Basic Information

Insect: Bombus dahlbomii
Gene Symbol: -
Assembly: GCA_037178635.1
Location: CM074109.1:12144243-12148634[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.6e-05 0.0033 18.1 1.7 1 23 91 113 91 113 0.98

2 19 1.1e-06 0.0001 22.9 0.6 1 23 119 141 119 141 0.98

3 19 0.0013 0.12 13.2 2.0 1 23 146 169 146 169 0.97

4 19 5e-05 0.0046 17.6 0.5 1 23 175 197 175 197 0.97

5 19 8.1e-05 0.0076 17.0 0.2 1 23 203 226 203 226 0.97

6 19 2.1e-06 0.0002 21.9 0.5 1 23 236 258 236 258 0.94

7 19 6.6e-05 0.0062 17.3 1.8 1 23 262 284 262 284 0.95

8 19 2.3e-05 0.0021 18.7 0.1 1 23 290 312 290 312 0.98

9 19 1.3e-06 0.00012 22.6 1.0 1 23 318 340 318 340 0.99

10 19 0.00018 0.017 15.9 2.4 3 23 595 616 594 616 0.96

11 19 0.0036 0.34 11.8 3.7 1 23 620 642 620 642 0.99

12 19 7.8e-05 0.0073 17.0 1.1 1 23 648 671 648 671 0.97

13 19 0.0069 0.65 10.9 5.2 1 23 678 701 678 701 0.97

14 19 0.0015 0.14 13.0 3.7 1 23 735 758 735 758 0.96

15 19 0.44 41 5.2 0.5 5 21 771 787 770 788 0.90

16 19 5.5e-06 0.00051 20.7 0.8 1 23 795 817 795 817 0.95

17 19 1.2e-06 0.00011 22.8 5.7 3 23 823 843 821 843 0.97

18 19 3.4e-06 0.00032 21.3 1.4 1 23 849 871 849 871 0.99

19 19 4.3e-06 0.0004 21.0 1.6 1 23 877 899 877 899 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.6e-05	0.0033	18.1	1.7	1	23	91	113	91	113	0.98
2	19	1.1e-06	0.0001	22.9	0.6	1	23	119	141	119	141	0.98
3	19	0.0013	0.12	13.2	2.0	1	23	146	169	146	169	0.97
4	19	5e-05	0.0046	17.6	0.5	1	23	175	197	175	197	0.97
5	19	8.1e-05	0.0076	17.0	0.2	1	23	203	226	203	226	0.97
6	19	2.1e-06	0.0002	21.9	0.5	1	23	236	258	236	258	0.94
7	19	6.6e-05	0.0062	17.3	1.8	1	23	262	284	262	284	0.95
8	19	2.3e-05	0.0021	18.7	0.1	1	23	290	312	290	312	0.98
9	19	1.3e-06	0.00012	22.6	1.0	1	23	318	340	318	340	0.99
10	19	0.00018	0.017	15.9	2.4	3	23	595	616	594	616	0.96
11	19	0.0036	0.34	11.8	3.7	1	23	620	642	620	642	0.99
12	19	7.8e-05	0.0073	17.0	1.1	1	23	648	671	648	671	0.97
13	19	0.0069	0.65	10.9	5.2	1	23	678	701	678	701	0.97
14	19	0.0015	0.14	13.0	3.7	1	23	735	758	735	758	0.96
15	19	0.44	41	5.2	0.5	5	21	771	787	770	788	0.90
16	19	5.5e-06	0.00051	20.7	0.8	1	23	795	817	795	817	0.95
17	19	1.2e-06	0.00011	22.8	5.7	3	23	823	843	821	843	0.97
18	19	3.4e-06	0.00032	21.3	1.4	1	23	849	871	849	871	0.99
19	19	4.3e-06	0.0004	21.0	1.6	1	23	877	899	877	899	0.99

