Basic Information

Insect: Bombus sonorus
Gene Symbol: -
Assembly: GCA_029958995.1
Location: JARWAU010000008.1:15585845-15590242[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.6e-05 0.004 18.1 1.7 1 23 91 113 91 113 0.98

2 19 1.1e-06 0.00012 22.9 0.6 1 23 119 141 119 141 0.98

3 19 0.00053 0.059 14.4 1.7 1 23 146 169 146 169 0.97

4 19 5e-05 0.0056 17.6 0.5 1 23 175 197 175 197 0.97

5 19 8.2e-05 0.0091 17.0 0.2 1 23 203 226 203 226 0.97

6 19 2.2e-06 0.00024 21.9 0.5 1 23 236 258 236 258 0.94

7 19 6.7e-05 0.0074 17.3 1.8 1 23 262 284 262 284 0.95

8 19 2.3e-05 0.0025 18.7 0.1 1 23 290 312 290 312 0.98

9 19 1.3e-06 0.00015 22.6 1.0 1 23 318 340 318 340 0.99

10 19 0.00018 0.02 15.9 2.4 3 23 596 617 595 617 0.96

11 19 0.0036 0.4 11.8 3.7 1 23 621 643 621 643 0.99

12 19 2.6e-05 0.0028 18.6 1.0 1 23 649 672 649 672 0.97

13 19 0.007 0.77 10.9 5.2 1 23 679 702 679 702 0.97

14 19 0.0022 0.25 12.5 3.6 1 23 736 759 736 759 0.95

15 19 0.44 49 5.2 0.5 5 21 772 788 771 789 0.90

16 19 5.5e-06 0.00061 20.7 0.8 1 23 796 818 796 818 0.95

17 19 6.1e-06 0.00068 20.5 6.7 3 23 824 844 822 844 0.97

18 19 3.5e-06 0.00038 21.3 1.4 1 23 850 872 850 872 0.99

19 19 3.6e-06 0.0004 21.3 0.8 1 23 878 900 878 900 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.6e-05	0.004	18.1	1.7	1	23	91	113	91	113	0.98
2	19	1.1e-06	0.00012	22.9	0.6	1	23	119	141	119	141	0.98
3	19	0.00053	0.059	14.4	1.7	1	23	146	169	146	169	0.97
4	19	5e-05	0.0056	17.6	0.5	1	23	175	197	175	197	0.97
5	19	8.2e-05	0.0091	17.0	0.2	1	23	203	226	203	226	0.97
6	19	2.2e-06	0.00024	21.9	0.5	1	23	236	258	236	258	0.94
7	19	6.7e-05	0.0074	17.3	1.8	1	23	262	284	262	284	0.95
8	19	2.3e-05	0.0025	18.7	0.1	1	23	290	312	290	312	0.98
9	19	1.3e-06	0.00015	22.6	1.0	1	23	318	340	318	340	0.99
10	19	0.00018	0.02	15.9	2.4	3	23	596	617	595	617	0.96
11	19	0.0036	0.4	11.8	3.7	1	23	621	643	621	643	0.99
12	19	2.6e-05	0.0028	18.6	1.0	1	23	649	672	649	672	0.97
13	19	0.007	0.77	10.9	5.2	1	23	679	702	679	702	0.97
14	19	0.0022	0.25	12.5	3.6	1	23	736	759	736	759	0.95
15	19	0.44	49	5.2	0.5	5	21	772	788	771	789	0.90
16	19	5.5e-06	0.00061	20.7	0.8	1	23	796	818	796	818	0.95
17	19	6.1e-06	0.00068	20.5	6.7	3	23	824	844	822	844	0.97
18	19	3.5e-06	0.00038	21.3	1.4	1	23	850	872	850	872	0.99
19	19	3.6e-06	0.0004	21.3	0.8	1	23	878	900	878	900	0.99

