Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026164.1:3080489-3084875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9e-05 0.0027 18.2 1.7 1 23 91 113 91 113 0.98

2 18 1.2e-06 0.00011 22.5 0.6 1 23 119 141 119 141 0.98

3 18 0.00043 0.039 14.5 1.7 1 23 146 169 146 169 0.97

4 18 4.1e-05 0.0037 17.7 0.5 1 23 175 197 175 197 0.97

5 18 6.7e-05 0.006 17.1 0.2 1 23 203 226 203 226 0.97

6 18 1.8e-06 0.00016 22.0 0.5 1 23 236 258 236 258 0.94

7 18 5.4e-05 0.0049 17.3 1.8 1 23 262 284 262 284 0.95

8 18 1.9e-05 0.0017 18.8 0.1 1 23 290 312 290 312 0.98

9 18 0.00015 0.013 16.0 2.4 3 23 551 572 550 572 0.96

10 18 0.0012 0.11 13.1 3.6 1 23 576 598 576 598 0.99

11 18 0.0002 0.018 15.6 1.2 1 23 604 627 604 627 0.97

12 18 0.0036 0.33 11.6 5.1 1 23 634 657 634 657 0.97

13 18 0.0018 0.16 12.5 3.6 1 23 691 714 691 714 0.95

14 18 0.34 31 5.4 0.6 6 21 728 743 727 744 0.91

15 18 4.5e-06 0.0004 20.7 0.8 1 23 751 773 751 773 0.95

16 18 1.5e-06 0.00013 22.3 4.4 1 23 777 799 777 799 0.96

17 18 2.8e-06 0.00025 21.4 2.5 1 23 805 827 805 827 0.99

18 18 3.3e-06 0.0003 21.2 1.0 1 23 833 855 833 855 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9e-05	0.0027	18.2	1.7	1	23	91	113	91	113	0.98
2	18	1.2e-06	0.00011	22.5	0.6	1	23	119	141	119	141	0.98
3	18	0.00043	0.039	14.5	1.7	1	23	146	169	146	169	0.97
4	18	4.1e-05	0.0037	17.7	0.5	1	23	175	197	175	197	0.97
5	18	6.7e-05	0.006	17.1	0.2	1	23	203	226	203	226	0.97
6	18	1.8e-06	0.00016	22.0	0.5	1	23	236	258	236	258	0.94
7	18	5.4e-05	0.0049	17.3	1.8	1	23	262	284	262	284	0.95
8	18	1.9e-05	0.0017	18.8	0.1	1	23	290	312	290	312	0.98
9	18	0.00015	0.013	16.0	2.4	3	23	551	572	550	572	0.96
10	18	0.0012	0.11	13.1	3.6	1	23	576	598	576	598	0.99
11	18	0.0002	0.018	15.6	1.2	1	23	604	627	604	627	0.97
12	18	0.0036	0.33	11.6	5.1	1	23	634	657	634	657	0.97
13	18	0.0018	0.16	12.5	3.6	1	23	691	714	691	714	0.95
14	18	0.34	31	5.4	0.6	6	21	728	743	727	744	0.91
15	18	4.5e-06	0.0004	20.7	0.8	1	23	751	773	751	773	0.95
16	18	1.5e-06	0.00013	22.3	4.4	1	23	777	799	777	799	0.96
17	18	2.8e-06	0.00025	21.4	2.5	1	23	805	827	805	827	0.99
18	18	3.3e-06	0.0003	21.2	1.0	1	23	833	855	833	855	0.99

