Basic Information

Insect: Bombus sibiricus
Gene Symbol: -
Assembly: GCA_014737505.1
Location: JACXIM010000175.1:5023644-5028006[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00013 0.015 16.1 3.2 1 23 91 113 91 113 0.98

2 18 8.8e-07 9.8e-05 23.0 0.6 1 23 119 141 119 141 0.98

3 18 0.00043 0.048 14.5 1.7 1 23 146 169 146 169 0.97

4 18 4.1e-05 0.0045 17.7 0.5 1 23 175 197 175 197 0.97

5 18 6.6e-05 0.0074 17.1 0.2 1 23 203 226 203 226 0.97

6 18 5.9e-07 6.7e-05 23.5 0.5 1 23 236 258 236 258 0.96

7 18 5.4e-05 0.006 17.3 1.8 1 23 262 284 262 284 0.95

8 18 1.9e-05 0.0021 18.8 0.1 1 23 290 312 290 312 0.98

9 18 0.00015 0.017 15.9 2.5 3 23 551 572 550 572 0.96

10 18 0.0046 0.51 11.3 3.7 1 23 576 598 576 598 0.98

11 18 0.00094 0.11 13.4 1.9 1 23 604 627 604 627 0.96

12 18 0.0022 0.24 12.3 3.8 1 23 634 657 634 657 0.97

13 18 0.0019 0.21 12.5 3.8 1 23 691 714 691 714 0.95

14 18 0.14 16 6.6 0.2 5 21 727 743 726 744 0.90

15 18 1e-05 0.0011 19.6 1.0 1 23 751 773 751 773 0.95

16 18 1.5e-06 0.00016 22.3 4.4 1 23 777 799 777 799 0.96

17 18 2.5e-06 0.00028 21.5 1.0 1 23 805 827 805 827 0.99

18 18 1.7e-06 0.00018 22.1 1.2 1 23 833 855 833 855 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00013	0.015	16.1	3.2	1	23	91	113	91	113	0.98
2	18	8.8e-07	9.8e-05	23.0	0.6	1	23	119	141	119	141	0.98
3	18	0.00043	0.048	14.5	1.7	1	23	146	169	146	169	0.97
4	18	4.1e-05	0.0045	17.7	0.5	1	23	175	197	175	197	0.97
5	18	6.6e-05	0.0074	17.1	0.2	1	23	203	226	203	226	0.97
6	18	5.9e-07	6.7e-05	23.5	0.5	1	23	236	258	236	258	0.96
7	18	5.4e-05	0.006	17.3	1.8	1	23	262	284	262	284	0.95
8	18	1.9e-05	0.0021	18.8	0.1	1	23	290	312	290	312	0.98
9	18	0.00015	0.017	15.9	2.5	3	23	551	572	550	572	0.96
10	18	0.0046	0.51	11.3	3.7	1	23	576	598	576	598	0.98
11	18	0.00094	0.11	13.4	1.9	1	23	604	627	604	627	0.96
12	18	0.0022	0.24	12.3	3.8	1	23	634	657	634	657	0.97
13	18	0.0019	0.21	12.5	3.8	1	23	691	714	691	714	0.95
14	18	0.14	16	6.6	0.2	5	21	727	743	726	744	0.90
15	18	1e-05	0.0011	19.6	1.0	1	23	751	773	751	773	0.95
16	18	1.5e-06	0.00016	22.3	4.4	1	23	777	799	777	799	0.96
17	18	2.5e-06	0.00028	21.5	1.0	1	23	805	827	805	827	0.99
18	18	1.7e-06	0.00018	22.1	1.2	1	23	833	855	833	855	0.99