Sequence Information

Coding Sequence: ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAATGGGACGCGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCGTATCGTCAGAACCATCGCCAGAGCAAGTGAAACCTTCGTCCGATAGAAAAGATCGTATCTCGAAGGAGTCAAATTACCTTACAAATTCTGACAACGATTCACTGACAAATTCATCTACAAAGAGGAGGAAGAATAAAAGATTCGAAGATCAAGAACAATACATCTGCTCCACCTGCAAGTTACGTTTTGACAGACAAGGAGACTACAAGCGTCACATGATCAAGCACAGCGATCTTCGTCCTTACAAATGCGAAATCTGCGACAAGGCGTTTAAACGTTCCTCAGAGGTGTCCAACCACACTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGGTTTCACCACGATAAATAAATTCTCTTTAAGAATGCATCATCGTCGAGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTAGGTAGAAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAGTCCTACTTGGTAGCACACAAACGGGTAATTCAtagaattcaaaaaagcgcgccGAAGGAGTTCCAGTGCAATATCTGCAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGGTCTACACTCGCAGATGTTCCTGTGCGCCCAGTGCGGCAAAAAATTCGCAACCAATCACGCTTTGAAGCTTCACGGTCGAAAACACACAGGGGAGAGACCTTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCGCTCAGAGTGCATAAATTAACACACACGGGCGAGAGGCCATACGTGTGTGATCTGTGCGGGCAGAGTTTTACTCAGAGAAGTAGCATGATGGTGCATCGACGAAAACACCCCGGAAGTCATCCTCCGCCCCCTCCTCTACTTCTTAGCAGACTCGAGAGCGATGGACATAAGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATACAGAATTCCGTGTCCTTGAAAGTTGAAATAGATCACGACGAGAACAGTCAGAGGACAGTCAAAGACAATGAAGACGAAGTTAACGATAGTAGTTGCACTTTAGGAAGAGAAATAGTTGATGATTCGATCGTGGACTCGGTGAAAACTGTTTTGGTACCTGTTAGAGATCCAGTAACGAAGGAAATTAAGAATATCTTGGTGCCTGTTGAAGTAAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTCCAGCGGAGGATGGATCGGTGTCTTACGAAATTAAAAAGGTCGTTGTACCTATCAAGTCGGAATTGAGTTTATCGTCAAAAAAGAAAACAGGGAAAAGAACTTTATTAACGAATAAAGCTAGAAGTAAGCAGGTGAATtgtaagaaaaaagagaaaaaagaaaaagacgaagagaAACAAGAGACGTTATTGGGAAAAAGGACGAGGAGCCGAGAAAGGAAGAAGGATGAACAAAAGGAAGAGAAGGTAGAAAAGGAAACAGAGAAAGTACCGAAGTTAGAACTGGATAGTATATCGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACAATTTAAAGAACATTTGCCCATTCTGTCAGAAATGTTTCAGAGACGAGGACCAAATGCAAAAGCACGTCCTCAAGACACATAAGAAACCATATAGTTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAGAAAACACACGATGTACTTTCGTTTTATCGGTGTTCCATCTGTCAGAAACAGTACAAAACCGCGGCAGGATTAAAGAATCATCAGACCCGTGAACACAGTGACATAGACCCCAAATTTAAGTGTTATTACTGTAAGAAacaattcaaattaaaattagaCCTAAACCTTCACATCCACAGATCGCACATGAATACAACTTACATTTGCAGATTCTGTGGCATGGCAGTGAAGAATATCGTGCATCACGAACTAAAACACGAAAAGAACAAGAAGATCAGTTCTCTGCATCATTGCAGTATCTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTAAGGAAGGATTAGACATGTTAAGGACACTGTgtgaaaagaaatttcaatcTAGAAGTGATTTTTATCATCATGTGCTTAGCCAATCGGAGGCCAAGCAGCACAAGTGTGTCATTTGCGACAAAACATTTGCTTCTGAGTATAATCTTCGTAACCACGTCGCTCTACACTCGCAAACTTGCCTGTGCTCCCACTGTGGCAAGACTTTTACCACGAACTATTCGTTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAGTGTAAAATATGTTTAAAGACATTTGCCAGGTCAAACTCGCTTAAAATACATACGTTAACTCACACTGGTGAAAGACCATATGTGTGTGATTTATGCGGTCAAAGTTTCACGCAGAGAGGAAGCATGATAACGCATCGTCGTAAGCATCCCGAAAGTCATCCGCCGCCTGCTCCTTTGAAACTAAATAAACTAGAAAATAACGAACATTAA
Protein Sequence: MLKNHVVDCRTLGVVQWDAKSKDCGDQAIKIFESRSPVSSEPSPEQVKPSSDRKDRISKESNYLTNSDNDSLTNSSTKRRKNKRFEDQEQYICSTCKLRFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHTQIHRGIEYACEVCGFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQMFLCAQCGKKFATNHALKLHGRKHTGERPYECMVCSKAFARSAALRVHKLTHTGERPYVCDLCGQSFTQRSSMMVHRRKHPGSHPPPPPLLLSRLESDGHKRSTIAETSLDQGRNDRVQFQVTVPASSPTIQNSVSLKVEIDHDENSQRTVKDNEDEVNDSSCTLGREIVDDSIVDSVKTVLVPVRDPVTKEIKNILVPVEVRDESGLNIIKSVLIPFPAEDGSVSYEIKKVVVPIKSELSLSSKKKTGKRTLLTNKARSKQVNCKKKEKKEKDEEKQETLLGKRTRSRERKKDEQKEEKVEKETEKVPKLELDSISTDVSKEEVDQILDNLKNICPFCQKCFRDEDQMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQKTHDVLSFYRCSICQKQYKTAAGLKNHQTREHSDIDPKFKCYYCKKQFKLKLDLNLHIHRSHMNTTYICRFCGMAVKNIVHHELKHEKNKKISSLHHCSICSRKFKAWNSLENHLLMKHKAPKEGLDMLRTLCEKKFQSRSDFYHHVLSQSEAKQHKCVICDKTFASEYNLRNHVALHSQTCLCSHCGKTFTTNYSLKLHLRKHTGERPYQCKICLKTFARSNSLKIHTLTHTGERPYVCDLCGQSFTQRGSMITHRRKHPESHPPPAPLKLNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00222664; iTF_00226053; iTF_00226734; iTF_00224015; iTF_00218562; iTF_00227410; iTF_00233365; iTF_00219933; iTF_00225374;
90% Identity: iTF_00225374;
80% Identity: -