Ckad011372.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Caradrina kadenii
Gene Symbol
-
Assembly
GCA_947462355.1
Location
OX381701.1:5945984-5951243[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.4e-06 0.00014 22.2 2.2 1 23 13 35 13 35 0.98
2 20 0.93 54 4.6 1.8 6 23 46 63 44 63 0.95
3 20 5.1e-06 0.0003 21.1 1.7 2 21 194 213 193 214 0.94
4 20 8.2 4.7e+02 1.6 1.0 3 23 220 240 219 240 0.87
5 20 0.0032 0.19 12.3 0.1 1 23 245 268 245 268 0.96
6 20 0.00029 0.017 15.6 4.0 1 23 273 295 273 295 0.96
7 20 5.9 3.4e+02 2.1 4.6 1 21 298 318 298 319 0.94
8 20 5.1e-05 0.0029 18.0 1.1 1 23 333 356 333 356 0.95
9 20 4.7e-05 0.0027 18.1 1.8 1 23 362 384 362 384 0.98
10 20 0.045 2.6 8.7 1.3 1 23 418 441 418 441 0.95
11 20 0.0022 0.12 12.9 1.6 2 22 567 587 566 590 0.89
12 20 0.1 5.9 7.6 0.0 3 23 594 615 593 615 0.95
13 20 0.014 0.83 10.3 1.1 1 23 620 643 620 643 0.94
14 20 8.3e-05 0.0048 17.3 1.7 2 23 649 670 648 670 0.96
15 20 0.89 51 4.7 1.4 2 21 674 693 674 694 0.91
16 20 3e-06 0.00018 21.8 1.2 1 23 720 743 720 743 0.95
17 20 8.8e-05 0.0051 17.3 0.2 1 23 749 771 749 771 0.95
18 20 0.068 3.9 8.2 0.1 1 23 777 799 777 799 0.97
19 20 0.0036 0.21 12.2 0.3 1 23 805 828 805 828 0.94
20 20 0.00011 0.0063 17.0 0.8 2 23 835 857 834 857 0.95

Sequence Information

Coding Sequence
ATGCATATCAAGTTGCAACACACCACTGGATGGGTCTTCCAATGTGAGAAGTGTGGGAAGAAGTTCTCAAGCCGCGCGCATTTGATTGAACATGAAACTACACACGATAAGATTATAGATCGATATGTGTGCTTCTGCTCTGCTAAGTACAGCTCAAGAAGGGGGTACGAGAGACATTTGAAAAAGCATGCTGATGCGAAAAAGATGAGGCCTGTTAAAGGAAAGGTCCTCAAACCCTCAGTTACGGCAGAAATGGAGTTGGACCCAGCGCTCCCCTGCGGCTTATGCCGGAGCTGTTCCGACGACACCCTCGCTGCCATATCGTTCACAAACCTTTGTGCGCAGTCGGCACACCACTGGGCAGACGGATCCAACTACATCTCCCAAGTCTATCCACCTACAGAAGACGACAAAGCCTACTTCATTTTCTATAACGAACAAAAAACTATAGTTAAAGACCAAATCGCTAGGGTCCCCACAGTAAAAGATGCAGTAGACAGACTTAATATGAAGTATCCTGTGAAATCTGAGAAAACACGAAAGCCCAGACGTTCTCAAGGCTTGATAAAAGAGTCCTGCAAATGTCCTAATTGTGGGAAGAAATTCTCGACACCCGATTATTTGAACTACCATCTGAGGAACACGCTCACGAGAGCTTGTCGACGATGCCGGATAGTAGTTCAGAAAAAGAAATTAGTGAAACATCTGTTAAAAAATCATAATGTGCATTTATTTGAGTGTAACGTTTGCAATAAATTGTTTGATGAGGAAGAGGATATGAAGCAGCATGTCAGAGAAGCTCACGGGAAGAATTCCCACACTTGCAGTCATTGTGGAAAAAGTTATATAAACGAGAGGGCTTTGAGAGCTCACGCTCATTCCCACTCTCTATTCCATTGCACTTCCTGTAATATGAGTTATGATAACATCAAATGCTTTAAGTACCACCAGCAAATATGCGAATACATCTACAGACCGACTGTCGAATTCAAATTCTTTACTTGCGATCACTGCGGCGTCACTTACAACCGCAAACCGTCTCTCAGAATACACATCATACAAAAGCATCTAAACGTTCTGCCTTACGTGTGTCAGACTTGCGGAAAACGGACTTCCACTTTAGCTCATTTGAAGTCTCACGAGAAAATCCATAAAACTGAACGGAAAGTCTTCCAGTGCTGCTGTGGGGCTCAATTGACAACGGAACTAGGATTTCAGTTACACCAGAGGATCCACACTGGCGAAAGACCCTACAAATGTGAACAGTGTGGGGAGAGGTTCCTCTCGTCTTCTAGAAGACTAGATCATATAAAAAGACGCCACAGAGGAGCAAAGGACTTCAAGCATGCTTGTGACCAGTGTTCAGCGCGGTTTATGACAGAAGAATCTTTAATACCAGTAGGTGCGTGTGTCGCCTGCGCCAGCACAGCCCTCGCCGCGCAGGAATTCCGCCTTTTCGTCAGGAGTTCAGTGAAATTATGGCGGAAGGCACTCGTTAATCTCTCTACTTTACCAAATTCTGCTGCTCCTCCCGTCAAATCTGTCTGCGCGTTCGTAAAAACATCAGACCTCTCCATTCAAACATTTAAAGACTACAACACAAGTGACGCCAAAACTATTCTAAATCGATTAAAAAATCGAGTCACGAAAAAACCAGTCGATAGGAAACCTAGAGGAGCGCGCACTGGGCCGTCTTGCAGCTGCCCTGACTGTAGAAAAAGCTTCCTAAGTCCGTACTACTTAAATATGCACTTGCGGAACAGTGGACATAAGGAGGCATGTCTAATTTGTGGTTCCGTGTTCGTTAGAGGCAAAGAAATGCAAGAACATCTGTCATCGGTACATAATGAGATTGTATTCTTGTGTAAAAAATGTCCTATCTTATGTCCAAATGAAGCACAGTTGAAAAAACACGTGAAAAAAGCGCACAAAACTGGGGCTCTAACGTGCACAGATTGTGGTAGAACGTTCCCTAGACATGCTTCCTTTGAAACCCATTCGCAAATGCATGCAGTGAGGACGTGTCGCGCGTGTGGTGTACAGTTTACCAACCGAGGCTGCTATAGAGAACATAGATCTCGATGCGAACCTGACGCGAAGCCTAACGCTCAAAATATGCCTAGAAATCGACGTTCCAACATCCGCGACCCAGCAACCTTCACATGCGACCATTGTGGCAAGACCTACAACTCCAGACCCCAACTCAAAAACCACATACTCTGGATCCACATGGACATACGACCTCATCAGTGCCCATGGTGCGGAAAAAGGTTTTATACCCCCGCGCGACTGGCTGAACATACCGTTGTCCATACCCGCGTTCGAAATTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCTAAGATGGCCGCCGTTTACCATAGACGGAGACATACGGGTGAGAGGCCTTATGAATGTGAAGATTGTGGGGAAAAGTTTATTTCTGCGTCGCGTAGGTCGGAGCATGCTAAGCGGAGGCATAATAAAGGATACAGGTTACCTTGTTTGAAATGCCCTGCTAATTTTGTTAGAAAACATGAGTTGAAAAAGCATATGGAAAAGGCGCATAAGGGGCCCGAGAACACTTTAGTATGGCCCCAATGA
Protein Sequence
MHIKLQHTTGWVFQCEKCGKKFSSRAHLIEHETTHDKIIDRYVCFCSAKYSSRRGYERHLKKHADAKKMRPVKGKVLKPSVTAEMELDPALPCGLCRSCSDDTLAAISFTNLCAQSAHHWADGSNYISQVYPPTEDDKAYFIFYNEQKTIVKDQIARVPTVKDAVDRLNMKYPVKSEKTRKPRRSQGLIKESCKCPNCGKKFSTPDYLNYHLRNTLTRACRRCRIVVQKKKLVKHLLKNHNVHLFECNVCNKLFDEEEDMKQHVREAHGKNSHTCSHCGKSYINERALRAHAHSHSLFHCTSCNMSYDNIKCFKYHQQICEYIYRPTVEFKFFTCDHCGVTYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLKSHEKIHKTERKVFQCCCGAQLTTELGFQLHQRIHTGERPYKCEQCGERFLSSSRRLDHIKRRHRGAKDFKHACDQCSARFMTEESLIPVGACVACASTALAAQEFRLFVRSSVKLWRKALVNLSTLPNSAAPPVKSVCAFVKTSDLSIQTFKDYNTSDAKTILNRLKNRVTKKPVDRKPRGARTGPSCSCPDCRKSFLSPYYLNMHLRNSGHKEACLICGSVFVRGKEMQEHLSSVHNEIVFLCKKCPILCPNEAQLKKHVKKAHKTGALTCTDCGRTFPRHASFETHSQMHAVRTCRACGVQFTNRGCYREHRSRCEPDAKPNAQNMPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDIRPHQCPWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCLKCPANFVRKHELKKHMEKAHKGPENTLVWPQ