Bpyr018661.1
Basic Information
- Insect
- Bombus pyrosoma
- Gene Symbol
- -
- Assembly
- GCA_014825855.1
- Location
- CM026128.1:2633554-2637896[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00013 0.012 16.1 3.2 1 23 91 113 91 113 0.98 2 18 8.6e-07 8.2e-05 23.0 0.6 1 23 119 141 119 141 0.98 3 18 0.00042 0.04 14.5 1.7 1 23 146 169 146 169 0.97 4 18 2.8e-05 0.0027 18.2 0.7 1 23 175 197 175 197 0.97 5 18 6.5e-05 0.0062 17.1 0.2 1 23 203 226 203 226 0.97 6 18 1.7e-06 0.00016 22.0 0.5 1 23 236 258 236 258 0.94 7 18 8.1e-05 0.0078 16.8 2.4 1 23 262 284 262 284 0.95 8 18 1.8e-05 0.0017 18.8 0.1 1 23 290 312 290 312 0.98 9 18 0.0018 0.17 12.5 1.9 3 23 545 566 544 566 0.96 10 18 0.0045 0.43 11.3 3.7 1 23 570 592 570 592 0.98 11 18 0.00055 0.053 14.1 1.2 1 23 598 621 598 621 0.96 12 18 0.015 1.5 9.6 7.5 1 23 628 651 628 651 0.97 13 18 0.0017 0.17 12.6 3.6 1 23 685 708 685 708 0.95 14 18 2.6 2.5e+02 2.6 0.5 5 20 721 736 720 738 0.89 15 18 1.5e-05 0.0015 19.0 2.3 1 23 745 767 745 767 0.96 16 18 2.4e-06 0.00023 21.6 4.2 1 23 771 793 771 793 0.96 17 18 1.2e-05 0.0012 19.3 1.6 1 23 799 821 799 821 0.98 18 18 8.9e-06 0.00086 19.8 1.8 1 23 827 849 827 849 0.98
Sequence Information
- Coding Sequence
- ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAGTGGGACGTGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCATATCGTCAGAACCATCGCCAGAGCAAGTGAATCCTTCGTCTGATAGAAAAGATCGTACCTCGAAGGAGCCAAATTACGTTACAAATTCTGATAACGATTCACTGACAAATTCATCTACAAAGAGGAGGAAGAATAAAAGATTCGAAGATCAAGAACAATACATCTGCTCCACCTGCAAGTTACATTTTGACAGACAAGGAGACTACAAGCGTCACATGATCAAGCACAGCGATCTTCGTCCTTACAAATGCGAAATCTGCGACAAAGCGTTTAAACGTTCCTCAGAGGTGTCCAACCACACTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGGTTTCACCACGATAAATAAATTCTCTTTAAGAATGCATCATCGTCGAGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGCAGGACCACAAGGCCAGTCATCTAGGCAGAAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAATCCTACTTGGTAGCACACAAACGGGTAATTCATAGAATTCAAAAAAGCGCGCCGAAGGAGTTCCAGTGCAATATCTGTAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGGTCTACACTCGCAGATGTTCCTGTGCGCTCAGTGCGGCAAAAAATTCGCAACCAATCACGCTTTGAAGCTTCACAGTCGAAAACACACAGGGGAGAGACCTTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCGCTCAGAGTGCATAAATTAACACACACAGGAGAGAGGCCGAGGTCTACGATCGCAGAAACGTTCCTGGGCCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCTAGTCCCACGATACAGAATTCCATGTCCTTGAAGGATGAAATATATCACGACGAGAACAGTCAAAGGACAGTCAGAGACAATGAAGACGAATTTAACGATAGTAGTTACACTTTAGGAAGAGAAGTAGTTGATGATTCGATCGTGGACTCGGTGAAAACTATTTTGGTGTCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGATACCTGTTGAAGTGAAGGACGAGTCTGGATTAAACATAATCAAAAGAGTATTAATTCCTTGTCCAGCAGAGGATGGATCGATATCTTACGAAATTAAAGAGGTCGTAGTACCTATCAAGTCGGAATTGAGTTTATTGCCAAAAAAGAAAACTGAGACAAAAACTTTATTAACAAATAAAGCTACAAGTAAGCAGGTGAATTGTAAGAAAAAAGAGGAGAAAGAAAACAAAGAGAAACGGGAGACGTCATTGGAAAAAAGGACGAGTAGCCCAGAAAGGGAAAAGATGGTAAAAAAGAAAACAGAGAAAGTATCAGAGTTAGAACTGGACAGTATATCGATAGATGTATCCAAGGAGGAAGTGGATGAAATATTGGACACTTTAAAAAACATTTGCCCATTCTGTCAGAAGTGTTTCGGAGACGAGAACCAAATGCAAAAACACGTCCTCAAGACACATAAGAAACCATATAATTGCGACAAGTGTCATAAAGGCTACTTCTCTGACTTTACTCTAGAAGAACACCAAAAAACACACGATGTGGTTTCGTTTTATCAGTGTTCCATCTGTCAGATGCAGTATAAAACCGCGACAGGATTAAAGAATCATAAGACCCGTGAACACAGTGACATAAACCCAAAATTTACGTGTTATTACTGTAAGAAGCAATTCAAATTAAAATTAGACCTAAACCATCACATCCACAAATCGCACATGAACGTAACTTACATTTGTAGATTCTGTGGCATGGAAGTGAAGAACATCGTGCATCACGAACTAAAACACGAAAAGAACAAGGAAACCAGTTATCTGCATCATTGCAGTATCTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAACTCCTGAGAAAGGATTAGACATGTTAAGGACGCTGTGTGAAAAGAAATTTCAATCCAGAAATGATTTTTATCATCATGCGCTTAGCCAATCGGAGGCCAAGCAGCACAAGTGTGTCATTTGTGACAAAACATTTGCTTCTGAGTGTAATCTTCGTAATCACATCGCTCTACACTCGCATACTTACCTGTGTTCCCACTGTGGCAAGAATTTTACCACGAACTACATGCTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAGTGTAAAATATGTTTAAAGACATTTGTCAGATCAACCTCGCTTAAACTACATACTGTAACTCACACTGGTGAAAAACCATATATGTGTGATTTATGTGGTCAAAGATTCACTCAGAAAGGAAGCATGATGACGCATCGTCGTAAGCATCCTGGAAGTCATCCGTCGCCTCCTCCTTTGAACCTAAATAAACTCGAAAATAACGAACATTAA
- Protein Sequence
- MLKNHVVDCRTLGVVQWDVKSKDCGDQAIKIFESRSPISSEPSPEQVNPSSDRKDRTSKEPNYVTNSDNDSLTNSSTKRRKNKRFEDQEQYICSTCKLHFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHTQIHRGIEYACEVCGFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLQDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQMFLCAQCGKKFATNHALKLHSRKHTGERPYECMVCSKAFARSAALRVHKLTHTGERPRSTIAETFLGQGRNDRVQFQVTVPASSPTIQNSMSLKDEIYHDENSQRTVRDNEDEFNDSSYTLGREVVDDSIVDSVKTILVSVRDPVTKEIKNMLIPVEVKDESGLNIIKRVLIPCPAEDGSISYEIKEVVVPIKSELSLLPKKKTETKTLLTNKATSKQVNCKKKEEKENKEKRETSLEKRTSSPEREKMVKKKTEKVSELELDSISIDVSKEEVDEILDTLKNICPFCQKCFGDENQMQKHVLKTHKKPYNCDKCHKGYFSDFTLEEHQKTHDVVSFYQCSICQMQYKTATGLKNHKTREHSDINPKFTCYYCKKQFKLKLDLNHHIHKSHMNVTYICRFCGMEVKNIVHHELKHEKNKETSYLHHCSICSRKFKAWNSLENHLLMKHKTPEKGLDMLRTLCEKKFQSRNDFYHHALSQSEAKQHKCVICDKTFASECNLRNHIALHSHTYLCSHCGKNFTTNYMLKLHLRKHTGERPYQCKICLKTFVRSTSLKLHTVTHTGEKPYMCDLCGQRFTQKGSMMTHRRKHPGSHPSPPPLNLNKLENNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00228809;
- 90% Identity
- iTF_00226053;
- 80% Identity
- -