Nlon005310.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- bab1
- Assembly
- GCA_000004795.1
- Location
- GL277996.1:600222-602231[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.5e-06 0.0079 15.7 0.0 2 38 214 249 213 256 0.88 2 5 3.4e-13 3.2e-10 39.4 0.0 1 38 263 299 263 302 0.95 3 5 0.00046 0.43 10.2 0.0 7 34 321 347 318 353 0.86 4 5 0.24 2.3e+02 1.4 0.0 31 45 361 376 360 376 0.93 5 5 1.6e-12 1.5e-09 37.2 0.1 4 41 378 415 375 418 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAGTCGGTTCTTGGGACAGACCAGACGCAGGTCGACACTTCGTACTGCTTCAAATGGAGCAATTATCAAAGTCACCTCTCCGAGGTTGTGCGCCAGCTGCTAGAGGAGGAATGTATGGTCGACGTGACCCTCTACGCCGGCGGCGAACGAATACAAGCACACCGGCTGGTTCTCTGTGCTTGCAGCACTCTATTCCAAGAAATTTTGAGCCAGGTTAATGATGAGCACGCCACTATTATTCTGAGCGACATATCGCCTCAAGATGTGAGGTCCATCGTAGAGTTCAGTTACAATGGAGAGGTGAGGATCCCTGTCGAGAATATCAACAATCTCCTGGACGCTGCTCATTCTTTGAAGATATGCGGTTTGATGGAGGTATGTATAGACAGTTTAGACGAGTCGGAAATATCTCAGGACAAAGATATCACTGCTGATGACAGTTATGTCTTGAGTGAGTTTCCTCAAGTtgatgaagaagacgagagtATTCAGTCAACAGACTTTGAAAAGTCAGACACACAGAAAACTAgtgaaaacaaaagaaaaatttcaacaaatgaCGAAGAGGAGGAAATGGATGAGATTCTTAAAAGGCGAAAGCGTCGAAAGAGTGTTTGCAAGAAAGAGTACAGCGATGAAATGCTGGCTGCTGCAATTAGTGACATCAAGGAAGGGCGATCATTGTTGGAGGCAGCTATGAGAAATCATATTCCCAGATCCACACTTTACATGAGGGCAAAAGTTCTGGGTCTCACTCTCAATCCAGCTCGAAGTGAATACACAAACGAAGATATGCAAGGAGCTATACAAGCAGTCATGGCTGGATCTAGCTTACAACAGGCATCTGATTGTTATGGTATTCCGAAAACAGTTTTGTGGCGAAGAATTCAAAAAGAAGGCTGTATACCACCTagacatgaaaaaaaaaacagttatgCAGCTGACCGAAGAGAAGCTGCTGTAAAAGCATTAGAAAGGGGAGATTCTCTCACAAAAGTTGCCAATGAATACAAAATTCCAAAAACAACGCTTTTTCGAGATAAAGCTCGTTTAGTTGACCAAGGAAAATTGCCGTCGACATTTTGGAAAAAACGAAAGAGTGATGGCGAAGAGCTAAAACGATCTCGTTTGGAAGAAGCTGTGGCTGCTTGTAAAGAGGGTAAGATGTCGCAAGCTGTAGCTTCAGTTACATATCAAATACCTAAAACTACTATATGGAGACGACTTCAAAAAGAAATAGGAAAATCAGATTCAGGTTCATCTGTGAAAAAACAGCAAAAGAAGGCCCTTTCCACTACACAAAAGAGCTCAGAAATCGTCAAATCACAAGAGTTACAAGAAACTGATTTTGAAGCATATTGTCCGgAGGATACAGACATGAATATAACATACATTGATGAAAGTAACATGACAGATGATCCAGTAATAATTCTTGCTAGCGGCGATGTAGATGAACTTAATTTGCCAAATAATAGATCTTTAGTTGTGGTACATGAAGGTACTGACGATAATTTTATATCATGTGGGCTAGAGTTAGATGAAAATACaacttttgttgaaaaaagttaa
- Protein Sequence
- MSESVLGTDQTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNDEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEVCIDSLDESEISQDKDITADDSYVLSEFPQVDEEDESIQSTDFEKSDTQKTSENKRKISTNDEEEEMDEILKRRKRRKSVCKKEYSDEMLAAAISDIKEGRSLLEAAMRNHIPRSTLYMRAKVLGLTLNPARSEYTNEDMQGAIQAVMAGSSLQQASDCYGIPKTVLWRRIQKEGCIPPRHEKKNSYAADRREAAVKALERGDSLTKVANEYKIPKTTLFRDKARLVDQGKLPSTFWKKRKSDGEELKRSRLEEAVAACKEGKMSQAVASVTYQIPKTTIWRRLQKEIGKSDSGSSVKKQQKKALSTTQKSSEIVKSQELQETDFEAYCPEDTDMNITYIDESNMTDDPVIILASGDVDELNLPNNRSLVVVHEGTDDNFISCGLELDENTTFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286242;
- 90% Identity
- iTF_01035572;
- 80% Identity
- iTF_01036339;