Ople037664.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997749.1:11872322-11875888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.6e-05 0.0067 18.1 0.4 2 21 109 128 108 129 0.94 2 17 0.036 4.4 9.2 0.1 1 22 160 181 160 183 0.90 3 17 0.00085 0.1 14.3 4.6 1 23 188 210 188 210 0.96 4 17 6.1 7.4e+02 2.2 4.5 1 21 213 233 213 234 0.94 5 17 7.1e-05 0.0085 17.7 1.3 1 23 248 271 248 271 0.95 6 17 8.9e-05 0.011 17.4 1.0 1 23 277 299 277 299 0.97 7 17 2.5 3e+02 3.4 3.3 1 23 333 356 333 356 0.90 8 17 0.00055 0.065 15.0 0.7 2 22 481 501 480 504 0.89 9 17 0.26 31 6.6 0.1 3 23 508 529 507 529 0.95 10 17 0.0092 1.1 11.1 2.3 1 23 534 557 534 557 0.95 11 17 0.0011 0.13 14.0 1.1 1 23 562 584 562 584 0.95 12 17 0.99 1.2e+02 4.7 1.2 2 20 588 606 588 608 0.91 13 17 1.3e-05 0.0016 20.0 1.7 1 23 634 657 634 657 0.95 14 17 0.00031 0.038 15.7 0.5 1 23 663 685 663 685 0.95 15 17 0.07 8.4 8.3 0.1 1 23 691 713 691 713 0.97 16 17 0.0037 0.44 12.4 0.3 1 23 719 742 719 742 0.94 17 17 0.00041 0.049 15.4 1.6 2 23 749 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTGGACCCCGCGCTCCCCTGCGGCTTATGCCGGAGCTGTTCTGATGACACCCTCGCAGCCATTACGTTCAAGAACCTCTGTGCACTGTCGGCACACCATTGGGTTGAAGGAGCGAACTACATCTCCCAACCACCATCTCCCACTGAAGACGATAAGGCCTACTTCATCCTCTATAACGACGAAAAAACCATAGTGAAAGATCAAATCGCCAGAGTTCCAACCACAAAGGATGCTCTGGAAAGGTTAAATATGAGGTGGGTCAAACCAGTAAAATCTCGAAAATCCAGACGTCAACAAGGGTATATAAAAGAATCTTGCATATGTCCTGATTGTGGCAAGAAATTCTCTGCGCCTGACTATTTGAACTATCATCTTAGAAACACGCTCAAAAGAGCTTGTCGTCGTTGTCGGATGGTCATACACAAGAAAAAGTTGGCAAAACATTTGTTGACGAATCACGACGTACGCGTGTTTGAATGCAATATCTGCAATATGTTGTTTGATGAGAAAGAATCTATGAAGCAGCATGTTGATGATGCTCACGGAAAGCTAATGCACACTTGTAGTCACTGTGGCAACAGTTTTACGAATGAAAGAGCATTAAGAGCTCATGCACACTCCCACTCGCTATTTCACTGCAGTTCTTGTAACATGAGCTACGACAACGTTAAGTGCTTCAAATACCACCAacaaatatgtaaatacatgCATAGACCAACAGTCGAATTCAAATTCTTTACTTGTGATTATTGTGGCGTTACTTACAACCGAAAACCTTCACTCCGAATACATATCATCCATAAACATCTCAATGTTCTGCCTTACGTTTGTCAAACTTGCGGAAAACGAACTTCTACGCTAGCTCATTTGAGGTCACACGAAGAAGTTCATAAAACTGAGAGAAAGGTCTTCCAGTGCTGCTGTGGTGCTCAATTAACAACTGAGTTAGGTTTCCAATTGCACCAGAGAATCCATACTGGGGAAAGACCATACAAATGCCAACATTGTGGGGACAGATTCCTCTCGTCTTCAAGAAGACTGGATCATATAAAAAGGCGCCATAGAGGAGCAAAGGATTTCAAGCATGGCTGTGAGCAGTGTTCGGCTCGCTTTatgaaaGAAGAATCCTTGACACCACCAGGTGCATGCGTCGCCTGCGCCAGCACAGCCCTTGCCGCACAAGAGTTCCGCGTCTTTGTTAGGAACTCAGAGAAACTATGGCAGAAAGCTATTATTAACCTCGGTACCCTGCCAAATTCTGCTGCTCCTTCTGTCAAATCAGTTTGTGCATTCATGAAAACAGATCTCTCGATACAAACATTCAAAGACTACAACACTAACGATGCGAAAACTATCATAAATCGATTAAAAAATCGAGTCACTAAAAAACCAGTCGAAAGGAAACCGAGAGGGGCGCGCACTGGACCGTCTTGTAGCTGTCCTGATTGTGGAAAAGGCTTTTTAAGTCCGTACTACTTAAATATGCACTTACGAAATAGTGGGCATAAAGAGGCCTGTCTCACTTGTGGGTCAGTCTTCGTTAGAGGAAAAGAGATGCAAGAACATCTGTCTTCTGTACACAATGAAGTTGTGTTCTTGTGTAAAAAATGTCCAATCTTATGCCCTAATGAATCGCAGttgaaaaaacacgtaaaaaagtCTCACAAAGCTGGAGCGTTCACATGTGCTGATTGTGGCAGAACGTTTCCTAGGAACGCCTCCTTTGAATGTCACGCACAAATGCACGCGGTCAGGACTTGTCGTGCTTGCGGCGTACAGTTCACCAATCGGGGCTGTTATAGAGAACATAGATCTCAGTGCGAACCAGATGCTAAACCTAACGCTCAAAATATGCCCAGAAACCGACGCTCCAACATCCGTGACCCTGCAACTTTTACTTGCGATCATTGTAACAAAACGTATAACTCTAGGCCTCAACTAAAGAACCACATCCTCTGGATTCACATGGATATACGACCTCATCAATGCCAATGGTGCGGGAAAAGGTTTTACACCCCCGCACGACTGGCTGAACACACAGTAGTCCATACCCGCGTTCGAAATTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCTAAAATGGCTGCAGTTTACCATAGACGAAGGCATACGGGAGAACGGCCGTATGAATGTGAAGATTGTGGCGAAAAGTTTATTTCTGCGTCTCGTAGGTCGGAGCATGCTAAACGTAGGCACAATAAGGGGTATAGGTTGCCTTGTTTGAAATGCTCTTTAAATTTTGTTAGGCGACATGAGTTAAAGAAGCATATGGAAAAGGCTCATAAAGGCCCTGAAGCTCTGGTTTGGCCACAGTGA
- Protein Sequence
- MELDPALPCGLCRSCSDDTLAAITFKNLCALSAHHWVEGANYISQPPSPTEDDKAYFILYNDEKTIVKDQIARVPTTKDALERLNMRWVKPVKSRKSRRQQGYIKESCICPDCGKKFSAPDYLNYHLRNTLKRACRRCRMVIHKKKLAKHLLTNHDVRVFECNICNMLFDEKESMKQHVDDAHGKLMHTCSHCGNSFTNERALRAHAHSHSLFHCSSCNMSYDNVKCFKYHQQICKYMHRPTVEFKFFTCDYCGVTYNRKPSLRIHIIHKHLNVLPYVCQTCGKRTSTLAHLRSHEEVHKTERKVFQCCCGAQLTTELGFQLHQRIHTGERPYKCQHCGDRFLSSSRRLDHIKRRHRGAKDFKHGCEQCSARFMKEESLTPPGACVACASTALAAQEFRVFVRNSEKLWQKAIINLGTLPNSAAPSVKSVCAFMKTDLSIQTFKDYNTNDAKTIINRLKNRVTKKPVERKPRGARTGPSCSCPDCGKGFLSPYYLNMHLRNSGHKEACLTCGSVFVRGKEMQEHLSSVHNEVVFLCKKCPILCPNESQLKKHVKKSHKAGAFTCADCGRTFPRNASFECHAQMHAVRTCRACGVQFTNRGCYREHRSQCEPDAKPNAQNMPRNRRSNIRDPATFTCDHCNKTYNSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCLKCSLNFVRRHELKKHMEKAHKGPEALVWPQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274608;
- 90% Identity
- iTF_01527597;
- 80% Identity
- -