Sequence Information

Coding Sequence: ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAGTGGGACGCGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCATATCGTCAGAATCATCGCCAGAGCAAGCGAATCCTTCGTCCGATAGAAAAGATCGTACATCGAAGGAGCCAAATTACGTTACAAATTCTGACAACGATTCACTGACAAATTCATCTACAAAGAGGAGGAAGAATAAAAGATTCGAAGATCAAGAACAATACATCTGCTCCACCTGCAAGTTACGTTTTGACAGACAAGGAGATTACAAGCGTCACATGATTAAGCACAGCGATCTTCGTCCTTACAAATGTAAAATCTGCGACAAGGCGTTTAAACGTTCCTCAGAGGTGTCCAACCACGCTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGGTTTCACCACGATAAATAAATTCTCTTTAAGAATGCATCATCGTCGAGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCACCTAGGCAGAAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAATCCTACTTGGTAGCACACAAACGGGTAATTCATAGAATTCAAAAAAGCGCGCCGAAGGAGTTCCAGTGCAATATCTGCAACAAGAGTTTCGCTACCGAACAGAATCTTCGTAATCACGTTGGTCTGCACTCGCAGATGTTCCTGTGCGCCCAGTGCGGCAAAAAATTCGCAACCAATCACGCTTTGAAGCTTCACGGTCGAAAACACACAGGGGAGAGACCTTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCGCTCAGAGTGCATAAATTAACACACACGGGCGAGAGACCGAGGTGTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATACAGAATTCCATGTCCTTGAAAGTTGAAATAGATCACGACGAGAACAGTCAGACGACAGTCAAAGACGATGAAGACGAAGTTAACGATAGTAGTTCCACTTTAGGAAGAGAAATAGATGATGATTCGATCGTGGACTCGGTGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGGTACCTGTTGAAGTGAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTCCAGCAGAGGATGGATCGATGTCTTACGAAATTAAAAAGGTCATTGTACCTATCAAGTTGGAATTGAGTTTATCACCAAAAAAGAAAACCGAGAAAAGAACTGCATTAACAAGTAAAGTTAGAAATAAGCAGGTGAATTGTAAGAAAAAAGAGGAGAAAGAAAACGAAGAGAAACGGGAGACGTCATTGGGAAAAAGGACGAGGAACCGAGAAATGAAAAAGGAAGAACAAAACAAAAAGAAGGTAAAAAAGGAAACAGAGAAAGTATCGGAGTTAGAACTGGACAGTATATCGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAGAACATTTGCCCATTCTGTCAGAAGTGTTTCAGAGACGAAGATCAAATGCAAAAGCACGTCCTCAAGACACATAAGAAACCATATAGTTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAGAGAACACACGATGTGCTTTCGTTTTATCGGTGTTCCATCTGTCAGATGCAGTACAAAACCGCGACAGGATTAAAGAATCATCAGACCCGTGAACACAGTGACATAGATCCCAAATTTACCTGTTATTACTGTAAGAAGCGGTTCAAATTAAAATTAGACCTAAACCTTCACATTCACAGATCGCACATGAACACAACTTACATTTGCAGATTCTGTGGCATGGCAGTGAAGAATATCGTGTATCACGAATTAAAACACGAAAAGAACAAGAATATCAGTTCTCTGCATCATTGCAGTATCTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTAAAGAAGGATTAGACATGTTAAGGATACTGTGTGAAAAGAAATTTCAATCTAAAAGTGATTTTTATCATCATGTGCTTAAACAATCGGAAGCCAAGCAGCACAAGTGTGTCATTTGCGACAAAACATTTGCTTCTGAGTATAATCTTCGTAATCACGTCGCTCTACACTCGCATACTTACCTGTGTTCCCACTGTGGCAAGAATTTTACCACGAACTACTCGTTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAGTGTAAAATATGTTTCAAGACATTTGCCAGATCAACCTCGCTTAAGCTACATACGTTAACTCACACTGGTGAAAGACCATATGTGTGTGATTTATGTGGTCAAAGTTTCACTCAGAGAGGAAGCATGATGACACATCGTCGCAAGCATCCGGGAAGTCATCCGCCGCCTCCTCCTTTGAAACTAAATAAACTCGAAAATAACGAACATTAA
Protein Sequence: MLKNHVVDCRTLGVVQWDAKSKDCGDQAIKIFESRSPISSESSPEQANPSSDRKDRTSKEPNYVTNSDNDSLTNSSTKRRKNKRFEDQEQYICSTCKLRFDRQGDYKRHMIKHSDLRPYKCKICDKAFKRSSEVSNHAQIHRGIEYACEVCGFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQMFLCAQCGKKFATNHALKLHGRKHTGERPYECMVCSKAFARSAALRVHKLTHTGERPRCTIAETSLDQGRNDRVQFQVTVPASSPTIQNSMSLKVEIDHDENSQTTVKDDEDEVNDSSSTLGREIDDDSIVDSVKTVLVPVRDPVTKEIKNMLVPVEVRDESGLNIIKSVLIPFPAEDGSMSYEIKKVIVPIKLELSLSPKKKTEKRTALTSKVRNKQVNCKKKEEKENEEKRETSLGKRTRNREMKKEEQNKKKVKKETEKVSELELDSISTDVSKEEVDQILDTLKNICPFCQKCFRDEDQMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQRTHDVLSFYRCSICQMQYKTATGLKNHQTREHSDIDPKFTCYYCKKRFKLKLDLNLHIHRSHMNTTYICRFCGMAVKNIVYHELKHEKNKNISSLHHCSICSRKFKAWNSLENHLLMKHKAPKEGLDMLRILCEKKFQSKSDFYHHVLKQSEAKQHKCVICDKTFASEYNLRNHVALHSHTYLCSHCGKNFTTNYSLKLHLRKHTGERPYQCKICFKTFARSTSLKLHTLTHTGERPYVCDLCGQSFTQRGSMMTHRRKHPGSHPPPPPLKLNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228809;
90% Identity: iTF_00226053;
80% Identity: -