Basic Information

Insect: Bombus hortorum
Gene Symbol: -
Assembly: GCA_905332935.1
Location: HG995192.1:3234580-3242401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0019 0.21 12.4 0.4 2 23 182 204 181 204 0.91

2 27 0.49 52 4.8 0.3 1 23 216 239 216 239 0.95

3 27 0.054 5.8 7.9 3.5 1 23 252 275 252 275 0.93

4 27 6.1e-05 0.0065 17.1 5.9 1 23 281 303 281 304 0.95

5 27 0.013 1.4 9.8 0.3 3 23 311 332 309 332 0.94

6 27 0.00097 0.1 13.4 1.5 1 23 337 360 337 360 0.98

7 27 4.3e-07 4.6e-05 23.9 0.4 2 23 367 388 366 388 0.96

8 27 3.6e-06 0.00039 21.0 1.3 1 23 394 416 394 416 0.97

9 27 4.7e-05 0.005 17.5 1.0 1 23 422 444 422 444 0.98

10 27 0.0041 0.43 11.4 3.4 2 23 549 570 548 570 0.97

11 27 5.6e-05 0.006 17.2 1.9 1 23 572 595 572 595 0.96

12 27 0.0038 0.4 11.5 0.9 1 23 600 623 600 623 0.96

13 27 0.00042 0.045 14.5 2.2 1 23 629 652 629 652 0.95

14 27 0.0016 0.17 12.7 2.0 2 23 659 681 658 681 0.95

15 27 0.01 1.1 10.1 0.3 1 23 686 708 686 708 0.96

16 27 0.00092 0.098 13.4 0.5 3 23 716 735 715 735 0.98

17 27 8.3e-06 0.00088 19.9 0.1 1 23 741 763 741 763 0.97

18 27 0.00071 0.076 13.8 0.4 1 23 769 791 769 791 0.97

19 27 3.6e-06 0.00038 21.0 1.6 2 23 894 915 893 915 0.96

20 27 0.022 2.3 9.1 2.9 1 23 917 940 917 940 0.90

21 27 0.02 2.1 9.2 0.9 1 23 945 968 945 968 0.95

22 27 0.0041 0.44 11.4 0.3 1 23 974 997 974 997 0.94

23 27 0.0049 0.52 11.1 2.2 3 23 1005 1026 1003 1026 0.95

24 27 0.00063 0.067 13.9 3.2 1 23 1031 1053 1031 1053 0.97

25 27 2.5e-05 0.0027 18.3 0.3 2 23 1060 1081 1059 1081 0.97

26 27 2e-05 0.0022 18.6 0.1 1 23 1087 1109 1087 1109 0.98

27 27 0.00096 0.1 13.4 1.5 1 23 1115 1137 1115 1137 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0019	0.21	12.4	0.4	2	23	182	204	181	204	0.91
2	27	0.49	52	4.8	0.3	1	23	216	239	216	239	0.95
3	27	0.054	5.8	7.9	3.5	1	23	252	275	252	275	0.93
4	27	6.1e-05	0.0065	17.1	5.9	1	23	281	303	281	304	0.95
5	27	0.013	1.4	9.8	0.3	3	23	311	332	309	332	0.94
6	27	0.00097	0.1	13.4	1.5	1	23	337	360	337	360	0.98
7	27	4.3e-07	4.6e-05	23.9	0.4	2	23	367	388	366	388	0.96
8	27	3.6e-06	0.00039	21.0	1.3	1	23	394	416	394	416	0.97
9	27	4.7e-05	0.005	17.5	1.0	1	23	422	444	422	444	0.98
10	27	0.0041	0.43	11.4	3.4	2	23	549	570	548	570	0.97
11	27	5.6e-05	0.006	17.2	1.9	1	23	572	595	572	595	0.96
12	27	0.0038	0.4	11.5	0.9	1	23	600	623	600	623	0.96
13	27	0.00042	0.045	14.5	2.2	1	23	629	652	629	652	0.95
14	27	0.0016	0.17	12.7	2.0	2	23	659	681	658	681	0.95
15	27	0.01	1.1	10.1	0.3	1	23	686	708	686	708	0.96
16	27	0.00092	0.098	13.4	0.5	3	23	716	735	715	735	0.98
17	27	8.3e-06	0.00088	19.9	0.1	1	23	741	763	741	763	0.97
18	27	0.00071	0.076	13.8	0.4	1	23	769	791	769	791	0.97
19	27	3.6e-06	0.00038	21.0	1.6	2	23	894	915	893	915	0.96
20	27	0.022	2.3	9.1	2.9	1	23	917	940	917	940	0.90
21	27	0.02	2.1	9.2	0.9	1	23	945	968	945	968	0.95
22	27	0.0041	0.44	11.4	0.3	1	23	974	997	974	997	0.94
23	27	0.0049	0.52	11.1	2.2	3	23	1005	1026	1003	1026	0.95
24	27	0.00063	0.067	13.9	3.2	1	23	1031	1053	1031	1053	0.97
25	27	2.5e-05	0.0027	18.3	0.3	2	23	1060	1081	1059	1081	0.97
26	27	2e-05	0.0022	18.6	0.1	1	23	1087	1109	1087	1109	0.98
27	27	0.00096	0.1	13.4	1.5	1	23	1115	1137	1115	1137	0.98

