Basic Information

Insect: Bombus confusus
Gene Symbol: -
Assembly: GCA_014737475.1
Location: JACXIV010000015.1:2041141-2048942[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0012 0.091 13.1 0.3 2 23 205 227 204 227 0.91

2 27 0.49 38 4.8 0.3 1 23 239 262 239 262 0.95

3 27 0.055 4.2 7.8 3.5 1 23 275 298 275 298 0.93

4 27 6.1e-05 0.0047 17.1 5.9 1 23 304 326 304 327 0.95

5 27 0.014 1.1 9.7 0.3 3 23 334 355 332 355 0.94

6 27 0.00098 0.076 13.3 1.5 1 23 360 383 360 383 0.98

7 27 4.4e-07 3.4e-05 23.9 0.4 2 23 390 411 389 411 0.96

8 27 3.7e-06 0.00028 21.0 1.3 1 23 417 439 417 439 0.97

9 27 4.8e-05 0.0037 17.4 1.0 1 23 445 467 445 467 0.98

10 27 0.0041 0.32 11.4 3.4 2 23 569 590 568 590 0.97

11 27 5.7e-05 0.0044 17.2 1.9 1 23 592 615 592 615 0.96

12 27 0.0038 0.29 11.5 0.9 1 23 620 643 620 643 0.96

13 27 0.00043 0.033 14.5 2.2 1 23 649 672 649 672 0.95

14 27 0.0016 0.12 12.7 2.0 2 23 679 701 678 701 0.95

15 27 0.01 0.81 10.1 0.3 1 23 706 728 706 728 0.96

16 27 0.00093 0.072 13.4 0.5 3 23 736 755 735 755 0.98

17 27 8.4e-06 0.00065 19.8 0.1 1 23 761 783 761 783 0.97

18 27 0.00072 0.056 13.7 0.4 1 23 789 811 789 811 0.97

19 27 7.5e-06 0.00058 20.0 1.4 2 23 918 939 917 939 0.96

20 27 0.022 1.7 9.1 2.9 1 23 941 964 941 964 0.90

21 27 0.02 1.6 9.2 0.9 1 23 969 992 969 992 0.95

22 27 0.0042 0.32 11.3 0.3 1 23 998 1021 998 1021 0.94

23 27 0.0021 0.16 12.3 2.6 3 23 1029 1050 1027 1050 0.95

24 27 0.0007 0.054 13.8 2.7 1 23 1055 1077 1055 1077 0.97

25 27 2.5e-05 0.002 18.3 0.3 2 23 1084 1105 1083 1105 0.97

26 27 2e-05 0.0016 18.6 0.1 1 23 1111 1133 1111 1133 0.98

27 27 0.00097 0.075 13.3 1.5 1 23 1139 1161 1139 1161 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0012	0.091	13.1	0.3	2	23	205	227	204	227	0.91
2	27	0.49	38	4.8	0.3	1	23	239	262	239	262	0.95
3	27	0.055	4.2	7.8	3.5	1	23	275	298	275	298	0.93
4	27	6.1e-05	0.0047	17.1	5.9	1	23	304	326	304	327	0.95
5	27	0.014	1.1	9.7	0.3	3	23	334	355	332	355	0.94
6	27	0.00098	0.076	13.3	1.5	1	23	360	383	360	383	0.98
7	27	4.4e-07	3.4e-05	23.9	0.4	2	23	390	411	389	411	0.96
8	27	3.7e-06	0.00028	21.0	1.3	1	23	417	439	417	439	0.97
9	27	4.8e-05	0.0037	17.4	1.0	1	23	445	467	445	467	0.98
10	27	0.0041	0.32	11.4	3.4	2	23	569	590	568	590	0.97
11	27	5.7e-05	0.0044	17.2	1.9	1	23	592	615	592	615	0.96
12	27	0.0038	0.29	11.5	0.9	1	23	620	643	620	643	0.96
13	27	0.00043	0.033	14.5	2.2	1	23	649	672	649	672	0.95
14	27	0.0016	0.12	12.7	2.0	2	23	679	701	678	701	0.95
15	27	0.01	0.81	10.1	0.3	1	23	706	728	706	728	0.96
16	27	0.00093	0.072	13.4	0.5	3	23	736	755	735	755	0.98
17	27	8.4e-06	0.00065	19.8	0.1	1	23	761	783	761	783	0.97
18	27	0.00072	0.056	13.7	0.4	1	23	789	811	789	811	0.97
19	27	7.5e-06	0.00058	20.0	1.4	2	23	918	939	917	939	0.96
20	27	0.022	1.7	9.1	2.9	1	23	941	964	941	964	0.90
21	27	0.02	1.6	9.2	0.9	1	23	969	992	969	992	0.95
22	27	0.0042	0.32	11.3	0.3	1	23	998	1021	998	1021	0.94
23	27	0.0021	0.16	12.3	2.6	3	23	1029	1050	1027	1050	0.95
24	27	0.0007	0.054	13.8	2.7	1	23	1055	1077	1055	1077	0.97
25	27	2.5e-05	0.002	18.3	0.3	2	23	1084	1105	1083	1105	0.97
26	27	2e-05	0.0016	18.6	0.1	1	23	1111	1133	1111	1133	0.98
27	27	0.00097	0.075	13.3	1.5	1	23	1139	1161	1139	1161	0.98

