Basic Information

Insect: Bombus dahlbomii
Gene Symbol: -
Assembly: GCA_037178635.1
Location: CM074109.1:12173601-12181487[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0024 0.23 12.3 0.4 2 23 227 249 226 249 0.91

2 27 0.6 56 4.8 0.3 1 23 261 284 261 284 0.95

3 27 0.067 6.3 7.8 3.5 1 23 297 320 297 320 0.93

4 27 7.5e-05 0.007 17.1 5.9 1 23 326 348 326 349 0.95

5 27 0.017 1.6 9.7 0.3 3 23 356 377 354 377 0.94

6 27 0.0012 0.11 13.3 1.5 1 23 382 405 382 405 0.98

7 27 5.4e-07 5e-05 23.8 0.4 2 23 412 433 411 433 0.96

8 27 4.5e-06 0.00042 20.9 1.3 1 23 439 461 439 461 0.97

9 27 5.9e-05 0.0055 17.4 1.0 1 23 467 489 467 489 0.98

10 27 0.0051 0.47 11.3 3.4 2 23 594 615 593 615 0.97

11 27 7e-05 0.0065 17.2 1.9 1 23 617 640 617 640 0.96

12 27 0.0047 0.43 11.4 0.9 1 23 645 668 645 668 0.96

13 27 0.00053 0.049 14.4 2.2 1 23 674 697 674 697 0.95

14 27 0.002 0.18 12.6 2.0 2 23 704 726 703 726 0.95

15 27 0.013 1.2 10.1 0.3 1 23 731 753 731 753 0.96

16 27 0.0011 0.11 13.4 0.5 3 23 761 780 760 780 0.98

17 27 7.8e-06 0.00073 20.2 0.1 1 23 786 808 786 808 0.97

18 27 0.00089 0.082 13.7 0.4 1 23 814 836 814 836 0.97

19 27 5.4e-05 0.005 17.5 0.7 2 23 939 960 938 960 0.96

20 27 0.02 1.8 9.5 2.4 1 23 962 985 962 985 0.90

21 27 0.025 2.3 9.2 0.9 1 23 990 1013 990 1013 0.95

22 27 0.0051 0.47 11.3 0.3 1 23 1019 1042 1019 1042 0.94

23 27 0.006 0.56 11.1 2.2 3 23 1050 1071 1048 1071 0.95

24 27 0.00078 0.073 13.9 3.2 1 23 1076 1098 1076 1098 0.97

25 27 3.1e-05 0.0029 18.3 0.3 2 23 1105 1126 1104 1126 0.97

26 27 2.5e-05 0.0023 18.6 0.1 1 23 1132 1154 1132 1154 0.98

27 27 0.0012 0.11 13.3 1.5 1 23 1160 1182 1160 1182 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0024	0.23	12.3	0.4	2	23	227	249	226	249	0.91
2	27	0.6	56	4.8	0.3	1	23	261	284	261	284	0.95
3	27	0.067	6.3	7.8	3.5	1	23	297	320	297	320	0.93
4	27	7.5e-05	0.007	17.1	5.9	1	23	326	348	326	349	0.95
5	27	0.017	1.6	9.7	0.3	3	23	356	377	354	377	0.94
6	27	0.0012	0.11	13.3	1.5	1	23	382	405	382	405	0.98
7	27	5.4e-07	5e-05	23.8	0.4	2	23	412	433	411	433	0.96
8	27	4.5e-06	0.00042	20.9	1.3	1	23	439	461	439	461	0.97
9	27	5.9e-05	0.0055	17.4	1.0	1	23	467	489	467	489	0.98
10	27	0.0051	0.47	11.3	3.4	2	23	594	615	593	615	0.97
11	27	7e-05	0.0065	17.2	1.9	1	23	617	640	617	640	0.96
12	27	0.0047	0.43	11.4	0.9	1	23	645	668	645	668	0.96
13	27	0.00053	0.049	14.4	2.2	1	23	674	697	674	697	0.95
14	27	0.002	0.18	12.6	2.0	2	23	704	726	703	726	0.95
15	27	0.013	1.2	10.1	0.3	1	23	731	753	731	753	0.96
16	27	0.0011	0.11	13.4	0.5	3	23	761	780	760	780	0.98
17	27	7.8e-06	0.00073	20.2	0.1	1	23	786	808	786	808	0.97
18	27	0.00089	0.082	13.7	0.4	1	23	814	836	814	836	0.97
19	27	5.4e-05	0.005	17.5	0.7	2	23	939	960	938	960	0.96
20	27	0.02	1.8	9.5	2.4	1	23	962	985	962	985	0.90
21	27	0.025	2.3	9.2	0.9	1	23	990	1013	990	1013	0.95
22	27	0.0051	0.47	11.3	0.3	1	23	1019	1042	1019	1042	0.94
23	27	0.006	0.56	11.1	2.2	3	23	1050	1071	1048	1071	0.95
24	27	0.00078	0.073	13.9	3.2	1	23	1076	1098	1076	1098	0.97
25	27	3.1e-05	0.0029	18.3	0.3	2	23	1105	1126	1104	1126	0.97
26	27	2.5e-05	0.0023	18.6	0.1	1	23	1132	1154	1132	1154	0.98
27	27	0.0012	0.11	13.3	1.5	1	23	1160	1182	1160	1182	0.98