Sequence Information

Coding Sequence: ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAGTGGGACGCGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCATATCGTCAGAACCATCGCCAGAGCAAGTGAATCTTTCGTCTGATAGAAAAGATCGTACCTCGAAGGAGCCAAATTACGTTACAAATTCTGATAACGATTCACTGACAAATTCATCTACAAAGAGGAGGAAGAATAAAAGATTCGAAGATCAAGAACAATACATCTGCTCCACCTGCAAGTTACATTTTGACAGACAAGGAGACTACAAGCGTCACATGATCAAGCACAGCGATCTTCGTCCTTACAAGTGCGAAATCTGCGACAAGGCGTTTAAACGTTCCTCAGAGGTGTCCAACCACACTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGGTTTTACCACGATAAATAAATTCTCTTTAAGAATGCATCATCGTCGAGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTAGGCAGAAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAATCCTACTTGGTAGCACACAAACGGGTAATTCATAGAATTCAAAAAAGCGCGCCGAAGGAGTTCCAGTGCAATATCTGTAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACATTGGTCTACACTCGCAGATGTTCCTGTGCGCCCAGTGCGGCAAAAAATTCGCAACCAATCACGCTTTGAAGCTTCACGGTCGAAAACACACAGGCGAGAGACCTTATGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCGCTCAGAGTGCATAAATTAACACACACAGGCGAGAGGCCGAGGTCTACGATCGCAGAAACGTCCCTGGGCCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATACAGAATTCCATGTCCTTGAAAGATGAAATATATCACGACGAGAACAGTCAAGGGACAGTCAGAGACGATGAAGACGAAGTTAACGATAGTAGTTCCACTTTAGGAAGAGAAGTAGTTGATGATTCGATCGTGGACTCGATGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGGTACCTGTTGAAGTGAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTCCAGCAGAGGATGGATCGATGTCTTACGAAATTAAAAAGGTCATGGTACCTATCAAGTCGGAATTGAGTTTACGGCCAAAAAAGAAAACTGAGAAAAAAACTTTATTAACAAATAAAGCAAGAAGTAAGCAGGTGAATTGTAAGAAAGAAGAGGAGAAAGAAAACGAAGAGAAACAGGAGACGTCATTGGAAAGAAGGACGAGGAGCCTAGAAAGGGAAAAGAAGAAACAAAAGATAAAGAAGGTAAAAAAGGAAACAGAGAAAGTATCAGAGTTAGAACTGGACAGTATATCGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAAAACATTTGCCCATTCTGTCAGAAGTGTTTCAAAGATGAGGATCAAATGCAAAAGCACGTCCTCAAGACACATAAGAAACCATATAATTGCGACAAGTGTCATAAAGGCTACTTTTCCGACTTTACTCTAGAAGAACACCAGAAAACACACGATGTGGTTTCGTTTTATCAGTGTTCCATCTGTCAGATGCAGTATAAAACCGCGACAGGATTAAAGAATCATAAGACCCGTAAACACAGTGACATAGACCCTAAATTTACATGTTATTACTGTGAGAAGCGATTCAAATTAAAATTAGACCTAAACCTTCACATCCACAGATTGCACATGAACGTAACTTACATTTGCAGATTCTGTGGCATGGAAGTGAAGAATATCGTGCATCACGAACTGAAACACGAAAAGAACAAGGAAACCAGTTATCTGCATCATTGCAGTATCTGTACTAGGAAATTCAAAGCGTGGAACAGTTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTAAGGAAGGTTTAGACATGTTAAGGACGCTGTGTGAAAAGAAATTTCAATCCAGAAGTGATTTTTATCGTCATGTGCTTAGCCAATCGAAGGCCAAGCAGCACAAGTGTGTCATTTGCGACAAAAAATTTGCTTCTGAGTATAATCTTCGTAATCACGTCGCTCTACACTCGCATACTTACCTGTGTTCCCACTGTGGCAAAAATTTTACCACGAACTACTCGTTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAGTGTAAAATATGTTTAAAGACATTTGCCAGATCAGCCTCGCTTAAACTACATACTTTAACTCACACTGGTGAAAGACCATATGTGTGTGATTTATGTGGTCGAAGTTTCACTCAGAGAGGAAGCATGATGACGCATCGTCGTAAGCATCCTGGAAATCATCCGCCGTCTCGTCCTTTGATACTAAATAAACTCGAAAATAACGAACATTAA
Protein Sequence: MLKNHVVDCRTLGVVQWDAKSKDCGDQAIKIFESRSPISSEPSPEQVNLSSDRKDRTSKEPNYVTNSDNDSLTNSSTKRRKNKRFEDQEQYICSTCKLHFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHTQIHRGIEYACEVCGFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHIGLHSQMFLCAQCGKKFATNHALKLHGRKHTGERPYECMVCSKAFARSAALRVHKLTHTGERPRSTIAETSLGQGRNDRVQFQVTVPASSPTIQNSMSLKDEIYHDENSQGTVRDDEDEVNDSSSTLGREVVDDSIVDSMKTVLVPVRDPVTKEIKNMLVPVEVRDESGLNIIKSVLIPFPAEDGSMSYEIKKVMVPIKSELSLRPKKKTEKKTLLTNKARSKQVNCKKEEEKENEEKQETSLERRTRSLEREKKKQKIKKVKKETEKVSELELDSISTDVSKEEVDQILDTLKNICPFCQKCFKDEDQMQKHVLKTHKKPYNCDKCHKGYFSDFTLEEHQKTHDVVSFYQCSICQMQYKTATGLKNHKTRKHSDIDPKFTCYYCEKRFKLKLDLNLHIHRLHMNVTYICRFCGMEVKNIVHHELKHEKNKETSYLHHCSICTRKFKAWNSLENHLLMKHKAPKEGLDMLRTLCEKKFQSRSDFYRHVLSQSKAKQHKCVICDKKFASEYNLRNHVALHSHTYLCSHCGKNFTTNYSLKLHLRKHTGERPYQCKICLKTFARSASLKLHTLTHTGERPYVCDLCGRSFTQRGSMMTHRRKHPGNHPPSRPLILNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228809;
90% Identity: iTF_00226053;
80% Identity: -