Tsar009622.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- bab1
- Assembly
- GCA_002249905.1
- Location
- NNAY01002380.1:16895-18998[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-06 0.003 17.0 0.1 2 38 212 247 211 253 0.90 2 4 0.00024 0.41 10.2 0.0 7 34 306 332 303 338 0.86 3 4 0.12 2.1e+02 1.5 0.0 31 45 346 361 345 361 0.93 4 4 8e-13 1.4e-09 37.3 0.1 4 41 363 400 360 403 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAGTCGGTTCTTGGGACAGACCAGACGCAGGTCGACACTTCGTACTGCTTCAAATGGAGCAATTATCAAAGTCACCTCTCCGAGGTTGTGCGCCAGCTGCTAGAGGAGGAATGTATGGTCGACGTGACCCTCTACGCCGGCGGCGAACGAATACAAGCACACCGGCTGGTTCTCTGTGCTTGCAGCACTCTATTCCAAGAAATTTTGAGCCAGGTTAATGATGAGCACGCCACTATTATTCTGAGCGACATATCGCCTCAAGATGTGAGGTCCATCGTAGAGTTCAGTTACAATGGAGAGGTGAGGATCCCTGTCGAGAATATTAACAATCTCCTGGATGCTGCTCATTCTTTGAAGATATGCGGTTTGATGGAGattGAAGGTTTAGACGAGTCGGAAATATCTCAGGACAAAGATATCACTGCTGATGACAGTTATGTCTTGAGTGAGTTTCCTCAAGTTGACGAAGAGGACGAGAGTATTCAGTCAACAGACTTTGAAAAGTCACACGCACAGAAAACTagtgaaaacaaaagaaaaatttcaacaaatGACGAAGAGGAGGAAATGGATGAGATTCTTAAAAGGCGAAAGCGTCGAAAGAGTGTTTGCAAGAAAGAGTACAGCGATGAAATGCTGGCTGCTGCAATTAGTGACATCAAGGAGGGGCGATCATTGTTGGAGGCAGCTATAAGAAATCATATTCCCAGATCCACACTTTATATGAGGGCAAAAGTTCTGGTGAATACACAAACGAAGATATGCAAGGAGCTATACAAGCAGTCATGGCTGGATCTAGCTTACAACAGGCATCTGACTGTTATGTTTTGTGGCgaagaattcaaaaagaaGGCTGTATACCACCTagacacgaaaaaaaaaaacagttatgcAGCTGACAGAAGAGAAGCTGCTGTAAAAGCATTAGAAAGAGGAGATTCTCTCACAAAAGTTGCCAATGAATACAAAaTTCCAAAAACAACGCTTTTTCGAGATAAAGCTCGTTTAGTTGACCAAGGAAAATTGCCGTCCACATTTTGGAAAAAACGAAAGAGTGATGGCGAAGAGCTAAAACGATCTCGTTTGGAAGAAGCTGTGGCTGCTTGTAAAGAGGGTAAGATGTCGCAAGCTGTAGCTTCAGTTACATATCAAATACCTAAAACTACTATATGGAGACGACTTCAAAAGGAAGTAGGAAAATCAGATTCAGGTTCATCTgtgaaaaaacaacaaaagaGGGCCCTTTCCACTGCACAAAAGAGCGCAGAAATCATCAAGTCACAAGAGTTACAAGAAACTGATTTTGAAGCATATTGTCCGgAGGATACAGACATGAATATAACATACATTGATGAAAGTAACATGACAGATGATCCAGTAATAATTCTTGCTAGCGGCGATGTAGATGAACTTAATTTGCCAAATAATAGATCTTTAGTTGTGGTGCATGAAGGTACTGACGATAATTTTATATCATGTGGGCTAGAGTTAGATGAAAATACAacttttgttgaaaaaagttaa
- Protein Sequence
- MSESVLGTDQTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEISQDKDITADDSYVLSEFPQVDEEDESIQSTDFEKSHAQKTSENKRKISTNDEEEEMDEILKRRKRRKSVCKKEYSDEMLAAAISDIKEGRSLLEAAIRNHIPRSTLYMRAKVLVNTQTKICKELYKQSWLDLAYNRHLTVMFCGEEFKKKAVYHLDTKKKNSYAADRREAAVKALERGDSLTKVANEYKIPKTTLFRDKARLVDQGKLPSTFWKKRKSDGEELKRSRLEEAVAACKEGKMSQAVASVTYQIPKTTIWRRLQKEVGKSDSGSSVKKQQKRALSTAQKSAEIIKSQELQETDFEAYCPEDTDMNITYIDESNMTDDPVIILASGDVDELNLPNNRSLVVVHEGTDDNFISCGLELDENTTFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_01487162;
- 80% Identity
- iTF_01487162;