Dmen048290.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- pacC
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:11733246-11737281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.8e-06 0.00053 21.9 1.3 2 21 109 128 108 129 0.94 2 19 0.76 1.1e+02 5.2 0.8 3 23 135 155 134 155 0.94 3 19 0.028 3.9 9.7 3.6 1 23 160 183 160 183 0.87 4 19 0.00094 0.13 14.3 4.6 1 23 188 210 188 210 0.96 5 19 6.8 9.5e+02 2.2 4.5 1 21 213 233 213 234 0.94 6 19 5.8e-05 0.0081 18.2 1.1 1 23 248 271 248 271 0.95 7 19 5e-05 0.007 18.4 1.8 1 23 277 299 277 299 0.98 8 19 6.5 9.1e+02 2.3 0.1 5 23 309 327 307 327 0.92 9 19 2.8 3.9e+02 3.4 3.3 1 23 333 356 333 356 0.90 10 19 0.0012 0.17 14.0 1.2 2 22 481 501 480 504 0.90 11 19 0.2 27 7.1 0.1 3 23 508 529 507 529 0.95 12 19 0.016 2.2 10.5 1.1 1 23 534 557 534 557 0.94 13 19 0.1 14 8.0 2.9 2 23 563 584 562 584 0.90 14 19 0.89 1.2e+02 5.0 0.8 2 20 588 606 588 608 0.92 15 19 2.3e-06 0.00032 22.6 0.3 1 23 634 657 634 657 0.95 16 19 0.00027 0.037 16.1 0.3 1 23 663 685 663 685 0.95 17 19 0.078 11 8.3 0.1 1 23 691 713 691 713 0.97 18 19 0.015 2.1 10.6 0.3 1 23 719 742 719 742 0.94 19 19 8.8e-05 0.012 17.6 0.4 2 23 749 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTGGACCCCGCGCTCCCAGGCGGCTTATGCCGGAGCTGTTCTGATGACACCCTCGCAGCCATTACCTTCAAGAACCTCTGTGCACTGTCCGCACACCATTGGGCAGAAGGTGCCAACTACATCTCCCTACCCCCAACTCCCACTGAAGATGATAAAGCCTACTTCATCCTCTATAACGACGAAAAAACCATAGTAAAAGACCAAATCGCTAGAGTTCCAACCACAAAGGATGCGGTTGAAAGGTTAAATATGAGGTGGGCGAAACCTGCAAAAAGTCGAAAAACCAGACGTCATCCAGGGTATATGAAAGAATCTTGCAGATGTCCCGATTGTGGTAAAAAGTTTTCGACGGCTGATTATTTGAACTACCATCTTAGGAACACGCTCAAACGAGCTTGTCGCATTTGCCAAACGGTCGTTCACAAGAAAAAGTTGGCTAAACATTTGTTAATCATTCACGACTTACGtgtctttgaatgccatatctgcAATAAGTTGTTTGATGAGAAAGAATTTATGAAGCACCATATCGATGAGAAACACGGGAGGTTAATGCACACTTGTAGCCATTGCGGCAACAGTTTTACGAATGAAAGAGCTTTAAGAGCTCATGCACACTCCCACTCACTATTTCACTGCAGTTCTTGTAACATGAGCTATGATAACGTCAAGTGTTTCAAATACCACCAACAAATATGTGAATTCATTCATCGACCATCAGTCGAATTCAAATCCTTTACTTGTGACCATTGTGGCGTTACCTACAATCGAAAACCGTCACTCAGAATACACATTATCCAAAAACATCTCAACGTTTTGCCGTATGTGTGCCAAACGTGTGGAAAACGGACTTCGACGCTAGCGCATTTAAAGTCTCACGAAAAAGTGCACAAAACTGAGCGAAAGGTCTTCCAATGCGTTTGTGGGGCTCAACTGACAACTGAATTAGGTTTTCAGTTGCATCAGAGAATACATACTGGCGAAAGACCGTATAAATGCCAGCATTGTGGAGACAGATTCCTCTCATCTTCGAGAAGGCTGGATCATATAAAGAGACGCCATAGAGGAGCAAAAGATTTTAAGCATGGCTGCGAGCAGTGTTCAGCTCGCTTTatgaAAGAAGAATCCTTAGTACCAGTAGGCGCATGTGTCGGCTGCGCTAGCACAGTCCTCGCCGCACAAGAGTTCCGCATCTTTGTGAGGAACTCAGAGAAACTATGGCGGAAAGCAATAATCAACCTCTCTACCCTCCCACAATCAAGTGCCCCTTCCGTCAAATCAGTCTGCGCCTTCATTAAAACAGACCTCTCGATGCAAACATTCAAAGACTACAACACTAACGATGTTAAAACGATAATTAATCGATTAAAAAATCGAGTAAAAAAAAAGACAGTTGAAAGGAAACCGAGAGGCGCCCGCACTGGACCACCTTGTACTTGTACCGACTGTGGTAAAGGCTTTCTGAGTCCATACTACCTAAATATGCACTTACGAAATAGTGGACACAAGGAGGCCTGTCTCACTTGTGGATCAGTCTTCGTTAGAGGGAAACAGATGCAAGAGCATCTATCTTCAGTACACAATGAGGTTGTATTCTTATGTAAAAAGTGTCCTATTCTATGCCCGACTGAAGCGCAATTGAAAAAACACGTGAAAAAGGCACATAAAGCAGGAGTTTTGACATGTACAGATTGTGGCAGGATCTTCCAAAGAAATGCTTCCTTTGAATGTCATGCACACATGCACGCGGTCAGGACTTGTCGTGCATGTGGCGTACAGTTCACTAATCGAGGCTGTTATAGAGAACATAGAGCTCAATGCGAGCCTGATGCCAAGCCTAATGCCCAAGACATGCCAAGGAACCGACGCTCCAACATCCGAGATCCTGCAACCTTTACCTGCGACGATTGTGGCAAAACCTACAACTCTAGACCTCAACTAAAGAACCACATCCTCTGGATCCACATGGATATACGACCTCATCAATGCGATTGGTGCGGAAAAAGGTTTTACACTCCCGCAAGACTGGCCGAACACACAGTAGTACACACCCGCGCTCGAAATTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCCAAAATGGCCGCCGTTTACCATAGACGAAGACATACGGGTGAGAGGCCGTATGAATGTGTAGATTGTGGCGAGAAGTTTATTTCTGCTTCGCGTAGGTCGGAGCATGCTAAACGTAGGCATAATAAGGGATATAGGTTGCCTTGTCCGAAATGCCCTGCGAATTTTGTTAGGAGACATGAGCTCAACAAGCATCTTGAAAAGGCGCATAAGGATTTGGAAGAAACTACTCTGGTATGGCCGTAG
- Protein Sequence
- MELDPALPGGLCRSCSDDTLAAITFKNLCALSAHHWAEGANYISLPPTPTEDDKAYFILYNDEKTIVKDQIARVPTTKDAVERLNMRWAKPAKSRKTRRHPGYMKESCRCPDCGKKFSTADYLNYHLRNTLKRACRICQTVVHKKKLAKHLLIIHDLRVFECHICNKLFDEKEFMKHHIDEKHGRLMHTCSHCGNSFTNERALRAHAHSHSLFHCSSCNMSYDNVKCFKYHQQICEFIHRPSVEFKSFTCDHCGVTYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLKSHEKVHKTERKVFQCVCGAQLTTELGFQLHQRIHTGERPYKCQHCGDRFLSSSRRLDHIKRRHRGAKDFKHGCEQCSARFMKEESLVPVGACVGCASTVLAAQEFRIFVRNSEKLWRKAIINLSTLPQSSAPSVKSVCAFIKTDLSMQTFKDYNTNDVKTIINRLKNRVKKKTVERKPRGARTGPPCTCTDCGKGFLSPYYLNMHLRNSGHKEACLTCGSVFVRGKQMQEHLSSVHNEVVFLCKKCPILCPTEAQLKKHVKKAHKAGVLTCTDCGRIFQRNASFECHAHMHAVRTCRACGVQFTNRGCYREHRAQCEPDAKPNAQDMPRNRRSNIRDPATFTCDDCGKTYNSRPQLKNHILWIHMDIRPHQCDWCGKRFYTPARLAEHTVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGERPYECVDCGEKFISASRRSEHAKRRHNKGYRLPCPKCPANFVRRHELNKHLEKAHKDLEETTLVWP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274608;
- 90% Identity
- iTF_01527597;
- 80% Identity
- -