGTGTTTGCAAGAAAGAGTACAGCGATGAAATGCTGGCTGCTGCAATTAGTGACATCAAGGAGGGGCGATCATTGTTGGAGGCAGCTATGAGAAATCATATTCCCAGATCCACACTTTACATGAGGGCAAAAGTTCTGGGTCTCACTCTCAATCCAGCTCGAAGTGAATACACAAACGAAGATATGCAAGGAGCTATACAAGCAGTCATGGCTGGATCTAGCTTACAACAGGCATCTGACTGTTATGGTATTCCGAAAACAGTTTTGTGGCGAAGAATTCAAAAAGAAGGCTGTATACCACCTagacacgaaaaaaaaaacagttatgCAGCTGACAGAAGAGAAGCTGCTGTAAAAGCATTAGAAAGAGGAGATTCTCTCACAAAAGTTGCCAATGAATACAAAATTCCAAAAACAACGCTTTTTCGAGATAAAGCTCGTTTAGTTGACCAAGGAAAATTGCCGTCGACATTTTGGAAAAAACGAAAGAGTGATGGCGAAGAGCTAAAACGATCTCGTTTGGAAGAAGCTGTGGCTGCTTGTAAAGAGGGTAAGATGTCGCAAGCTGTAGCTTCAGTTACATATCAAATACCTAAAACTACTATATGGAGACGACTTCAAAAAGAAATAGGAAAATCAGATTCAGGTTCATCTGTGAAAAAACAGCAAAAGAGGGCCCTTTCCACTACACTAAAGAGCGCAGAAATCGTCAAATCACAAGAGTTACAAGAAACTGATTTTGAAGCATATTGTCCGgAGGATACAGACATGAATATAACATACATtgatgaaagtaacatgacaGATGATCCAGTAATAATTCTTGCTAGCGGCGATGTAGATGAACTTAATTTGCCAAATAATAGATCTTTAGTTGTGGTACATGAAGGTACTGACGATAATTTTATATCATGTGGGCTAGAGTTAGATGAAAATACAACTTTTgttgaaaaaagttaa
- Protein Sequence
- MSESVLGTDQTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEISQDKDITADDSYVLSEFPQVDEEDESIQSTDFEKSHTQKTSENKRKISTNDEEDEMDEILKRRKRRKSVCKKEYSDEMLAAAISDIKEGRSLLEAAMRNHIPRSTLYMRAKVLGLTLNPARSEYTNEDMQGAIQAVMAGSSLQQASDCYGIPKTVLWRRIQKEGCIPPRHEKKNSYAADRREAAVKALERGDSLTKVANEYKIPKTTLFRDKARLVDQGKLPSTFWKKRKSDGEELKRSRLEEAVAACKEGKMSQAVASVTYQIPKTTIWRRLQKEIGKSDSGSSVKKQQKRALSTTLKSAEIVKSQELQETDFEAYCPEDTDMNITYIDESNMTDDPVIILASGDVDELNLPNNRSLVVVHEGTDDNFISCGLELDENTTFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_01035572;
- 80% Identity
- iTF_01037170;