Xtog049480.1
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970818.1:2217614-2220999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.7e-06 0.00024 23.0 1.3 1 21 108 128 108 129 0.94 2 17 0.096 13 8.0 0.1 1 23 160 183 160 183 0.86 3 17 0.002 0.28 13.3 3.6 1 23 188 210 188 210 0.96 4 17 8.8 1.2e+03 1.8 8.0 1 22 213 234 213 238 0.93 5 17 5.6e-05 0.0079 18.2 1.1 1 23 247 270 247 270 0.95 6 17 4.9e-05 0.0069 18.4 1.8 1 23 276 298 276 298 0.98 7 17 1.6 2.2e+02 4.2 2.8 1 23 332 355 332 355 0.90 8 17 0.0013 0.18 13.9 0.7 2 22 482 502 481 505 0.89 9 17 0.32 45 6.4 0.1 3 23 509 530 508 530 0.95 10 17 0.025 3.6 9.8 1.7 1 23 535 558 535 558 0.94 11 17 0.0016 0.22 13.6 1.3 2 23 564 585 563 585 0.94 12 17 1.1 1.5e+02 4.7 1.2 2 20 589 607 589 609 0.91 13 17 3.4e-06 0.00048 22.0 1.2 1 23 635 658 635 658 0.95 14 17 0.00034 0.048 15.7 0.5 1 23 664 686 664 686 0.95 15 17 0.076 11 8.3 0.1 1 23 692 714 692 714 0.97 16 17 0.004 0.56 12.3 0.3 1 23 720 743 720 743 0.94 17 17 3.2e-05 0.0045 18.9 0.8 2 23 750 772 749 772 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTGGACCCCGCGCTCCCCTGCGGCTTATGCCGGAGCTGTTCCGACGACACCCTCGCAGCCATTACATTCAAGAACCTCTGTGCACTGTCGGCACACCATTGGGCAGAAGGATCCAACTTCATTTCCCATCCCCCATCTCCCACTGAAGATGATAAAGCCTACTTCATCCTCTATAACGATGAGAAAACCATAGTGAAGGACCAAATCGCCAGAGTTCCTACCACGAAAGATGCAGTAGATAGGTTAAATATGAAGTGGGTGGAACCAGTGAAAACTCGGAAACCCAGACGTCCGCAAGGCTTGATAAAAGAGTCGTGCAAGTGTCCTGATTGCGGCAAGAAATTTTCGACGCCTGATTATTTGAACTACCATCTTAGAAACACGCTCACACGAGCTTGTCGCCGATGTCGAATGGTTGTGCACAAGAAAAAACTGGCTAAGCATTTGTCAAAGAATCACAACGTACATGTATTTGAATGCAATATCTGTAATAAATTGTTTGATGAAGAAGAGTTTATGAACCAGCATGTTGATGAGGCTCACGGCAAGCAAATGCACTCGTGCAGTCACTGTGGTAATAGTTTTGTGAATGAAAGAGCGCTGAGAGCTCACGCGCACTCCCACTCGCTGTTCCATTGTAGTTCCTGCAACATGAGCTTCGACAACGTTAAGTGTTTCAAATACCACCAGCAGACATGCGAATTGCACCGACCATCAGTCGAGTTCAAATTCTTTACTTGCGATCACTGTGGCGTTACTTACAACCGGAAGCCGTCACTTAGAATACACATCATCCAAAAACATCTCAACAttctaccttacgtttgccaaACCTGCGGAAAACGGACTTCCACATTAGCTCATTTGAAGTCTCACGAAAAAGTTCATATAACTGAGCGAAAGGTCTTTCAGTGCTGCTGTGGCGCTCAACTAACAACTGAACTAGGTTTCCAGTTACACAGAAGAATTCATACTGGAGAAAGACCTTACAAATGTGAACATTGTGGGGACAGATTCCTCTCTTCTTCAAGAAGGCTGGACCATATAAAAAGACGCCACAGAGGAACAAAGGAATTAAAACACGGCTGCGAGCAGTGTGCGGCTCGCTTTATGAAAGAAGAATCCTTAATACCAGTAGGTGCGTGTGTCGCTTGCGCCAGCACAGCCCTCGCAGCGCAAGAATTCCGCCTCTTTGTCAGGAACTCGGAGAAACTGTGGCGGAAAGCTCTCATCAATATCGCTACTTTGCCAAACACAATATTTGTCCCTTCCGTCAAATCAGTCTGCGCATTCATTAAAACATCGGACCTCTCGATACAAACATTCAAAGACTACAACACTAGCGACGCCAAAACGATCCTAAATCGATTAAAGAATCGAGTCACGAAAAAACCTGTTGAGAGGAAACCTAGAGGAGCGCGCACCGGACCCTCTTGCAGCTGTCCTGACTGTGGAAAGGGCTTCTTAAGTCCGTACTACCTAAATATGCATCTAAAAAATAGTGGACATAAGGAGGCCTGTCTCCTTTGTGGATCAGTCTTCGTTAGGGGGAAAGAAATGCAGGAGCATCTGTCTTCCGTTCACAATGAGATTGCATTCTTATGTAAAAAGTGTCCAATTCTATGTCCGAATGAAACACAGTTGAAAAAACACGTGAAAAAGGCCCACAAAGCGGGAGCGTTAACGTGTACAGACTGTGGCAGGACCTTCCCTAGAAACGCTTCCTTTGAATGTCATGCACAAATGCATGCAGTCAGGACTTGTCGCGCTTGCGGCGTACAGTTCACCAACCGGGGCTGTTATAGAGAACATAGGTCTCAATGCGAACCAGATGCTAAGCCTAATGCTCAAGATGTACCTAGAAACCGACGCTCCAACATCCGTGACCCTGCAACCTTCACTTGTGACCATTGTGGCAAAACTTATAACTCTAGACCTCAACTCAAAAACCATATACTCTGGATTCATATGGATATACGACCTCATCAGTGTCAGTGGTGCGGAAAAAGGTTTTACACCCCTGCACGACTGGCAGAACATACTGTAGTCCATACCCGCGTTCGAAATTTCGAATGCGACATTTGTGGCGCGAAACTAGTTTCGAAAATGGCCGCCGTGTACCATAGACGAAGGCATACGGGTGAGAGGCCGTATGAATGTGAAGATTGTGGGGAGAAATTTATTTCTGCATCTCGTAGGTCTGAGCATGCTAAACGTAGACACAATAAAGGATACAGGCTCCCTTGTTTGAAATGCCCTGCAAGTTTTGTAAGAAAACATGAGTTGAAAAAGCATATGGAGAAGGCGCATAAAGGGCCAGAAAATGCTCTAGGTTGGCCACAATGA
- Protein Sequence
- MELDPALPCGLCRSCSDDTLAAITFKNLCALSAHHWAEGSNFISHPPSPTEDDKAYFILYNDEKTIVKDQIARVPTTKDAVDRLNMKWVEPVKTRKPRRPQGLIKESCKCPDCGKKFSTPDYLNYHLRNTLTRACRRCRMVVHKKKLAKHLSKNHNVHVFECNICNKLFDEEEFMNQHVDEAHGKQMHSCSHCGNSFVNERALRAHAHSHSLFHCSSCNMSFDNVKCFKYHQQTCELHRPSVEFKFFTCDHCGVTYNRKPSLRIHIIQKHLNILPYVCQTCGKRTSTLAHLKSHEKVHITERKVFQCCCGAQLTTELGFQLHRRIHTGERPYKCEHCGDRFLSSSRRLDHIKRRHRGTKELKHGCEQCAARFMKEESLIPVGACVACASTALAAQEFRLFVRNSEKLWRKALINIATLPNTIFVPSVKSVCAFIKTSDLSIQTFKDYNTSDAKTILNRLKNRVTKKPVERKPRGARTGPSCSCPDCGKGFLSPYYLNMHLKNSGHKEACLLCGSVFVRGKEMQEHLSSVHNEIAFLCKKCPILCPNETQLKKHVKKAHKAGALTCTDCGRTFPRNASFECHAQMHAVRTCRACGVQFTNRGCYREHRSQCEPDAKPNAQDVPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCLKCPASFVRKHELKKHMEKAHKGPENALGWPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274608;
- 90% Identity
- iTF_00375586; iTF_00364289; iTF_00726721; iTF_00907265; iTF_00121699; iTF_01441316; iTF_00908167; iTF_00667788; iTF_01526348; iTF_00147853; iTF_01094286; iTF_00039122; iTF_00425714; iTF_00038068; iTF_00120789; iTF_00123608; iTF_00122681; iTF_00758490; iTF_00449501; iTF_00173475; iTF_00928934; iTF_00042882; iTF_00301443; iTF_01532360; iTF_01064905; iTF_01085673; iTF_00447498; iTF_00685711; iTF_00302391; iTF_00040122; iTF_01192975;
- 80% Identity
- -