Abak010382.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- lov
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000003.1:6580424-6582383[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.5e-07 0.00094 18.6 0.0 2 38 215 250 214 257 0.88 2 5 6.3e-14 1.1e-10 40.8 0.0 1 38 264 300 264 303 0.95 3 5 0.00025 0.43 10.1 0.0 7 34 322 348 320 354 0.84 4 5 0.64 1.1e+03 -0.8 0.0 31 45 362 377 362 377 0.89 5 5 6.9e-13 1.2e-09 37.5 0.0 4 39 379 414 376 418 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAGGCCGACCAGACCGCTCTGGGAACAGATCAGTCGCAAGTCGACACTTCCTACTGTTTCAAATGGAGCAATTATCAGAATCACTTGTCCGAGGTCGTGCGCCAGCTGCTCGAGGAGGAATGCATGGTCGACGTTACCCTCTACGCCGGCGGCGAACGCATACAGGCTCATCGTCTCGTACTCTGTGCTTGCAGCACTCTATTTCAAGAAATTTTGAGCCAGGTTAACGATGAGCATGCCACTATTATACTCAGTGACATTTCTCCGCAAGATGTGAGATCTATCGTAGAGTTCAGCTACAATGGGGAGGTACGGATTCCCGTGGAGAATATCAATAATCTCTTGGATGCTGCCCACTCGTTGAAGATATGTGGTTTGATGGAGATCGAAGGTCTGGACGAGTCTGAAATTGCTCAGGATAAGGATATGACTGCCGATGAATCCTATGTTTTAAATGAGTTTTCTAATATAGATGATGAGAATGAGAGTACGCTCTCAACTAGTTTAGAACAATCAAGTGTAGAGAAAGTAAGCGAAAACAAAAGAAAACTATCAACAAATGACGAGGAGGAAGATATAGATGGAATACTTAAGAAACGTAAACGTAGAAAGAGTGTTTGTAAAAAAGAATACAGTGATGAAATGTTGGCTGCCGCAATAAATGACATAAAAGAAGGGAGATCATTGTTAGAGGCAGCCGTAAGAAATCACATTCCTAGGTCCACGCTCTATATGAGGGCAAAAGTTCTAGGTCTGTCTCTTAATCCATCTCGAAGTGAATATACAAATGAAGATATGAGAGCGGCTATTCAAGCAGTTGTTGCTGGATCGAGTCTTCAGCAAGCTTCCGACTGTTATGGAATTCCAAAAACTGTTTTGTGGAGAAGGATTCAGAAAGAAGGCTGTTTACCACCACGTCAAGAACAAAAGAAAAGTTATGCAGCCGATAGAAGAGAAGCCGCTGTGAGGGCATTGGAAAGAGGAGATTCTCTCACAAAAGTTGCTAATGAATACAAAATTCCAAAAACAACTCTATTTCGAGATAAAGCACGCTTAGTTGACCAAGGAAAATTGCCAACAACATTTTGGAAAAAGCGAAAATCCGATGATGAAGAACTGAAACGATCTCGTTTGGAAGAAGCTGTTGCTGCTTGTAAGGATGGTAAAATGTCACAAGCAGTAGCTTCAGTTACTTATAATATTCCTAAAACTACAATATGGAGACGGCTTCAAAAAGAAGTAGGAAAAGTTGAATCTGGATCACTTGTAAAAAAACAGTCAAAAAGAACATCAACTACGCAAAAGAGTAAAGAAATGATCAAATCAGAAGAGTTACAAGAAACTGATTTTGAAGCATATTGTCCGGAGGATACCGACATGAATATAACTTACATAGATGAAAGTAACATATCAGATGATCCAGTAATCATTCTGGCTAGTGGAAATGTAGATGAATTAAATTTACCAAATAATAGATCTTTAGTAGTGGTGCATGAAGGTAGCGAAGATAATTTTATATCATGTGGACTAGAATTAGATGAAAACAGTGCTTTTGTTGAAAAAAGTTAA
- Protein Sequence
- MSEADQTALGTDQSQVDTSYCFKWSNYQNHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIAQDKDMTADESYVLNEFSNIDDENESTLSTSLEQSSVEKVSENKRKLSTNDEEEDIDGILKKRKRRKSVCKKEYSDEMLAAAINDIKEGRSLLEAAVRNHIPRSTLYMRAKVLGLSLNPSRSEYTNEDMRAAIQAVVAGSSLQQASDCYGIPKTVLWRRIQKEGCLPPRQEQKKSYAADRREAAVRALERGDSLTKVANEYKIPKTTLFRDKARLVDQGKLPTTFWKKRKSDDEELKRSRLEEAVAACKDGKMSQAVASVTYNIPKTTIWRRLQKEVGKVESGSLVKKQSKRTSTTQKSKEMIKSEELQETDFEAYCPEDTDMNITYIDESNISDDPVIILASGNVDELNLPNNRSLVVVHEGSEDNFISCGLELDENSAFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_00143982;
- 80% Identity
- iTF_00143982;