Basic Information

Insect: Bombus picipes
Gene Symbol: -
Assembly: GCA_014737485.1
Location: JACXIP010000011.1:12312449-12316794[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00014 0.014 16.1 3.2 1 23 91 113 91 113 0.98

2 19 9.1e-07 9.1e-05 22.9 0.6 1 23 119 141 119 141 0.98

3 19 0.00044 0.045 14.4 1.7 1 23 146 169 146 169 0.97

4 19 4.2e-05 0.0042 17.7 0.5 1 23 175 197 175 197 0.97

5 19 6.8e-05 0.0069 17.0 0.2 1 23 203 226 203 226 0.97

6 19 1.8e-06 0.00018 22.0 0.5 1 23 236 258 236 258 0.94

7 19 5.6e-05 0.0056 17.3 1.8 1 23 262 284 262 284 0.95

8 19 8.3e-06 0.00083 19.9 0.3 1 23 290 312 290 312 0.98

9 19 1.1e-06 0.00011 22.6 1.0 1 23 318 340 318 340 0.99

10 19 0.00015 0.015 15.9 2.4 3 23 587 608 586 608 0.96

11 19 0.003 0.31 11.8 3.7 1 23 612 634 612 634 0.99

12 19 0.00014 0.014 16.0 1.0 1 23 640 663 640 663 0.97

13 19 0.0028 0.29 11.9 4.1 1 23 670 693 670 693 0.97

14 19 0.0019 0.19 12.5 3.6 1 23 727 750 727 750 0.95

15 19 0.43 44 5.0 0.5 5 20 763 778 762 780 0.91

16 19 4.6e-06 0.00046 20.7 0.8 1 23 787 809 787 809 0.95

17 19 1.5e-06 0.00015 22.2 4.4 1 23 813 835 813 835 0.96

18 19 6.7e-06 0.00067 20.2 1.9 1 23 841 863 841 863 0.99

19 19 1.4e-05 0.0015 19.1 1.0 1 23 869 891 869 891 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00014	0.014	16.1	3.2	1	23	91	113	91	113	0.98
2	19	9.1e-07	9.1e-05	22.9	0.6	1	23	119	141	119	141	0.98
3	19	0.00044	0.045	14.4	1.7	1	23	146	169	146	169	0.97
4	19	4.2e-05	0.0042	17.7	0.5	1	23	175	197	175	197	0.97
5	19	6.8e-05	0.0069	17.0	0.2	1	23	203	226	203	226	0.97
6	19	1.8e-06	0.00018	22.0	0.5	1	23	236	258	236	258	0.94
7	19	5.6e-05	0.0056	17.3	1.8	1	23	262	284	262	284	0.95
8	19	8.3e-06	0.00083	19.9	0.3	1	23	290	312	290	312	0.98
9	19	1.1e-06	0.00011	22.6	1.0	1	23	318	340	318	340	0.99
10	19	0.00015	0.015	15.9	2.4	3	23	587	608	586	608	0.96
11	19	0.003	0.31	11.8	3.7	1	23	612	634	612	634	0.99
12	19	0.00014	0.014	16.0	1.0	1	23	640	663	640	663	0.97
13	19	0.0028	0.29	11.9	4.1	1	23	670	693	670	693	0.97
14	19	0.0019	0.19	12.5	3.6	1	23	727	750	727	750	0.95
15	19	0.43	44	5.0	0.5	5	20	763	778	762	780	0.91
16	19	4.6e-06	0.00046	20.7	0.8	1	23	787	809	787	809	0.95
17	19	1.5e-06	0.00015	22.2	4.4	1	23	813	835	813	835	0.96
18	19	6.7e-06	0.00067	20.2	1.9	1	23	841	863	841	863	0.99
19	19	1.4e-05	0.0015	19.1	1.0	1	23	869	891	869	891	0.99

