Blap014116.1
Basic Information
- Insect
- Bombus lapidarius
- Gene Symbol
- gtf3a
- Assembly
- GCA_936014575.1
- Location
- CAKXZU010000082.1:292870-297210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00059 0.042 14.2 3.4 1 23 91 113 91 113 0.98 2 18 9.8e-07 6.9e-05 23.0 0.6 1 23 119 141 119 141 0.98 3 18 0.00048 0.034 14.5 1.7 1 23 146 169 146 169 0.97 4 18 3.2e-05 0.0023 18.2 0.7 1 23 175 197 175 197 0.97 5 18 7.4e-05 0.0052 17.1 0.2 1 23 203 226 203 226 0.97 6 18 1.9e-06 0.00014 22.0 0.5 1 23 236 258 236 258 0.94 7 18 6e-05 0.0042 17.3 1.8 1 23 262 284 262 284 0.95 8 18 2.1e-05 0.0015 18.8 0.1 1 23 290 312 290 312 0.98 9 18 0.00016 0.011 16.0 2.4 3 23 545 566 544 566 0.96 10 18 0.0051 0.36 11.3 3.7 1 23 570 592 570 592 0.98 11 18 0.00087 0.061 13.7 0.5 1 23 598 621 598 621 0.96 12 18 0.0031 0.21 12.0 4.1 1 23 628 651 628 651 0.97 13 18 0.03 2.1 8.9 3.3 1 23 685 708 685 708 0.95 14 18 0.69 48 4.6 0.7 5 20 721 736 720 738 0.91 15 18 5e-06 0.00035 20.8 0.8 1 23 745 767 745 767 0.95 16 18 1.5e-06 0.0001 22.4 4.9 1 23 771 793 771 793 0.96 17 18 7.6e-06 0.00054 20.2 0.8 1 23 799 821 799 821 0.98 18 18 6.5e-06 0.00046 20.4 1.4 1 23 827 849 827 849 0.98
Sequence Information
- Coding Sequence
- ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAGTGGGACGTGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCATATCGTCAGAACCATCGCCAGAGCAAGTGAATCCTTCGTCTGATAGAAAAGATCGTACCTCGAAGGAGCCAAATTACGTTACAAATTCTGATAACGATTCACTGACAAATTCATCTACAAAGAGGAGGAAGAATAAAAGATTCGGAGATCAAGAACAATACATCTGCTCCACCTGCAAGTTACATTTTGACAAACAAggagactacaagcgtcacatgatcaagcacagcgatcttcgtccttacaaatgcgaaatctgcgacaaggcgtttaaacgttcctcagaggtgtccaaccacactcagatccaccgtggtatcgaatacgcgtgcgaagtatgcggtttcaccacgataaataaattctctttaagaatgcatcatcgtcgagttcaccagcgtgactttcgttatcgttgcgatcaatgtgacaagggtttcatgtctaattacgatctgcaggaccacaaggccagtcatctaggcagaaagaccttcatctgcgaattctgtggcaacgcctactcccaaaaatcctacttggtagcacacaaacgggtaattcatagaattcaaaaaagcgcgccgaaggagttccagtgcaatatctgtaacaagagtttcgctaccgagcagaatcttcgtaatcacgttggtctacactcgcagatgtttctgtgcgctcagtgcggcaaaaaattcgcaaccaatcacgctttgaagcttcacggtcgaaaacacacaggggagagaccttacgagtgtatggtttgctcgaaagctttcgccagatcggctgcgctcagagtgcataaattaacacacacaggcgagaggccGAGGTCTACGATCGCAGAAACGTCCCTGGGCCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATACAGAATTCCATGTCCTTGAAAGATGAAATATATCACGATGAGAACAGTCAAAGGACAGTCAGAGACAATGAAGACGAAGTTAACGATAGTAGTTTCACTTTAGGAAGAGAAGTAGTTGATGATTCGATCGTGGACTCGGTGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGATACCTATTGAAGTGAGGGACGAGTCTGGATTAAACATAGTCAAAAGTGTATTAATTCCTTTTCCAGCAGAGGATGGATCGATATCTTACGAAATTAAAAAGGTCGAAGTACCTATCAAGTCGGAATTGAGTTTATCGCCAAAAAAGAAAACTGAGAAAAAAATTTTATTAACAAATAAAGATAGAAGTAAGCAGGTGAATTGTAAGAAAAAAGAGGAGAAAGAAAACGAAGAGAAACGGGAGGCGTCATTGGAAAAAAGGACGAGGAGCCCAGAAAGGGAAAAGAAGGTAGAAAAGAAAACAGAGAAAGTATCAGAGTTAGAACTGGACAGTATATCGATAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAAAACATTTGCCCATTCTGTCAGAAGTGTTTCAGAGACGAGGACCAAATGCAAAAACACGTCCTCAAGACACATAAGAAACCATATAATTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAAAAAACACACGATGTGGTTTTGTTTTATCAGTGTTCCATCTGTCAGATGCAGTATAAAACCGCGATAGGATTAAAGAATCATAAGATCCGTGAACACAGTGACATAAACCCAAAATTTACGTGTTATTACTGTGAGAAGCGATTCAAATTAAAATTAGACCTAAACCTTCACATCCACAGATCGCACATGAACGTAACTTACATTTGCAGATTCTGTGGCATGGCAGTGAAGAACATCGTGCATCACGAACTAAAACACGAAAAGAACAAGAAAACCAGTTATCTGCATCATTGCAGTATCTGTTCTAGCAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTACGGAAGGATTAGGCATGTTAAGGACGCTGTGTGAAAAGAAATTTCAATCCAGAAGTGATTTTTATCATCATGTGTTTAGCCAATCGGAGGCCAAGCAGCACAAGTGTGTCATTTGCGACAAAACATTTGCTTCTGAGTATAATCTTCGTAATCACGTCGCTCTACACTCGCATACTTACCTGTGTTCCCACtgtggcaagaattttaccacgaagtactcgctgaagctgcatcttcgaaaacacactggcgaacggccgtatcagtgtaaaatatgtttaaagacatttgccagatcagcctcgcttaaactacatactgtaactcacactggtgaaaaaccatatatgtgtgatttatgtggtcaaagtttcactcagagaggaagcatgatgacgcatcgtcgtaagcatcctggaagtcatccgccgcCTCCTCCTTTGATACTAAATAAACTCGAAAATAACGAACATTAA
- Protein Sequence
- MLKNHVVDCRTLGVVQWDVKSKDCGDQAIKIFESRSPISSEPSPEQVNPSSDRKDRTSKEPNYVTNSDNDSLTNSSTKRRKNKRFGDQEQYICSTCKLHFDKQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHTQIHRGIEYACEVCGFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLQDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQMFLCAQCGKKFATNHALKLHGRKHTGERPYECMVCSKAFARSAALRVHKLTHTGERPRSTIAETSLGQGRNDRVQFQVTVPASSPTIQNSMSLKDEIYHDENSQRTVRDNEDEVNDSSFTLGREVVDDSIVDSVKTVLVPVRDPVTKEIKNMLIPIEVRDESGLNIVKSVLIPFPAEDGSISYEIKKVEVPIKSELSLSPKKKTEKKILLTNKDRSKQVNCKKKEEKENEEKREASLEKRTRSPEREKKVEKKTEKVSELELDSISIDVSKEEVDQILDTLKNICPFCQKCFRDEDQMQKHVLKTHKKPYNCDKCHKGYFSDFTLEEHQKTHDVVLFYQCSICQMQYKTAIGLKNHKIREHSDINPKFTCYYCEKRFKLKLDLNLHIHRSHMNVTYICRFCGMAVKNIVHHELKHEKNKKTSYLHHCSICSSKFKAWNSLENHLLMKHKAPTEGLGMLRTLCEKKFQSRSDFYHHVFSQSEAKQHKCVICDKTFASEYNLRNHVALHSHTYLCSHCGKNFTTKYSLKLHLRKHTGERPYQCKICLKTFARSASLKLHTVTHTGEKPYMCDLCGQSFTQRGSMMTHRRKHPGSHPPPPPLILNKLENNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00228809;
- 90% Identity
- iTF_00226053;
- 80% Identity
- -