Ptri011152.1
Basic Information
- Insect
- Philotrypesis tridentata
- Gene Symbol
- bab1
- Assembly
- GCA_018906965.1
- Location
- JACCIB010000002.1:8354043-8356032[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.4e-06 0.0041 17.8 0.0 2 38 213 248 212 255 0.88 2 5 2.8e-11 4.7e-08 33.6 0.0 2 38 263 298 262 301 0.93 3 5 0.00012 0.2 12.4 0.0 6 34 319 346 316 352 0.91 4 5 0.51 8.6e+02 0.8 0.0 31 45 360 375 359 375 0.93 5 5 1.2e-12 2.1e-09 38.0 0.0 4 39 377 412 374 416 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAGGCCAGCCAGACCGCTCTGGGAACAGATCAGTCCCAAGTCGACACCTCCTACTGCTTCAAATGGAGCAATTACCAGAGCCACTTGTCCGAGGTCGTGCGCCAGCTGCTCGACGAGGAATGCATGGTCGACGTGACGCTCTACGCCGGCGGCGAGCGCATACAGGCGCACCGGCTCGTCCTCTGCGCCTGCAGCACTTTGTTTCAGGAGATTTTGAGCCAGGTTAACGACGAGCACGCCACCATAATACTGAGCGACATATCGCCCCAGGATGTCAGGTCCATCGTAGAGTTCAGCTACAACGGGGAGGTGAGGATACCTGTGGAAAATATCAATAATCTCTTGGATGCTGCTCATTCGCTGAAGATATGTGGCTTGATGGAGATTGAAGGCTTGGACGAGTCCGAAATAGCACAGGATAAGGATATCATTGCCGATGACAGCTATGCCTTGAATGACTTTTCTAATCCAGATGAAGAAAACGAGAGTTTAAAGTCAGTAGGTATTGAAAACTCGCCAAAAGATAAGAGCAATGAAAATAAAAGAAAAATATCGACTAATGATGAAGAGGAAGATGTGGATGTTAAAAAGCGCAAGCGCAGAAAGAGTGTTTGTAAGAAAGAGTACAGCGATGAAATGTTGAATGCTGCAATAAATGACATCAAAGAGGGGCGGTCACTGTTGGAAGCAGCTGTGAGAAATCATATTCCTAGATCCACACTCTATATGAGAGCAAAAGTACTAGGTCTGTCTCTCAATCCATCTCGAAGTGAATACACAGCTGAGGATATGAAAGGAGCGATACAAGCAGTTATAGCTGGGTCAAGCCTTCAACAAGCCTCAGACTGTTTTGGAATTCCAAAAACTGTTTTATGGAGAAGGATTCAGAAGGAAGGTTGTATACCACCTCGGCAAGAACAAAAGAAGAGTTATGCGGCTGACAAAAGAGAAGCTGCTGTGAAGGCATTGGCAAGAGGAGATTCTCTCACAAAAGTTGCTAATGAATACAAAATCCCAAAAACCACTCTATTTCGCGATAAAGCTCGATTAGTTGATCAAGGAAAATTGCCAACAACCTTTTGGAAAAAGCGAAAGTCCGATGGTGAAGAACTAAAACGATCTCGTTTGGAAGAAGCTGTTACTGCTTGCAAGGAGGGTAAAATGTCACAAGCTGTAGCTTCAGTCACTTACAACATACCAAAAACTACTATTTGGAGACGCCTTCAAAAAGAAATAGGTAAAGTTGATTCTGGATCTGTCACGAAGAAACAGCAAAAGAAAATTCTACCAACTACTCAAAAGAGTGCAGAAGCAGTTAAATCAGAAGACTTACAAGAAACTGATTTTGAAGCATATTGTCCAGAGGACACTGATATGAACATAACTTACATTGATGAAAGTAACATATCGGATGATCCAGTAATAATTCTCGCAGCTAGCAGTGTAGATGAACTTAATTTACCAAATAATAGATCTTTAGTTGTAGTACATGAAGGCACTGACGAGAATTTCATATCGTGTGGACTGGAGTTAGATGAAAATAATACTTTTGTTGAAAAAAGTTAG
- Protein Sequence
- MSEASQTALGTDQSQVDTSYCFKWSNYQSHLSEVVRQLLDEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIAQDKDIIADDSYALNDFSNPDEENESLKSVGIENSPKDKSNENKRKISTNDEEEDVDVKKRKRRKSVCKKEYSDEMLNAAINDIKEGRSLLEAAVRNHIPRSTLYMRAKVLGLSLNPSRSEYTAEDMKGAIQAVIAGSSLQQASDCFGIPKTVLWRRIQKEGCIPPRQEQKKSYAADKREAAVKALARGDSLTKVANEYKIPKTTLFRDKARLVDQGKLPTTFWKKRKSDGEELKRSRLEEAVTACKEGKMSQAVASVTYNIPKTTIWRRLQKEIGKVDSGSVTKKQQKKILPTTQKSAEAVKSEDLQETDFEAYCPEDTDMNITYIDESNISDDPVIILAASSVDELNLPNNRSLVVVHEGTDENFISCGLELDENNTFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_01190545;
- 80% Identity
- iTF_01190545;