Egla016363.1
Basic Information
- Insect
- Eugnorisma glareosa
- Gene Symbol
- -
- Assembly
- GCA_947578425.1
- Location
- OX387983.1:11420067-11424124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8e-06 0.00015 22.6 1.2 2 21 109 128 108 129 0.94 2 17 0.029 2.5 9.3 0.3 1 23 160 183 160 183 0.90 3 17 0.0011 0.091 13.9 4.5 1 23 188 210 188 210 0.96 4 17 5.3 4.6e+02 2.2 4.5 1 21 213 233 213 234 0.94 5 17 4.5e-05 0.0039 18.2 1.1 1 23 248 271 248 271 0.95 6 17 3.9e-05 0.0034 18.4 1.8 1 23 277 299 277 299 0.98 7 17 2.2 1.9e+02 3.4 3.3 1 23 333 356 333 356 0.90 8 17 0.0013 0.12 13.5 1.1 2 22 481 501 480 504 0.89 9 17 0.22 19 6.6 0.1 3 23 508 529 507 529 0.95 10 17 0.027 2.3 9.4 1.0 3 23 536 557 535 557 0.97 11 17 0.0013 0.11 13.6 1.3 2 23 563 584 562 584 0.94 12 17 0.7 61 5.0 0.8 2 20 588 606 588 608 0.92 13 17 1.8e-06 0.00015 22.6 0.3 1 23 634 657 634 657 0.95 14 17 0.00027 0.024 15.7 0.5 1 23 663 685 663 685 0.95 15 17 0.061 5.3 8.3 0.1 1 23 691 713 691 713 0.97 16 17 0.0032 0.28 12.4 0.3 1 23 719 742 719 742 0.94 17 17 2.7e-05 0.0023 18.9 0.5 2 23 749 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTGGACCCCGCGCTCCCAGGCGGCTTATGCCGGAGCTGTTCTGATGACACCCTCGCAGCTATTACCTTCAAGAACCTCTGTGCACTGTCCGCACACCATTGGGCAGAAGGTGCCAACTACATCTCCCAGCCCCCATGTCCCACTGAAGATGATAAAGCCTACTTCATTCTCTATAACGACGAAAAAACCATAGTGAAAGACCAAATCGCCAGAGTTCCTACCACAAAGGATGCTCTGGAGAGGTTAAATATGAGGTGGGTGAAACCTATAAAAACTCGAAAATCTAGACGTCATCAAGGGTATATGAAAGAATCTTGCAGATGTCCCGATTGTGGCAAAAAATTCTCGACGCCTGACTATTTGAACTACCATCTTAGAAACACGCTCAAGCGAGCTTGTCGCTGTTGCCGAACGGTCATTCACAAGAAAAAGTTGGCCAAACATTTGCTGATCAATCACGACGTACGTGTTTTTGAATGCAATGTCTGCAATAAGTTATTTGATGAGAAAGAATTTATGAAGCAGCATGTTGATGAGGCTCACGGGAAGCTAATGCACTCTTGCAGTCACTGTGGCAACAGCTTTACAAATGAAAGAGCGTTAAGAGCTCATGCACACTCCCACTCACTCTTTCACTGCAGTTCTTGTAACATGAGCTACGACAACGTTAAATGTTTCAAATACCACCAACAAATATGTGAATACATGCACCGACCATCAGTCGAATTCAAATTCTTTACTTGCGACCATTGTGGCGTTACCTACAACCGGAAACCTTCACTCAGAATACATATTATCCAAAAACATCTCAACGTTCTGCCTTATGTTTGCCAAACCTGCGGGAAGCGGACTTCTACGCTAGCTCATTTGAAGTCTCACGAAAAAGTTCATAAAACTGAGCGAAAAATCTTCCAGTGCTGTTGTGGGGCTCAGCTAACAACTGAATTAGGTTTCCAATTGCACCAGAGAATCCATACGGGGGAACGACCATACAAATGCCAACATTGTGGGGACAGATTCCTCTCATCTTCAAGAAGGCTAGACCATATAAAAAGACGCCATAGAGGAGCTAAGGATTTCAAGCATGGCTGCGAGCAGTGTTCGGCTCGCTTTATGAAAGAAGAATCCTTAATACCAGTAGGTGCATGTGTCGCCTGCGCCAGCACAGCCCTCGCCGCACAAGAGTTCCGCCTCTTTGTAAGGAATTCAGAGAAACTATGGCGGAAAGCTTTAATCAACCTCGCTACCCTGCCAAATTCAGGTGCCCCTTCCGTCAAATCAGTCTGCGCATTCATTAAAACAGACCTCTCGATACAAACATTCAAAGATTACAACACTAACGATGCCAAAACGATCATAAATCGATTAAAAAATAGAGTCACGAAAAAACCAGTCGAAAGGAAACCGAGAGGTGCGCGCACTGGACCTCCTTGTAGTTGTACTGATTGTGGTAAGGGCTTTCTAAGTCCATACTACTTAAATATGCACTTACGAAATAGTGGACACAAGGAGGCCTGTCTCACTTGTGGATCAGTCTTCGTTAGAGGGAAAGAGATGCAAGAGCATCTGTCTTCTGTACACAATGAGGTTGTACTCTTATGTAAAAAGTGTCCAATTCTATGCCCAAACGAAGCGCAATTGAAAAAACACGTGAAAAAGGCACACAAAGCTGGAGCGTTGACATGTACTGATTGTGGCAGGACGTTCCCTAGAAACGCTTCCTTTGAATGTCATGCACAAATGCACGCAGTAAGGACTTGTCGCGCATGCGGCGTGCAATTCACCAATCGGGGCTGCTATAGAGAACATAGGGCTCAATGTGAGCCAGATGCCAAGCCTAATGCCCAAGACGTGCCTAGGAACCGACGGTCCAACATCCGTGACCCTGCAACCTTTACTTGCGATGATTGTGGCAAAACGTACAACTCTAGACCTCAACTAAAGAACCACATCCTCTGGATCCACATGGATATACGACCTCATCAATGCCAATGGTGTGGAAAAAGGTTTTATACTCCCGCAAGACTGGCCGAACACACAGTTGTACATACCCGCGTTCGAAATTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCTAAAATGGCTGCCGTTTACCATAGACGAAGGCATACGGGTGAGAGGCCGTATGAATGTGAAGATTGTGGCGAGAAGTTTATTTCTGCTTCTCGTAGATCGGAGCATGCTAAACGTAGACACAATAAGGGATATAGGTTGCCTTGTTCGATATGCCCTGCGAATTTTGTTAGGAGACATGAGCTCAAGAAGCATATGGAAAAGGCGCATAAGGGTCCTGAAAATGCTCTGGTTTGGCCACAATAA
- Protein Sequence
- MELDPALPGGLCRSCSDDTLAAITFKNLCALSAHHWAEGANYISQPPCPTEDDKAYFILYNDEKTIVKDQIARVPTTKDALERLNMRWVKPIKTRKSRRHQGYMKESCRCPDCGKKFSTPDYLNYHLRNTLKRACRCCRTVIHKKKLAKHLLINHDVRVFECNVCNKLFDEKEFMKQHVDEAHGKLMHSCSHCGNSFTNERALRAHAHSHSLFHCSSCNMSYDNVKCFKYHQQICEYMHRPSVEFKFFTCDHCGVTYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLKSHEKVHKTERKIFQCCCGAQLTTELGFQLHQRIHTGERPYKCQHCGDRFLSSSRRLDHIKRRHRGAKDFKHGCEQCSARFMKEESLIPVGACVACASTALAAQEFRLFVRNSEKLWRKALINLATLPNSGAPSVKSVCAFIKTDLSIQTFKDYNTNDAKTIINRLKNRVTKKPVERKPRGARTGPPCSCTDCGKGFLSPYYLNMHLRNSGHKEACLTCGSVFVRGKEMQEHLSSVHNEVVLLCKKCPILCPNEAQLKKHVKKAHKAGALTCTDCGRTFPRNASFECHAQMHAVRTCRACGVQFTNRGCYREHRAQCEPDAKPNAQDVPRNRRSNIRDPATFTCDDCGKTYNSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCSICPANFVRRHELKKHMEKAHKGPENALVWPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274608;
- 90% Identity
- iTF_01527597;
- 80% Identity
- -