Ppup003100.1
Basic Information
- Insect
- Pteromalus puparum
- Gene Symbol
- bab1
- Assembly
- GCA_012977825.2
- Location
- Scaffold:297752-299741[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.6e-06 0.0027 17.3 0.0 2 38 212 247 211 254 0.88 2 5 3.4e-13 3.5e-10 39.4 0.0 1 38 261 297 261 300 0.95 3 5 0.00045 0.47 10.2 0.0 7 34 319 345 315 350 0.87 4 5 0.24 2.5e+02 1.5 0.0 31 45 359 374 358 374 0.93 5 5 1.6e-12 1.7e-09 37.2 0.1 4 41 376 413 373 416 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAGTCGGGTCTTGGGACAGACCAGACGCAGGTCGACACTTCGTACTGCTTCAAATGGAGCAATTACCAGAGTCACCTGTCCGAGGTAGTGCGCCAGCTGCTGGAGGAGGAATGTATGGTCGACGTGACCCTCTACGCCGGTGGCGAACGCATACAGGCGCACCGGCTCGTCCTCTGCGCCTGCAGCTCTCTATTCCAAGAAATTTTGAGCCAGGTTAATGATGAGCATGCCACTATTATTTTGAGTGACATATCTCCTCAAGATGTGAGATCCATCGTGGAGTTCAGTTACAATGGAGAGGTGAGGATCCCTGTGGAGAATATCAACAATCTCTTGGACGCTGCTCATTCTTTGAAGATATGCGGTTTGATGGAGATTGAAGGTTTGGACGAGTCGGAAATATCTCAGGATAAGGACATGACCGCTGATGACAGTTATGTATTGAGTGAGTTTCCTCAAGTTGAAGAAGATGATGAGAGTATTCAGTCGACTGGTTTTGAGAAGTCACAAACAGAGAAAACTAGTGAAAACAAAAGAAAAATTTCAACAAACGATGAAGAGGAAGAGTTGGATGGGATTCTTAAAAAGCGAAAGCGGAGAAGGAGCGTTTGCAAGAAAGAGTACAGCGATGAAATGTTGGCTACTGCAATTAATGACATCAAAGAGGGATGCTCATTGTTGGAGGCAGCTATGAAAAATCATATTCCCAGATCTACACTCTACATGAGAGCAAAAGTGCTGGGTCTAACTCTCAATCCATCTCGAAGTGAATACACAAACGAAGATATGCAAGGGGCCATACAAGCAGTCATGGCTGGATCTAGCTTACAACAGGCATCTGACTGTTACGGTATTCCAAAAACAGTTTTGTGGCGAAGAATTCAGAAAGAAGGCTGTGTACCACCTCGACATGAACAAAAAAAAAGTTATGCAGCTGAGAAAAGAGAAGCTGCTGTAAAAGCATTGGAAAGAGGAGATTCCCTCACAAAAGTTGCCAATGAATACAAAATTCCAAAAACGACGCTCTTTCGAGATAAAGTTCGTTTAGTTGACCAAGGAAAATTACCGTCGACGTTTTGGAAAAAGCGAAAGAGTGATGGCGAAGAGCTCAAACGATCTCGTTTGGAAGAAGCTGTGGCTGCTTGTAAAGAGGGTAAGATGTCGCAAGCTGTTGCTTCAGTTACTTATCAAATACCTAAAACTACTATATGGAGACGACTTCAAAAAGAAATAGGAAAATCCGATTCAGGTTCATCTGTAAGGAAACAGCCAAAGAGGAACCATTCCACTACTCAAAAGAATGAAGAAATGGATAAATCACAAGAGTTACAAGAAACTGATTTTGAAGCATATTGTCCGGAGGATACAGACATGAATATAACATACATTGATGAAAGTAACATATCAGATGATCAAGTAATAATTCTTGCTAGCGGCGATGTGGATGAGCTTAATTTACCAAATAATAGATCTTTAGTCGTGGTACATGAAGGTACTGATGATAATTTTATATCATGCGGGCTAGAGTTAGATGAAAATACAACTTTAGTTGACAAAAGTTAA
- Protein Sequence
- MSESGLGTDQTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSSLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEISQDKDMTADDSYVLSEFPQVEEDDESIQSTGFEKSQTEKTSENKRKISTNDEEEELDGILKKRKRRRSVCKKEYSDEMLATAINDIKEGCSLLEAAMKNHIPRSTLYMRAKVLGLTLNPSRSEYTNEDMQGAIQAVMAGSSLQQASDCYGIPKTVLWRRIQKEGCVPPRHEQKKSYAAEKREAAVKALERGDSLTKVANEYKIPKTTLFRDKVRLVDQGKLPSTFWKKRKSDGEELKRSRLEEAVAACKEGKMSQAVASVTYQIPKTTIWRRLQKEIGKSDSGSSVRKQPKRNHSTTQKNEEMDKSQELQETDFEAYCPEDTDMNITYIDESNISDDQVIILASGDVDELNLPNNRSLVVVHEGTDDNFISCGLELDENTTLVDKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_01035572;
- 80% Identity
- iTF_01274637;