Sequence Information

Coding Sequence: ATGAAAAAATGGCAAATCCTGGAATTCGACGGGAAGCCGTACTACGCGTTTGTACCTGAAGACGACACGCCACTAGCTGACGAGGATATTCCCGAACAGATAGACGAGATAGGACACGAGGATGAAAAACAGGATCTCGTCAAAGTCGAATGTCTTTACAACGAAGATGAACTACAGTACGATTCGACGGACGAGAAATTATACGAAGATGAAGATCTTTTAAACAGAAGTGCAGAGCacaaggaagaagaagaagaggaggaagatgTAAAACctataattttaaatggtACGATTGACGAAGAGAACGACAAAACGATTGGAGATATTTATCAGGTCAAAGTTCAGGGTAGTATGGTCACTATAGAGAAGCTGACATCCGGTGACATTGAAGAGACGAAGGAAGTGGTGGAGTATCAAGAAGTGGAACACGAGGAGCAAGAGGAGCAAGAAGAGCAAGAGGAGCAAGAGATGCAAGAGATGCAAGAGATGCAAGAGATGCAACAAGTGTATAACGATCAAGAGCAGTTGGAACAGATAGATCAAGTAGATCCGGATGATCCAGATCAGATAGAACAGGTGGAATACTTGGAGGAAGAAATGTTGGAGTTGCCGAATAATCATGTGACACCAACGAAGACGCGCAGGAAAGTTTCCAGAAGTCCGAGCAATGCACTGAAATGCAAACTTTGCTCGGAGATGTTCAGCTCGGCCATTTCCTTCAGGAAACATGTGGCATGGACGCACAAGAAGAAGGTGTGTATACAGGAGGATGGCGCGTATATCTGCGCGGTTTGCGATTACAGGACGCTTAAGAAGAGTCTCTTCGCGGCTCACTTGGAAAGGAAGCATGAAACTTGGTCCAGGAAACGACCCAATAACATGTTGTTCCCTTGCGCTGCCTGTGGCTTCGTGTGCAGATCGAAGCACTCGTTGCAATCGCACTTTATTAGAAAACACACCGATCGGTACGAGCATCAGTGCAAATTTTGTCCAAAGAAGTTCAAAGTGAAAGGCGACCTGACCAACCACATACGATTCCATCATAAAGAAAAACCGATTAACTGTCCCGTGTGTGGAAAACTATGCCAAAATACTGGCTCTCTTTACGTACACCAGAAATGGGCACATTTTAAACCTAAGTACGAGTGTCATATATGCAAAAGACGCATGGTCACGCAGGAAAATCTCGACCAACATCTGCTAACGCAGCACGAGAAAAGGGAGAAGATAGTATGCGCCGAATGCGGGAAAACCTTCACtaaaaaagattcttttaAAAGGCACATGGCAGTGCACACAGGGTGCAAACCACATTCCTGTCTAATCTGCAATAAACCATTCGCGAGGAGGTCTCAGCTACGCCAACATTTGCTCATCCACACTGGGAAGAGGCCTTTTGTTTGCGATATTTGTGGGAAAGCGTTCACTCAGAAACCCGGTCTGATCTGTCATAGGAAAACTCATCCTGGACCTCATCCTCCTTTACCTGTGATGCCAATTGCGGATATCGTGAAAGAGTTCACCGAAGGTTACGTACAGGAGATAAGCGCACGTGAAAACGAGGAGAGGATCGAGGAGGAAGCaATCTTGGATCCTTTGAGCGAAGAATTCAAGACCGACTCGCAGGCTCACTTACCGTTAGAGCTCCCCGAGGTATACGAGAATTGGATCGACAAAGAAAACTTCGAGATCGTGTCCGCTAGCCAAGAGGAAATCGCAGTATCTGCTCGAAACAATCCCAGTCAAcgatcgaaaaagaaaaccTTGACTCGTCTAGAATGCGACCACTGTCGACGAAAGTTCTTGAAGAAGAGTAACTTGGCGGAGCATTTGAAGAAACACAGACACAAGTGTTCAGACTGTCCGAAGACTTTCAGACTTCGTCGATACCTAGCTTCTCACATAGAGAAGATCCATCGACGTCAAGTGTACGATTGCAGTGTTTGCGAATACAAAAGCAATAACAAGGGAACACTGAAGAATCACTACATTCGTCTGCATACGACTAATTACAATTTCGCTTGCGACACTTGTGGCAAACAATTCAAGATAAAGAAAGCACTGAACCATCACGTGAAACAGAATCATAGCGACGCGCCACCGATAGTGTGCGACGTTTGCGGTCACTTCAGCAAGAATCTTCATGCTCTCAAGGCTCATATGAAGTACAGACACTATAAGCCTGAGTTTATCTGCAGAATCTGCAGAAGAGGGATGACGACTCAAGAGAATTTGGAGCAACACTTAACCTGGCACGAGACCAGGGAAAAGGTGTTGTGCCCCACGTGTGGAAAGAGATTTCGAGGTCGGGATTTGGACTCTCATATGCGAGTGCATACAGGAGTCAAGCCTTATCCTTGTCCTGTTTGTGGAAAGACGTTCAGAAGGCAGACTGCCCAAGAGCAGCATGTTCTCATTCATACGGGAAAGAGACCGTATGTTTGCGATATCTGTGGGCAAGCGTTCGCTCAGAAACCTGGGCTGATCTGCCATAGAAAACGCCATCCTGGACCTCTGCCTCCGTTACCTGTCGTATCCATCAAGAATATCGTCACGGATTCTCCTGCGCTGGACCCTCTTAATGGTAGCGACACGAATCCTCTGGAAGAACCTTGTTTCATCAAAATAGAAAACTCGTACTCTTTGGCAAAAACGGAACAAAGGCGACAAAGGGAAAGAATCAGAAGAATGAACTTAAAAATTCACCCTGTAACGTCCGTAGGTTGTACAACGAGAAAGTTGAAAATCGAGCCAAGTCGAACCAACAGAATTGAAGCAAGAATCTCGAAAAAGCAAACCGAATCTCTGCTGGAGTGTGACTTCTGTGGCGAACAGTTCAACCGGAAGTCGTTTCTAGCGTTACACATGAAGCAACACAGGCATCGCTGTAAAACTTGCAACGAAACGTTCGGGCTAAGAAAAGACTTGAAACAGCACTCGGAGCAAGTTCATGGTCCTGTACTATATCCGTGCAGTATCTGTGAATATAAAAGCAACAACAGGTGGACGTTGAAGGATCATTTCATTCGAAAGCACACCAGCAGGTTCGACTATTCGTGTGCAGTCTGTGGAAAACAATTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAAATGCATAGCAACGCATCTCCAATTATTTGCACAGTTTGCGGTCACGCTTGCAAGAGCGTGCCTTCCTTGAAGTCTCACATGAAATATAAGCACTACAAGACTGCTTACCAGTGCAATTTGTGCAAACGTTGCATGACGACGCAGAAGAACCTGGAGCAACATCTGTTGTGGCACAAGAGGAAGGAGAAAGTGGTTTGCCAGACTTGTGGCAAGACTTTTGGTCAAAAGAGGGATCTGGACCTTCATTTGAGGATCCACGAAGGTATCAGGCCGTTCTCTTGCCCGGTTTGTGGCAAGAAGTTCCCGAGAAGAACTGCTCAGGAGCAACATATTCTGATACACACGGGTCAAAGACCGTATACTTGTGATATTTGTGGACAAAAGTTTGCGCAAAAACCGGGACTGATCTGTCACAGGAAGCGACATCCTGGACCTTTGCCACAGCTCCCTGTGATCTCCGTTAGAAAGATCATCGCGGATTTTACTCAGGGACTGAACGATGCCGCGATggagaagaaggagaattAG
Protein Sequence: MKKWQILEFDGKPYYAFVPEDDTPLADEDIPEQIDEIGHEDEKQDLVKVECLYNEDELQYDSTDEKLYEDEDLLNRSAEHKEEEEEEEDVKPIILNGTIDEENDKTIGDIYQVKVQGSMVTIEKLTSGDIEETKEVVEYQEVEHEEQEEQEEQEEQEMQEMQEMQEMQQVYNDQEQLEQIDQVDPDDPDQIEQVEYLEEEMLELPNNHVTPTKTRRKVSRSPSNALKCKLCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHIRFHHKEKPINCPVCGKLCQNTGSLYVHQKWAHFKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEISARENEERIEEEAILDPLSEEFKTDSQAHLPLELPEVYENWIDKENFEIVSASQEEIAVSARNNPSQRSKKKTLTRLECDHCRRKFLKKSNLAEHLKKHRHKCSDCPKTFRLRRYLASHIEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTNYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPYPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTDSPALDPLNGSDTNPLEEPCFIKIENSYSLAKTEQRRQRERIRRMNLKIHPVTSVGCTTRKLKIEPSRTNRIEARISKKQTESLLECDFCGEQFNRKSFLALHMKQHRHRCKTCNETFGLRKDLKQHSEQVHGPVLYPCSICEYKSNNRWTLKDHFIRKHTSRFDYSCAVCGKQFKIKNDMVQHAKQMHSNASPIICTVCGHACKSVPSLKSHMKYKHYKTAYQCNLCKRCMTTQKNLEQHLLWHKRKEKVVCQTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPQLPVISVRKIIADFTQGLNDAAMEKKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00220718;
90% Identity: iTF_00216534;
80% Identity: -