Sequence Information

Coding Sequence: ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAGTGGGACGCGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCATATCGTCAGAACCATCGCCAGAGCAAGTGAATCCTTCGTCTAATAGAAAAGATCATACCTCGAAGGAGCCAAATTACGCTACAAATTCTGACAACGATTCACTGACAAATTCATCTACAAAGAGGAGGAAGAATAAAAGATTCGAAGATCAGGAACAATACATCTGCTCCACCTGTAAGTTACATTTTGACAGACAAGGAGACTACAAGCGTCACATGATCAAGCACAGTGATCTTCGTCCTTACAAATGCGAAATCTGCGACAAGGCGTTTAAACGTTCCTCAGAGGTGTCCAACCACACTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGGTTTCACCACGATAAATAAATTCTCATTAAGAATGCATCATCGTCGAGTTCACCAGCGTGATTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTAGGCAGAAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAATCCTACTTGGTAGCACACAAACGGGTGATTCATAGAATTCAAAAAAGCGCGCCGAAGGAGTTCCAGTGCAATATCTGCAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGGTCTACACTCGCAGATGTTCCTGTGCGCCCAGTGCGGTAAAAAATTCGCAACCAATCACGCTTTGAAGCTTCACGGTCGAAAACACACAGGGGAGAGACCTTACGAGTGTATGGTTTGCTCAAAATCTTTCGCCAGATCGGCCGCGCTCAGAGTGCATAAATTAACACACACGGGCGAGAGGCCGTACGTGTGTGATCTGTGCGGGCAGAGCTTTACTCAAAGAAGTAGTATGATGGTGCATCGACGAAAACACCCCGGAAGTCATCCTCCGCCTCCTCCTCTACTTCTTAGCAGACTCGAGAGCGATGGACAAACGTCCCTGGGCCAGGTTAGAAATGTTCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATACAGAATTCCATGTCCTTGAAAGATGAAATATATCACGACGAGAACAGTCAGACGACAGTCAGAGACATTGAAGGCGAAGTTAACGATAGTAGTTCTACTTTAGGAAGAGAAGTAGTTGATTCGATCGTGGACTCGGTGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATATTGGTACCTGTTGAAGTGAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTTCAGCAGAGGATGGATCGATCTCTTACGAAATTAAAAAGGTCATGGTACCTATCAAGTCGGAATTGAGTTTATCGCCAAAAAAGAAAACTGAGAAAAAGACTTTATTAACAAATAAAATTAGAAGTAAACAGATGAATTGTAAGAAAAAAGAGAAGAAAGAAAACGAAGAGAAACGGGAGACGTCATTGGAAAAAAGGACGAGGAGCCGAGAAAGGAAAAAGAAGAAACAAAAGAAAAAGAAGGTAGAAAAGAAAACAGAGAAAGTATTAGAGTTAGAACTGGACAGTATATCGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAGAACATTTGCCCATTCTGTCAGAAGTGTTTCAGAGACGAAGACCAAATGCAAAAGCACGTCCTCAAGACACATAAGAAACCATATAGTTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAGAAAACACACGATGTGGTTTCGTTTTATCAGTGTTCCATATGTCAGATGCAGTACAAAACCGCGACAGGATTAAAGAATCATCAGACCCGTGAACACAGTGACATAGCCCCCAAATTTACGTGTTATTACTGTGAGAAGCGATTCAAATTAAAATTAGACCTAAACCTTCACATCCACAGATCGCACATGAACATAACTTACATTTGCAGATTCTGTGGCATGGCAGTGAAGAATATCGTGCATCACGAACTAAAACACGAAAAGAGCAAGAAAACCAGTTATCTGCATCATTGCAGTATCTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTAAGGAAGGATTGGACATGTTAAGGACGCTGTGCGAAAAGAAATTTCAATCCAGAAGTGATTTTTATCATCATGTGCTTAACCAATCGGAGGCCAAGCAGCACAAGTGTGTCATTTGCGATAAAACATTTGCTTCTGAGTATAATCTTCGTAATCACGTCGCTCTACACTCGCATACTTACCTGTGTTCCCACTGTGGCAAGAATTTTACCACGAACTACTCGTTGAAGCTACATCTTCGAAAACACACTGGAGAACGGCCGTATCAGTGTAAAATATGTTTAAAGACATTTGCCAGATCAACCACGCTTAAACTACATACTTTAACTCACACTGGCGAAAGACCATATGTGTGTGATTTATGTGGTCAAAGTTACACTCAGAGAGGAAGCATGATGACGCATCGTCGTAAGCATCCTGGAAGTCATCCGCCGCCTCCTCCTTTGATACTAAATAAACTCGAAAATAATGAACATTAA
Protein Sequence: MLKNHVVDCRTLGVVQWDAKSKDCGDQAIKIFESRSPISSEPSPEQVNPSSNRKDHTSKEPNYATNSDNDSLTNSSTKRRKNKRFEDQEQYICSTCKLHFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHTQIHRGIEYACEVCGFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQMFLCAQCGKKFATNHALKLHGRKHTGERPYECMVCSKSFARSAALRVHKLTHTGERPYVCDLCGQSFTQRSSMMVHRRKHPGSHPPPPPLLLSRLESDGQTSLGQVRNVRVQFQVTVPASSPTIQNSMSLKDEIYHDENSQTTVRDIEGEVNDSSSTLGREVVDSIVDSVKTVLVPVRDPVTKEIKNILVPVEVRDESGLNIIKSVLIPFSAEDGSISYEIKKVMVPIKSELSLSPKKKTEKKTLLTNKIRSKQMNCKKKEKKENEEKRETSLEKRTRSRERKKKKQKKKKVEKKTEKVLELELDSISTDVSKEEVDQILDTLKNICPFCQKCFRDEDQMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQKTHDVVSFYQCSICQMQYKTATGLKNHQTREHSDIAPKFTCYYCEKRFKLKLDLNLHIHRSHMNITYICRFCGMAVKNIVHHELKHEKSKKTSYLHHCSICSRKFKAWNSLENHLLMKHKAPKEGLDMLRTLCEKKFQSRSDFYHHVLNQSEAKQHKCVICDKTFASEYNLRNHVALHSHTYLCSHCGKNFTTNYSLKLHLRKHTGERPYQCKICLKTFARSTTLKLHTLTHTGERPYVCDLCGQSYTQRGSMMTHRRKHPGSHPPPPPLILNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228809;
90% Identity: iTF_00224015; iTF_00218562; iTF_00228809;
80% Identity: -