Sequence Information

Coding Sequence: ATGAAAAAATGGCAGATCCTGGAGTTCGATGGGAAGCCGTACTACGCGTTTGTACCTGAAGACGACACGCCACTGGCTGAGGAGGATATTCCCGAACAGATAGACGAGTTAGGACACGAGGATGGAAAACAGAATCTCGTGAAAGTCGAATGTCTTTACAACGAAGATGAACTACAGTACGATTCGACGGACGAAAAATTATACGAGGATGAAGATCTTTTAAACAGAAGTGCAGAGCAGAAGGAAGAAGAAGATGTAAAACCGATAATTCTAAACGGCACGATTGACGAAGAGAACGATAAAACGATTGGAGATATTTATCAGGTCAAAGTTCAGGGTAGTATGGTCACTATAGAGAAGCTGACATCCGGTGACATCGAAGAGACGAAGGAAGTGGTGGAGTATCAAGAAGTGGATCACGAGGAGCAAGAGGAGCAGCAAGAGGTGGAATACCTGGAGGAAGAGATCTTGGAGTTGCCGAATAATCATGTGACACCAACGAAGACGCGTAGGAAAATTTCCAGAAGTCCGGGCAGTGCACTGAAATGCAAACTTTGCTCGGAGATGTTCAGCTCGGCCATCTCGTTCAGGAAACACGTGGCATGGACGCACAAGAAGAAGGTGTGCATACAGGAAGATGGCGCGTATATCTGCGCGGTTTGCGATTACAGGACGCTTAAGAAGAGTCTTTTCGCGGCTCACTTGGAAAGGAAGCACGAAACTTGGTCCAGGAAACGACCCAATAACATGTTATTCCCTTGCGCTGCCTGTGGCTTCGTGTGCAGATCCAAGCACTCGTTGCAATCGCACTTTATTAGAAAACACACCGATCGGTACGAGCATCAGTGCAAATTTTGTCCAAAGAAGTTCAAAGTGAAAGGCGACCTGACCAATCACATACGGTTCCATCATAAAGAAAAACCGATTAACTGTCCCGTGTGTGGAAAACTATGTCAGAATACTGGCTCTCTTTACGTACACCAGAAATGGGCACATTTTAAACCTAAGTACGAGTGTCATATATGCAAACGACGCATGGTCACACAGGAAAACCTCGACCAACATCTGCTAACGCAGCACGAGAAAAGGGAGAAGATAGTATGCGCCGAGTGCGGAAAAACGTTCACTAAGAAAGATTCTTTTAAAAGGCACATGGCAGTGCACACAGGTTGCAAGCCACATTCCTGTCTAATCTGCAACAAACCGTTCGCGAGGAGGTCTCAGCTGCGCCAACATTTGCTCATCCACACTGGGAAAAGGCCTTTCGTCTGCGACATTTGCGGCAAAGCGTTCACGCAGAAGCCTGGTCTGATATGTCATAGGAAAACTCATCCTGGACCTCATCCTCCTTTACCTGTGATGCCAATTGCGGATATCGTGAAAGAGTTCACCGAAGGTTACGTACAGGAGATAAGCGCGCGTGAAAACGAGGAGAGGATCGAGGAGGAAGCAATCTTGGATCCTCTGAGCGAAGAATTCAAGACCGACTCGCAGGCTCACTTACCGTTAGAGCTCCCCGAGGTATACGAGAATTGGATCGACAAAGAAAACTTCGAGATCATGTCCGCTAGCCAAGAGGAAACCGCAGTATCTCCTCAAAACAATCCCAGCCAACGATCCAAAAAGAAAACCTTGACTCGTCTAGAATGCGACCACTGTCGACGGAAGTTCTTGAAGAAGAGTAACTTGGCGGAGCATTTGAAGAAACACAGACACAAGTGTTCAGACTGTCCCAAGACTTTCAGACTTCGTCGATACCTAGCTTCTCACATAGAGAAGATCCATCGACGTCAAGTGTACGATTGCAGTGTTTGCGAATACAAAAGCAATAACAAGGGAACACTGAAGAATCACTACATTCGTCTGCACACGACTAGTTACAACTTCGCTTGCGACACTTGTGGCAAACAATTCAAGATAAAGAAAGCGTTGAACCATCACGTGAAACAGAATCATAGCGACGCGCCACCGATAGTGTGCGACGTTTGTGGCCACTTCAGCAAGAATCTTCATGCTCTCAAGGCTCATATGAAGTACAGACACTACAAGCCTGAGTTTATCTGCAGAATCTGCAGAAGAGGGATGACGACTCAAGAGAATTTGGAGCAACACTTAACCTGGCACGAGACCAGGGAGAAGGTGCTGTGCCCCACGTGTGGAAAGAGATTTCGAGGTCGGGATTTGGACTCTCATATGCGAGTGCATACAGGAGTCAAGCCTTTTCCTTGTCCTGTTTGTGGAAAGACATTCAGAAGGCAGACTGCCCAAGAGCAGCATGTTCTAATTCATACGGGAAAGAGACCGTATGTTTGCGATATCTGTGGGCAAGCGTTTGCTCAGAAACCTGGGCTGATTTGCCATAGGAAGCGCCATCCTGGACCTCTGCCTCCATTACCTGTCGTATCCATCAAAAATATCGTCACGGATTCTCCTGCACTGGACCCTCTTAATGGTAGCGACACGAATCCTCTGGAAGAACCTTGTTTCATCAAAATAGAAAACTCGTACTCTTTGGCAAAAGCGGAACGAAGGCGACAAAGGGAAAGAATCAGAAGAATGAACTTAAAAATTCGCACTGTAACATCCGTAGGTTGTACAGCGAAAAAGTTGAAAATCGAACCAAGTCGAACCAACAAAATTGAAGCAAGAATCTCGAAAAAGCAGACTGAACCTCTACTGGAGTGTGACTTCTGTGGCAAACGGTTCAACCGGAAGTCGTTTCTAGCGTCTCACATGAAACAACACAGACATCGCTGTAAAACTTGCAACCAAACATTCGGGCTAAGAAAAGACTTGAAACAGCACTCGGAGCAAGTTCATGGTCCTGTACTATATCCGTGCAGTATCTGTGAATATAAAAGCAACAACAGGTGGACGTTGAAGGATCATTTCATTCGAAAGCACACCAGCAGGTTCGACTATTCGTGCGCAGTCTGTGGAAAACAATTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAAATGCATAGCAACGCATCTCCAATTATTTGCACAGTTTGCGGTCACGCTTGCAAGAGCGTGCCTTCCTTGAAGTCTCACATGAAATACAAGCACTACAAGACTGCTTACCAGTGTAATTTGTGCAAACGTTGCATGACGACGCAGAAGAACCTGGAGCAACATCTGTTGTGGCACAAGAGGAAGGAGAAAGTGGTTTGCCAGACTTGTGGCAAGACTTTCGGTCAAAAGAGGGATCTGGACCTTCATTTGAGGATCCACGAAGGTATCAGGCCGTTCTCTTGCCCGGTTTGTGGCAAGAAGTTCCCGAGAAGAACTGCTCAGGAGCAACATATTCTGATACACACGGGTCAAAGACCGTATACTTGTGATATTTGTGGGCAGAAGTTTGCGCAAAAACCGGGACTGATCTGTCACAGGAAGCGACATCCTGGGCCTCTGCCACAGCTCCCTGTGATCTCCGTCAGAAAGATCATCGCGGATTTTACTCAGGGACTGAACGATGCCGCGATGGAGAAGAAGGAGAATTAG
Protein Sequence: MKKWQILEFDGKPYYAFVPEDDTPLAEEDIPEQIDELGHEDGKQNLVKVECLYNEDELQYDSTDEKLYEDEDLLNRSAEQKEEEDVKPIILNGTIDEENDKTIGDIYQVKVQGSMVTIEKLTSGDIEETKEVVEYQEVDHEEQEEQQEVEYLEEEILELPNNHVTPTKTRRKISRSPGSALKCKLCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHIRFHHKEKPINCPVCGKLCQNTGSLYVHQKWAHFKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEISARENEERIEEEAILDPLSEEFKTDSQAHLPLELPEVYENWIDKENFEIMSASQEETAVSPQNNPSQRSKKKTLTRLECDHCRRKFLKKSNLAEHLKKHRHKCSDCPKTFRLRRYLASHIEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTDSPALDPLNGSDTNPLEEPCFIKIENSYSLAKAERRRQRERIRRMNLKIRTVTSVGCTAKKLKIEPSRTNKIEARISKKQTEPLLECDFCGKRFNRKSFLASHMKQHRHRCKTCNQTFGLRKDLKQHSEQVHGPVLYPCSICEYKSNNRWTLKDHFIRKHTSRFDYSCAVCGKQFKIKNDMVQHAKQMHSNASPIICTVCGHACKSVPSLKSHMKYKHYKTAYQCNLCKRCMTTQKNLEQHLLWHKRKEKVVCQTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPQLPVISVRKIIADFTQGLNDAAMEKKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218561; iTF_01069109; iTF_01067746; iTF_00216534; iTF_00983097; iTF_00982423; iTF_01539744;
90% Identity: iTF_00216534;
80% Identity: -