Sver005707.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387309.1:5275120-5279281[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5e-06 0.00012 22.7 0.8 2 21 109 128 108 129 0.94 2 17 0.0039 0.3 11.9 2.6 2 23 161 183 160 183 0.95 3 17 0.0056 0.42 11.4 0.7 1 23 188 210 188 210 0.96 4 17 4.1e-05 0.0031 18.2 1.1 1 23 248 271 248 271 0.95 5 17 5.8e-05 0.0044 17.7 2.5 1 23 277 299 277 299 0.97 6 17 2.2 1.7e+02 3.3 0.3 5 23 309 327 307 327 0.95 7 17 2.6 2e+02 3.0 1.6 1 23 333 356 333 356 0.79 8 17 0.00023 0.018 15.8 0.2 3 22 483 502 483 505 0.92 9 17 0.074 5.6 7.9 0.1 3 23 509 530 508 530 0.95 10 17 0.012 0.88 10.4 1.1 1 23 535 558 535 558 0.94 11 17 5.2e-05 0.0039 17.8 0.2 2 23 564 585 563 585 0.96 12 17 0.79 60 4.7 1.2 2 20 589 607 589 609 0.91 13 17 2.4e-06 0.00019 22.0 1.2 1 23 635 658 635 658 0.95 14 17 0.00017 0.013 16.2 0.5 1 23 664 686 664 686 0.95 15 17 0.055 4.1 8.3 0.1 1 23 692 714 692 714 0.97 16 17 0.0029 0.22 12.3 0.3 1 23 720 743 720 743 0.94 17 17 1.3e-05 0.00097 19.7 0.6 2 23 750 772 749 772 0.95
Sequence Information
- Coding Sequence
- ATGGAGATGGACCCTGCTCTACCCTGCGGCTTATGCGGGAGCTGCTCAAACGACACCCTCGCAGCTATTGCCTTCAGGAACCTCTGTGCACAGTCGTCACACCACTGGACTGAAAGCTCGACCTACCTCTCCCAGATCTACCCGCCAACTGACGAGGACAAAGCCTACTTCATCTTCTATAAAGATGAGAAAACTATAATGAAAGACCAGACTGATAGAGTTCCTACCAAAAAGGATGCTGTAGATAGGTTAAACATGAGATACCACACGAAATCAGAAAGGACCCGAAGAACACGACGTTCGCATGGGTTGAGAGCATTTTGCGAGTGTCCCGATTGTGGGAAGAAATTCTCAACGCCTGATTATTTAAATTACCATCTTAGAAACACGCTTAAACGAGCTTGTAGAAAGTGCTGCACAGTTGTGCATAAGAAGAAATTATCCAAACATTTATTGGTGCATCACAACATAAACTTTACACAGTGCAACGTTTGTCATAAGTTGTTTGAAGACTATACACTTATGAAGCAGCATATGAAAGAGACTCACGGCAAAAATGCGCACTCTTGCGGCGTTTGTGGTAACAGTTATATAAACGAAAGAGCGCTGAGAGCTCATGCGCATTCCCATTCTTTGTTTCATTGCACATCTTGCAACGTTAGTTACGAAAACATTAAATGTTTCAAATACCATCAAAAGCAGTGCAAATTCAATGACCGTTCAAGTGTCGAATTCAAACACTTTACCTGCGACCATTGTGGTGTGACTTACAACCGAAAACCATCTTTAAGAATCCATATCATCCAAAAACATCTAAACGTTCTACCTCACGTGTGCCAAATTTGCGGAAAAAGGACATCTACTTTGGCTCATTTGAGGTCGCACGAAAAAGTTCACAAGACCGAGCGAATGGTATTCCAATGTTACTGCGGAGCAAAATTGCGCACAGAATTAGGTTATCAGTTACATCAAAGAATACACACTGGGGAAAGACCGTATGAATGCGAACATTGCGGTGACAGATTCCTCTCGTCTTCCAGGAGACTAGACCACGTGAAAAGACGCCACAGAGGAGCAAAAGACTTCAAACATGGCTGTGATCAGTGTTCGGCTCGGTTTATAAAAGAAGAATCCCTAATACCAGTAGGCGCATGCGTCGCCTGCGCCAGCACAGCACTCGCCGCGCAAGAGTTCCGTCTTTTCGTCAAAAACTCGCATAAAATATGGCAAAAAGCCATCATCAATCTCTCCTCTTTACCCAACACGGTTGCTCCGCCAGTCAAATCAGTGTGCGCGTTCGTCAAACAATCCGACCTTTCAATACAGACTTTCAAAGATTACAACAAAAGTGACGCGAAATCGATTATAAATCGATTGAAAAATCGAGTCGCGAGAAAACCTATCGATCGGAAGCCTAGAGGCGCACGCACAGGACCTTCTTGCGGCTGTCCTGATTGTGGCAAGAGCTTCCTTAGCCCATACTACCTAAATATGCATTTACGAAACAGCGGACACAAAGAGGCGTGCCTAATTTGCGGCTCAGTCTTCGTCAGAGGGAAAGAAATGAAAGAACACCTTTCTTCTGTACATAACGAGAATGCCTTCCTATGCAAGAAGTGTCCAATTTTATGCCCAAATGAAGCTCAATTGAAAAAACATGTGAAAAAAGCTCACAAAACCGGGGCCTTGACTTGTGCGGATTGTGGGAGGACGTTCCCAAGGAAACCGTCATTCGAAGCTCACTCCCAAATGCATGCAGTCAGGACTTGTAGGGCATGTGGAGTACAATTCACGAATCGGGCGTGTTATAGGGAACATAGGTCTCAATGCGAACCCGACGCGAAACCTAATGCTCAAAACGTACCTCGAAATCGTAGATCCAACATTCGCGACCCTGCCACCTTCACCTGCGACCACTGCGGCAAAACCTACAACTCTAGACCACAACTAAAAAATCATATACTCTGGATACATATGGACATACGACCTCATCAGTGCACGTGGTGCGGAAAGAGGTTTTATACCCCCGCACGCTTGGCTGAACACACAGTTGTCCATACCCGCGTTCGAAATTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCCAAAATGGCCGCCGTTTACCATAGACGAAGGCATACTGGCGAAAGGCCTTATGAATGTGACGACTGTGGCGAGAAATTTATTTCGGCATCTCGTAGGTCGGAACATGCTAAACGTAGGCACAATAAAGGCTATAGGTTACCATGCACGATATGCCCAGCTAATTTTGTAAGGAAACACGAACTAAAAAAGCACATGGAAAAAGCCCATAAAGCTGAAGATGGTATCACTAATCTAGTCTGGCTTCAGTGA
- Protein Sequence
- MEMDPALPCGLCGSCSNDTLAAIAFRNLCAQSSHHWTESSTYLSQIYPPTDEDKAYFIFYKDEKTIMKDQTDRVPTKKDAVDRLNMRYHTKSERTRRTRRSHGLRAFCECPDCGKKFSTPDYLNYHLRNTLKRACRKCCTVVHKKKLSKHLLVHHNINFTQCNVCHKLFEDYTLMKQHMKETHGKNAHSCGVCGNSYINERALRAHAHSHSLFHCTSCNVSYENIKCFKYHQKQCKFNDRSSVEFKHFTCDHCGVTYNRKPSLRIHIIQKHLNVLPHVCQICGKRTSTLAHLRSHEKVHKTERMVFQCYCGAKLRTELGYQLHQRIHTGERPYECEHCGDRFLSSSRRLDHVKRRHRGAKDFKHGCDQCSARFIKEESLIPVGACVACASTALAAQEFRLFVKNSHKIWQKAIINLSSLPNTVAPPVKSVCAFVKQSDLSIQTFKDYNKSDAKSIINRLKNRVARKPIDRKPRGARTGPSCGCPDCGKSFLSPYYLNMHLRNSGHKEACLICGSVFVRGKEMKEHLSSVHNENAFLCKKCPILCPNEAQLKKHVKKAHKTGALTCADCGRTFPRKPSFEAHSQMHAVRTCRACGVQFTNRACYREHRSQCEPDAKPNAQNVPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDIRPHQCTWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECDDCGEKFISASRRSEHAKRRHNKGYRLPCTICPANFVRKHELKKHMEKAHKAEDGITNLVWLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274608;
- 90% Identity
- -
- 80% Identity
- -