Sequence Information

Coding Sequence: ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGGTCGTACAGTGGGACGCGAAATCCAAAGACTGCGGTGACCAGGCCATCAAGATCTTCGAATCAAGATCACCCGTATCGTCAGAACCATCGCCGGAGCAAGTGAATCCTTCGTCTGATAGAAAAGATCGTATCTCGAAGGAGccaaattaccttacaaattCTGACAACGATTCACTGACAAATTCATCTACAAAGAGGaggaagaataaaagattCGAAGACCAAGAACAATACATCTGCTCCACCTGCAAGTTACGTTTTGACAGACAAGGAGACTACAAGCGTCACATGATCAAGCACAGCGATCTTCGTCCTTACAAATGCGAAATCTGCGACaaggcgtttaaacgttcttcgGAGGTGTCCAACCACACTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGATTTCAccacaataaataaattctctttaaGAATGCATCATCGTCGGGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTTGGCAGAAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAGTCCTACTTGGTAGCACACAAACGGGTAATTCATAGAATTCAAAAAAGCGCACCGAAGGAGTTCCAGTGCAATATCTGCAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGGTCTACATTCGCAGATGTTCCTGTGCGCCCAGTGCGGCAAAAAATTCGCAACCAATCACGCTTTGAAGCTTCACGGTCGAAAACACACAGGGGAGAGACCTTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCGCTCAGGGTGCATAAATTAACACACACGGGCGAGAGGCCATACGTGTGTGATCTATGCGGGCAGAGTTTTACTCAGAGAAGTAGCATGATGGTGCATCGACGAAAACACCCCGGAAGTCATCCTCCGCCCCCTCCACTGCTTCTTAGCAGACTCGAGAGCGATGGACATAAGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCGCGATACAGAATTCCATGTCCTTGAAAGTTGAAATAGATCACGACGAGAACAGTCAGTGGACAGTCAAAGACAACGAAGACAAAGTTAACGATAGTAGTTTCACTTTAGGAAGAGAAATAGTCGATGATTCGATCGTGGACTCGGTGAAAACCGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGGTACCTGTTGAAGTAAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTCCAGCAGAGGATGGATCGATGTCttacgaaattaaaaaggTCATTGTACCTATCAAGTCGGAATTGAGTTTATCgtcaaaaaagaaaacaggaaaaagaaccatattaacaaataaagcTGGAAGTAAGCAGGTGAATtgtaagaaaaaagagaagaaagaaaacgaagagaaacagGAGACGTTATTGGGAAAAAGGACGAGAAGccgagaaaggaaaaaggaggaacaaaagaaacagaagGTAGAAAAGGAAACAGAGAAAGTATCAGAGTTAAAACTGGACAGTATAACGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAGAACATTTGCCCATTCTGTCAGAAATGTTTCAGAGACGAGGACCAAATGCAAAAGCACGTCCTCAAGACGCATAAGAAACCATATAGTTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAGAAAACACACGATGTACTTTCGTTTTATCGGTGTTCCATCTGTCAGAAGCAGTACAAAACCGCGATAGGATTAAAGAATCATCAGACCCGTGAACACAGTGATATAGACCCCAAATTTAAGTGTTATTACTGTAAGAAgcaattcaaattaaaattagaccTAAACCTTCACATCCACAGATCGCACATGAATACAACTTACATTTGCAGATTCTGTGGCATGGCAGTGAAGAATATCGTGCATCACGAATTAAAACACGAAAAGAACAAGAGAATCAGTTCTCTACATCATTGCAATATTTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGaatcatttattaatgaaGCACAAAGCTCCTAAGGAAGGATTAGACATGTTAAGGACACTGtgtgaaaagaaatttcaatctaGAAGTGATTTTTATCATCATGTGCTTAGCCAATCGGAGGCCAAGCAGCACAAGTGTGTCATTTGCGACAAAACATTTGCTTCCGAGTATAATCTTCGTAACCACGTTGCTCTACATTCGCAAACTTGCCTGTGTCCCCATTGTGGCAAGACTTTTACCACGAACTATTCGTTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAgtgtaaaatatgtttaaagaCATTTGCCAGATCAAACTCGCTTAAAATACATACCTTAACTCACACTGGTGAAAGACCATATACGTGTGATTTATGTGGTCAAAGTTTCACTCAGAGAGGAAGCATGATGACGCATCGTCGTAAGCATCCCGAAAATCATCCGCCGCCTGCTCCTTTGAAACTAAATAAACTCGAAAATAACGaacattaa
Protein Sequence: MLKNHVVDCRTLGVVQWDAKSKDCGDQAIKIFESRSPVSSEPSPEQVNPSSDRKDRISKEPNYLTNSDNDSLTNSSTKRRKNKRFEDQEQYICSTCKLRFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHTQIHRGIEYACEVCDFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQMFLCAQCGKKFATNHALKLHGRKHTGERPYECMVCSKAFARSAALRVHKLTHTGERPYVCDLCGQSFTQRSSMMVHRRKHPGSHPPPPPLLLSRLESDGHKRSTIAETSLDQGRNDRVQFQVTVPASSPAIQNSMSLKVEIDHDENSQWTVKDNEDKVNDSSFTLGREIVDDSIVDSVKTVLVPVRDPVTKEIKNMLVPVEVRDESGLNIIKSVLIPFPAEDGSMSYEIKKVIVPIKSELSLSSKKKTGKRTILTNKAGSKQVNCKKKEKKENEEKQETLLGKRTRSRERKKEEQKKQKVEKETEKVSELKLDSITTDVSKEEVDQILDTLKNICPFCQKCFRDEDQMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQKTHDVLSFYRCSICQKQYKTAIGLKNHQTREHSDIDPKFKCYYCKKQFKLKLDLNLHIHRSHMNTTYICRFCGMAVKNIVHHELKHEKNKRISSLHHCNICSRKFKAWNSLENHLLMKHKAPKEGLDMLRTLCEKKFQSRSDFYHHVLSQSEAKQHKCVICDKTFASEYNLRNHVALHSQTCLCPHCGKTFTTNYSLKLHLRKHTGERPYQCKICLKTFARSNSLKIHTLTHTGERPYTCDLCGQSFTQRGSMMTHRRKHPENHPPPAPLKLNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228809;
90% Identity: iTF_00225374;
80% Identity: -