Bwal013725.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus waltoni
Gene Symbol
-
Assembly
GCA_014737395.1
Location
JACXII010000055.1:1041225-1045616[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00022 0.017 15.4 4.0 1 23 93 115 93 115 0.98
2 18 3e-06 0.00023 21.3 0.5 1 23 121 143 121 143 0.97
3 18 0.001 0.08 13.3 2.0 1 23 148 171 148 171 0.97
4 18 4e-05 0.0032 17.7 0.5 1 23 177 199 177 199 0.97
5 18 6.6e-05 0.0052 17.0 0.2 1 23 205 228 205 228 0.97
6 18 1.7e-06 0.00014 22.0 0.5 1 23 238 260 238 260 0.94
7 18 5.3e-05 0.0042 17.3 1.8 1 23 264 286 264 286 0.95
8 18 1.8e-05 0.0014 18.8 0.1 1 23 292 314 292 314 0.98
9 18 0.00014 0.011 16.0 2.4 3 23 553 574 552 574 0.96
10 18 0.0029 0.23 11.9 3.7 1 23 578 600 578 600 0.99
11 18 0.00019 0.015 15.6 0.6 1 23 606 629 606 629 0.96
12 18 0.0014 0.11 12.8 3.2 1 23 636 659 636 659 0.97
13 18 0.0018 0.14 12.5 3.6 1 23 693 716 693 716 0.95
14 18 0.42 33 5.1 0.5 5 20 729 744 728 746 0.91
15 18 1.4e-06 0.00011 22.3 0.8 1 23 753 775 753 775 0.96
16 18 1.4e-06 0.00011 22.3 4.4 1 23 779 801 779 801 0.96
17 18 2.6e-06 0.0002 21.5 1.0 1 23 807 829 807 829 0.99
18 18 3.2e-06 0.00025 21.2 1.0 1 23 835 857 835 857 0.99

Sequence Information

Coding Sequence
ATGTTGAAAAATCACGTTGTTGATTGCAGAACACTCGGAGTCGTACAATGGGACGCGAAATCCAAAGACTGCGGCGACCACCAGGCCATCAAGATCTTCGAATCAAGATCACCTATATCGTCAGAACCATCGCCAGGGCAAGTGAATCCTTCGTCCGATAAAAGAGATCGCACCTCGAAGGAGCCAAATTACGTTACAAGTTCTGACAACGATTCGCTACTGACAAATTCATCTACAAAGAGGAAGAAGAACAAAAGATTCGAAGATCAAGAACAATACAACTGCTCCACCTGCAAGTTACATTTTGACAGACAAGGAGACTACAAGCGCCACATGATCAAGCACAGCGATCTTCGTCCTTACAAGTGCGAAATCTGCGACAAAGCGTTTAAACGTTCCTCAGAGGTGTCCAACCACAGTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGATTTCACCACGATAAATAAATTCTCTTTAAGAATGCATCATCGTCGAGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTAGGCAGGAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAATCCTACTTGGTGGCGCACAAACGGGTAATTCATAGAATTCAAAAAAGCGCGCCAAAGGAGTTCCAGTGCAACATCTGCAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGGCCTACACTCGCAGATATTTCTGTGCGCCCAGTGCGGAAAGAAGTTCGCAACCAATCACGCTCTGAAGCTTCACGGCCGGAAACACACAGGGGAGAAACCGTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCACTCAGAGTGCATAAATTAACACACACGGGCGAGAGACCGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTGCAGCTTCCAGTCCCGCGGTACAGCATTCGACGTCCTTGAAAGTTGAAATAGATCACGACGAGGACAGTCAGAGGACAGTGAAAGACAATGAAGACGAAGTTAACGGTAGTAGCTCCTCTTTAGGAAGAAAAATAGTCGATGATTCGATGGTGGACTCGGTGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGGTACCTGTTGAAGTGAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCATTTCAAGAAGAGGATGGATCGATGTCTTACGAAATTAAAAAGGTCACGGTACCTATCAAATCGGAATTGAGCTTACCGCGAAAAAGGAAAACTGTAAAAAGAACTTTACTGACGAATAAAGCTAGAAGTAAACAGGTGAATTGTAAGAAAAAAGAGGAGAGAGGAAACGAAGAGAAACAGAAGACGTCGTTGGAAATAATGGCGAGTAGTCGAGAAAGGAAAGAGATGAAACAAAAGGAAAAGAAGGTAGAAAAGGAAACAGAGAAAGTATCGAAGTTAGAACTAGGCAGTATGTCAGCAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAGAACATTTGTCCATTCTGTCAGAAATGTTTCAGAGACGAGGACCAAATGCAAAAGCACGTCCTTAAGACACATAAGAAACCATATAGTTGCGACAAGTGTCATAAGGGCTACTTCTCCGACTTTACTTTAGAAGAACACCAGAAAACGCACGATGTGGTTTCGTTTTATCAGTGTTCCATCTGTCAGATGCAGTACAAAACCGCGACAGGATTAAAGAATCATCAGGTCCGCGAACACAGTGACATGGATCCCAAATTTACGTGTGACTACTGCGAGAAGCGATTCAAATTAAAATTAGACCTAAGCCTTCACATCCACAGATCGCACATGAACGTAACTCACATTTGCAGATTCTGTGGCATGGCTGTGAAGAATATCGCGCATCACGAACTAAAACACGAAAAGAACAAGAATGCCAGTTCTCTGCATCATTGCAGTATCTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTAAGGAAGGATTGGACATGTTAAGGACGCTGTGTGAGAAGAAATTTCAATCCAGAAGTGACTTTTATCATCACGTGCTTAACCAATCGGAGGCCAAGCAGCACAAGTGTGTCATTTGCGACAAAACATTTGCTTCCGAGTATAATCTTCGTAATCACATCGCTCTACACTCGCATACTTACCTGTGTTCCCATTGTGGCAAGAATTTTACCACGAACTACTCGTTGAAGCTGCACCTTCGAAAACACACTGGCGAACGACCGTATCAGTGTAAAATATGTTTAAAGACGTTTGCCAGATCAGCCTCGCTTAGACTACATACTCTAACACACACTGGTGAAAAACCGTATGTGTGTGATTTATGTGGTCAAAGTTTCACTCAGAGAGGAAGCATGATGACGCACCGTCGTAAACATCCCGGAAGTCATCCGCCGCCTCCTCCTCTGATACTCAATAAACTCGAAAATAACGAACATTGA
Protein Sequence
MLKNHVVDCRTLGVVQWDAKSKDCGDHQAIKIFESRSPISSEPSPGQVNPSSDKRDRTSKEPNYVTSSDNDSLLTNSSTKRKKNKRFEDQEQYNCSTCKLHFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHSQIHRGIEYACEVCDFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQIFLCAQCGKKFATNHALKLHGRKHTGEKPYECMVCSKAFARSAALRVHKLTHTGERPRSTIAETSLDQGRNDRVQFQVTVAASSPAVQHSTSLKVEIDHDEDSQRTVKDNEDEVNGSSSSLGRKIVDDSMVDSVKTVLVPVRDPVTKEIKNMLVPVEVRDESGLNIIKSVLIPFQEEDGSMSYEIKKVTVPIKSELSLPRKRKTVKRTLLTNKARSKQVNCKKKEERGNEEKQKTSLEIMASSRERKEMKQKEKKVEKETEKVSKLELGSMSADVSKEEVDQILDTLKNICPFCQKCFRDEDQMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQKTHDVVSFYQCSICQMQYKTATGLKNHQVREHSDMDPKFTCDYCEKRFKLKLDLSLHIHRSHMNVTHICRFCGMAVKNIAHHELKHEKNKNASSLHHCSICSRKFKAWNSLENHLLMKHKAPKEGLDMLRTLCEKKFQSRSDFYHHVLNQSEAKQHKCVICDKTFASEYNLRNHIALHSHTYLCSHCGKNFTTNYSLKLHLRKHTGERPYQCKICLKTFARSASLRLHTLTHTGEKPYVCDLCGQSFTQRGSMMTHRRKHPGSHPPPPPLILNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00228809;
90% Identity
-
80% Identity
-