Mper023181.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376673.1:11533050-11536470[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4e-06 0.0001 23.0 1.3 1 21 108 128 108 129 0.94 2 19 4.3 3.3e+02 2.5 3.2 3 23 135 155 134 155 0.92 3 19 0.0057 0.43 11.6 0.2 1 23 160 183 160 183 0.90 4 19 0.00078 0.059 14.3 2.9 1 23 188 210 188 210 0.96 5 19 1.3 1e+02 4.1 4.7 1 21 213 233 213 234 0.94 6 19 4.6e-05 0.0035 18.2 1.1 1 23 248 271 248 271 0.95 7 19 1.7e-05 0.0013 19.5 1.6 1 23 277 299 277 299 0.98 8 19 7.5 5.7e+02 1.8 0.1 5 23 309 327 307 327 0.91 9 19 1.3 96 4.2 2.8 1 23 333 356 333 356 0.90 10 19 0.00012 0.0093 16.8 1.0 2 22 482 502 481 505 0.89 11 19 0.022 1.7 9.7 0.0 3 23 509 530 508 530 0.95 12 19 0.018 1.4 10.0 1.3 1 23 535 558 535 558 0.95 13 19 5.7e-05 0.0043 17.9 0.6 2 23 564 585 563 585 0.96 14 19 0.87 66 4.7 1.2 2 20 589 607 589 609 0.91 15 19 2.7e-06 0.00021 22.0 1.2 1 23 635 658 635 658 0.95 16 19 0.0009 0.068 14.1 0.8 1 23 664 686 664 686 0.92 17 19 0.062 4.7 8.3 0.1 1 23 692 714 692 714 0.97 18 19 0.0032 0.24 12.3 0.3 1 23 720 743 720 743 0.94 19 19 2.5e-05 0.0019 19.0 0.4 2 23 750 772 749 772 0.94
Sequence Information
- Coding Sequence
- ATGGAGTTGGACCCTGCCCTCCCCTGCGGCTTATGCCGGAGCTGTTCCGACGACACCCTCGCAGCCATTACGTTCAAGAACCTATGTGCTTTGTCTGCACACCACTGGGTAGAAGCATCCAACTACATATCCCAACCACCGACTCCCACTGATGAAGATAAAGCCTACTTCATCCTTTATAACGATGAAAAGACCATAGTCAAAGACCAAATAGCCAGAGTCCCTACCACAAAGGATGCTGAGGACAGGTTGAATATGAAATGGGTTAAACCAGTCAAAACTCGAAAACCCAGACGTCCACAAGGCTTGATAAAGGAATCGTGCAAATGTCCTGATTGCGGCAAGAAGTTTTCGACGCCTGATTATTTGAACTATCATCTTAGAAACACGCTGAAACGAGCTTGTCGCAGATGTCGAGAGGTCGTTCACAAGAAGAAACTGTCCAGACATTTGCAGACCAATCATAACATTCATTTATTTGACTGCAATATCTGTAATAAGTTATTTGAACAGGAAGAGTCTATGAGGCAGCATGTTGATGAAGCCCACGGCAAATTAATGCACTCTTGCAGTCACTGTGGCATCAGTTACGTGAATGAAAGAGCACTAAGAGCTCATGTTCACTCTCACTCGTTGTTCCATTGCAGTTCTTGCAACATGAGTTTCGACAACGTGAAATGTTTCAAATACCATCAGCAAGTATGCGAATTCTTGCACCCACCCTCAGTCGAATTCAAATTCTTTACTTGCGACCATTGTGGTGTTACTTACAACCGAAAACCGTCACTGAGAATACATATCATCCAAAAACACCTGAATGTTCTGCCTTACGTTTGCCAAACATGTGGCAAACGGACTTCGACGTTAGCTCATTTGAGGTCCCACGAGAGAGTGCATAAAACTGAGCGAAATATCTTCCAATGCGTTTGTGGGGCTCAACTAACAACCGAACTAGGTTACCAGTTACACCAGAGAATTCATACTGGAGAAAGACCTTACAAATGTGAGCACTGTGGAGATAGATTCCTTTCATCTTCAAGGAGACTAGACCATATAAAAAGACGCCACAGAGGAGCGAAAGACTTTAAGCATGGCTGCGAGCAGTGTTCAGCTCGTTTTATGCACGAAGAATCCACAATACCACTCGGCGCATGCGTTGCCTGTGCCAGCACAGCCCTCGCCGCTCAAGAATTTCGTCTATTCGTCAGAAATTCAGATAAACTATGGCGGAAAGCTCTCATCAATCTCGCTACTCTACCAAATTCAGCTGCCCCTCCCGTCAAATCAGTCTTCGCATTCGTAAAAACGTCAGACCTCTCCATACAAACATTCAAAGACTACAACACTAACGACCCCAAAGCTATACTAAATCGATTAAAAAATCGAGTCACGAAAAAAACAATCGAAAGGAAACCTAGAGGGGCGCGCACTGGACCGTCTTGCAGCTGTCCTGACTGCGGAAAAAGCTTCCTTAGCCCTTACTACCTAAATATGCACTTAAGAAATAGTGGGCATAAGGAGGCCTGTCTCATCTGCGGATTGGTCTTCGTCAGAGGAAAGGAAATGCAAGAACATCTATCTTCAGTACACAATGAGATAGCATACCTATGTAAAAAGTGTCCGATCTTATGTCCAAATGAAACACAGTTGAAAAAACACGTGCAAAAGGCTCACAAAGCTGGCGCGTTGACGTGTAGAGATTGCGGTAGGACCTTCCCTAGAAACGCTTCCTTTGAAAGCCATTCACAAATGCACGCAGTTAGAACTTGTCGCGCTTGTGGCGTTCAGTTCACCAATCGAGGATGTTATAGGGAACACAGGTCTCAATGCGAACCTGATGCTAAGCCTAATGCCCAAGACATGCCCCGAAACCGACGATCCAACATCCGCGACCCTGCTACCTTCACATGTGACCATTGTGGCAAAACTTATAACTCTAGACCCCAGCTCAAAAATCACATCCTCTGGATTCACATGGACGTACGACCTCATCAGTGCCAGTGGTGCGGGAAAAGGTTTTATACCCAAGCCCGACTGGCTGAACACAACGTTGTACATACCCGCGCTCGAAATTTCGAATGCGATATTTGTGGCGCGAAACTCGTTTCCAAAATGGCCGCCGTTTACCATAGACGGAGGCATACAGGTGAGAGGCCGTATGAGTGTGAAGATTGCGGGGAGAAGTTTATTTCTGCTTCTCGTAGGTCGGAGCACGCTAAGCGGAGACATAATAAAGGGTTTAGGTTGCCTTGTCCGAAATGCCCTGCGAGCTTTGTCAGAAGACATGAGCTTACAAAACATTTGGACAAAGCGCATAAGCCGCCAGAAAATGCTTTAATTTGGCCACAATCTTAA
- Protein Sequence
- MELDPALPCGLCRSCSDDTLAAITFKNLCALSAHHWVEASNYISQPPTPTDEDKAYFILYNDEKTIVKDQIARVPTTKDAEDRLNMKWVKPVKTRKPRRPQGLIKESCKCPDCGKKFSTPDYLNYHLRNTLKRACRRCREVVHKKKLSRHLQTNHNIHLFDCNICNKLFEQEESMRQHVDEAHGKLMHSCSHCGISYVNERALRAHVHSHSLFHCSSCNMSFDNVKCFKYHQQVCEFLHPPSVEFKFFTCDHCGVTYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLRSHERVHKTERNIFQCVCGAQLTTELGYQLHQRIHTGERPYKCEHCGDRFLSSSRRLDHIKRRHRGAKDFKHGCEQCSARFMHEESTIPLGACVACASTALAAQEFRLFVRNSDKLWRKALINLATLPNSAAPPVKSVFAFVKTSDLSIQTFKDYNTNDPKAILNRLKNRVTKKTIERKPRGARTGPSCSCPDCGKSFLSPYYLNMHLRNSGHKEACLICGLVFVRGKEMQEHLSSVHNEIAYLCKKCPILCPNETQLKKHVQKAHKAGALTCRDCGRTFPRNASFESHSQMHAVRTCRACGVQFTNRGCYREHRSQCEPDAKPNAQDMPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDVRPHQCQWCGKRFYTQARLAEHNVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGFRLPCPKCPASFVRRHELTKHLDKAHKPPENALIWPQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274608;
- 90% Identity
- iTF_00952074;
- 80% Identity
- -