Sequence Information

Coding Sequence: ATGAAAAAATGGCAGATCCTGGAGTTCGACGGGAAGCCGTACTACGCGTTTGTACCTGAAGACGACACGCCACTGCCTGACGAGTATATTCCCGAACAGATGGACGATACAGGACACGAGGATGAAAAGCAGGATCTCGTGAAAGTCGAATGTCTTTACAACGAAGATGAACTGCAATACGATTCGATGGATGAGAAATTGTACGCGGATGAAGATCTTTTAAACAGAAGCGCAGAGCAGAAGGAAGAAGAAGACGTGAAACCGATAATCCTAAACGGCACGATTGACGAAGAGAACGATAAAACGATTGGAGATATTTATCAGGTCAAAGTTCAGGGTAGTATGGTCACTATAGAGAAGCTGACATCCGATGACATTGAAGAGACGAAAGAAGTGGTGGGGTATCAAGAAATGCAACACGAGGTGCAAGAGGGGCATGAAGTGTATAACGATCAAGAGCAGTTGGAACAGATAGATCAAGTAGATCCGGATGATCAAGATCAGATAGAACAGGTGGAATACTTGGAGGAAGAGATCTTAGAGTCGCCGAATAATCGCGTGACAGCAACGAAGACGCGTAGGAAGATTTCCAGAAGTCCGGGCGGTGTACTGAAATGCAAAGTTTGCTCGGAGATGTTCAGCTCGGCCATTTCGTTCAGGAAGCACGTGGCATGGACGCACAAGAAGAAAGTGTGCATACAGGAAGATGGCGCGTACATCTGTGCGGTTTGCGATTACAGAACTCTTAAGAAGAGTCTTTTCGCGGCTCACTTGGAAAGGAAGCACGAAACTTGGTCCAGGAAACGACCCAATAACATGTTATTCCCTTGCGCTGCCTGTGGCTTCGTGTGTAGATCGAAGCACTCGTTACAGTCGCACTTTATTAGAAAGCACACCGATCGGTACGAGCATCAGTGCAAGTTTTGCCCGAAGAAGTTCAAGGTGAAAGGCGACCTGACCAACCACATACGGTTTCATCATAAAGAAAAACCGATTAACTGTCCCGTGTGCGGAAAACTGTGTCAGAATACTGGCTCTCTTTACGTACATCAGAAATGGGCACATTTCAAACCTAAGTACGAGTGTCATATATGCAAACGACGTATGGTCACGCAGGAAAATCTCGACCAACATCTACTAACGCAGCACGAGAAAAGGGAGAAGATAGTATGCGCTGAATGCGGGAAAACGTTCACTAAAAAAGATTCATTTAAAAGGCACATGGCGGTACACACAGGAAGCAAGCCACATTCCTGTCTGATCTGCAACAAACCATTCGCCAGGAGGTCTCAGCTGCGTCAACATTTGCTCATCCACACTGGAAAGAGACCTTTCGTCTGTGACATTTGCGGGAAAGCGTTCACGCAGAAGCCTGGTCTGATCTGTCATAGGAAAACTCATCCTGGACCTCATCCTCCTTTGCCTGTGATGCCAATCGCCGATATCGTGAAAGAGTTTACCGAAGGTTACGTACAGGAGATAAACGCGCGTGAAAACGAAGAGAGGATCGAGGAGGAAGCAGTCTTGGATCCTCTGAGCGAAGAATTCAAGACCGACGCACACTCTCACTTGCCGCTAGAGCTGCCCGAGGTATACGAGAATTGGATCGACAAAGAAAACTTGGAGATCGTGTCCGCTAGCCAAGAGGAAACTGCTCGAAACAAAGCCGACGAACGATCGAAAAAGAAAACCTTAACTCGTCTAGAATGCGACCACTGTCGGCGAAAGTTCTTGAAGAAGAGCAACTTGGCGGAGCATTTGAAGAAACACAGACACAAGTGTTCAGACTGTCCGAAGACTTTCAGACTTCGTCGATACCTAGCTTCTCACATCGAGAAGATCCATCGACGTCAAGTGTACGATTGCAGTGTTTGCGAATACAAAAGCAATAACAAGGGAACACTGAAGAATCACTACATTCGTCTGCACACGACTAACTACAATTTCGCTTGCGACACTTGTGGCAAACAATTCAAGATAAAGAAGGCATTGAACCATCACGTGAAACAGAATCATAGCGACGCGCCACCGATTGTGTGCGACGTTTGCGGCCACTTCAGCAAGAATCTTCATGCTCTCAAGGCTCATATGAAGTACAGGCACTATAAGCCTGAGTTTATCTGCAGAATCTGCAGAAGAGGGATGACCACTCAAGAGAATTTGGAGCAACACTTAACCTGGCACGAGACCAGAGAGAAGGTGCTGTGCCCCACGTGTGGAAAGAGATTCCGAGGTCGGGATTTGGACTCTCATATGCGAGTGCACACAGGAGTTAAGCCTTTTCCTTGTCCTGTTTGTGGAAAGACATTCAGAAGACAGACTGCCCAAGAGCAGCATGTTCTCATTCACACGGGAAAGAGACCGTATGTTTGCGATATCTGTGGGCAAGCGTTTGCTCAGAAACCTGGGCTGATCTGCCATAGGAAGCGTCATCCTGGACCTCTGCCTCCATTGCCTGTCGTATCCATCAAGAATATCGTCACGGAGTTCACTAAGGATTCTCCTGCACTGGACCCGCTAAACGGTAGCGACACGAATCCTCTGGAAGAACCTTGTTTCATCAAAATAGAAAACTCGTACTCTTTGGCAAAAACCCAACGAAGGCGACAAAGGGAAAGAATCAGAAGAATGAACCTAAAAATTCGCACTGTAGCGTCCCTAAGTTGCGCAACGAGAAAGTTGAAGATCGAACCAAGTCGAACCAACAAAGTTGAACCAAGAATCTCGAAAAAGCAAACTGAACCTCTACTGGAGTGTGACTTCTGTGGCAAGCAGTTCAACCGGAAGTCGTTTCTAGCGTCGCACATGAAGCAGCACAGACATCGCTGTAAAACTTGCAACCAAACGTTCGGGCTAAGAAAAGACTTGAAACAGCATTCGGAGCAAGTTCATGGTCCTGTGCTGTATCCGTGCAGTATCTGTGAGTATAAAAGCAACAACAGGTGGACGCTGAAGGATCATTTCATTCGAAAGCACACCAGCAGGTTCGATTATTCGTGTGCAGTCTGCGGCAAACAGTTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAAATGCACAGCAACGCATCTCCAATTATTTGCACAGTTTGCGGTCACGCTTGCAAAAGCCTGCCTTCCTTGAAGTCTCACATGAAATACAAGCACTACAAGACTGCGTACCAGTGTAATTTGTGCAAACGTTGCATGACGACGCAGAACAACCTGGAGCAACATCTGTTGTGGCACAAGAGGAAGGAGAAAGTGGTTTGCCAGACTTGTGGCAAGACTTTCGGTCAAAAGAGGGATTTGGATCTTCATTTGAGGATCCACGAAGGTATCAGGCCGTTCTCTTGTCCGGTTTGTGGCAAGAAATTCCCGAGAAGAACTGCTCAGGAGCAACATATTCTCATACACACGGGCCAAAGACCGTATACTTGTGATATTTGTGGGCAGAAGTTTGCGCAGAAACCGGGACTGATCTGTCACAGGAAACGACATCCTGGACCTCTGCCACAGCTCCCTGTGATCTCCGTTAGAAAGATCATCGCGGATTTCACTCAGGGACTGAACGATGCCGCGATGGAGAAGAAGGAGAATTAG
Protein Sequence: MKKWQILEFDGKPYYAFVPEDDTPLPDEYIPEQMDDTGHEDEKQDLVKVECLYNEDELQYDSMDEKLYADEDLLNRSAEQKEEEDVKPIILNGTIDEENDKTIGDIYQVKVQGSMVTIEKLTSDDIEETKEVVGYQEMQHEVQEGHEVYNDQEQLEQIDQVDPDDQDQIEQVEYLEEEILESPNNRVTATKTRRKISRSPGGVLKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHIRFHHKEKPINCPVCGKLCQNTGSLYVHQKWAHFKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGSKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARENEERIEEEAVLDPLSEEFKTDAHSHLPLELPEVYENWIDKENLEIVSASQEETARNKADERSKKKTLTRLECDHCRRKFLKKSNLAEHLKKHRHKCSDCPKTFRLRRYLASHIEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTNYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDSPALDPLNGSDTNPLEEPCFIKIENSYSLAKTQRRRQRERIRRMNLKIRTVASLSCATRKLKIEPSRTNKVEPRISKKQTEPLLECDFCGKQFNRKSFLASHMKQHRHRCKTCNQTFGLRKDLKQHSEQVHGPVLYPCSICEYKSNNRWTLKDHFIRKHTSRFDYSCAVCGKQFKIKNDMVQHAKQMHSNASPIICTVCGHACKSLPSLKSHMKYKHYKTAYQCNLCKRCMTTQNNLEQHLLWHKRKEKVVCQTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPQLPVISVRKIIADFTQGLNDAAMEKKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00220718;
90% Identity: iTF_00220718; iTF_00218561;
80% Identity: -